Wall clock time and date at job start Tue Mar 31 2020 23:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47242 * 239.99760 * 2 1 3 5 5 H 1.07993 * 119.99854 * 239.99954 * 4 2 1 6 6 C 1.37876 * 119.99900 * 59.99977 * 4 2 1 7 7 N 1.31517 * 120.00097 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47027 * 60.00223 * 8 6 4 10 10 H 1.48504 * 109.47211 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47058 * 299.99961 * 8 6 4 12 12 N 1.46903 * 109.46999 * 119.99720 * 2 1 3 13 13 C 1.46903 * 110.99905 * 275.00243 * 12 2 1 14 14 H 1.09003 * 109.47165 * 35.00105 * 13 12 2 15 15 C 1.52995 * 109.46928 * 275.00168 * 13 12 2 16 16 C 1.50703 * 109.46935 * 155.00101 * 13 12 2 17 17 O 1.21283 * 119.99864 * 359.97438 * 16 13 12 18 18 N 1.34779 * 119.99938 * 179.97438 * 16 13 12 19 19 C 1.39976 * 120.00004 * 185.52959 * 18 16 13 20 20 C 1.38850 * 120.07476 * 24.82850 * 19 18 16 21 21 C 1.38107 * 119.94297 * 179.72322 * 20 19 18 22 22 C 1.38295 * 120.09493 * 0.25145 * 21 20 19 23 23 N 1.48023 * 119.93094 * 180.02562 * 22 21 20 24 24 O 1.21802 * 119.99807 * 0.02562 * 23 22 21 25 25 O 1.21800 * 120.00315 * 180.02562 * 23 22 21 26 26 C 1.38262 * 120.14923 * 0.02684 * 22 21 20 27 27 C 1.38236 * 120.05545 * 0.02562 * 26 22 21 28 28 Cl 1.73600 * 120.04800 * 179.97438 * 27 26 22 29 29 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47672 * 300.00246 * 1 2 3 31 31 H 1.08998 * 109.47121 * 60.00247 * 1 2 3 32 32 H 0.96998 * 120.00588 * 180.02562 * 7 6 4 33 33 H 1.00896 * 110.99453 * 151.05019 * 12 2 1 34 34 H 1.08997 * 109.47679 * 59.99838 * 15 13 12 35 35 H 1.09002 * 109.47219 * 180.02562 * 15 13 12 36 36 H 1.09003 * 109.47147 * 299.99949 * 15 13 12 37 37 H 0.96998 * 119.99521 * 5.53965 * 18 16 13 38 38 H 1.08000 * 120.02820 * 359.97438 * 20 19 18 39 39 H 1.08004 * 119.95709 * 180.28113 * 21 20 19 40 40 H 1.07998 * 119.97532 * 179.97438 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5199 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2575 0.9330 2.2907 15 6 3.4109 0.9810 2.3224 16 6 1.9785 -0.5675 3.6259 17 8 1.8631 -1.7742 3.5856 18 7 2.0139 0.0667 4.8147 19 6 2.0342 -0.6735 6.0025 20 6 2.5247 -1.9725 6.0046 21 6 2.5488 -2.6983 7.1793 22 6 2.0802 -2.1351 8.3522 23 7 2.1083 -2.9162 9.6093 24 8 2.5441 -4.0535 9.6100 25 8 1.6955 -2.4216 10.6430 26 6 1.5856 -0.8440 8.3534 27 6 1.5576 -0.1122 7.1810 28 17 0.9359 1.5086 7.1825 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7081 1.1607 -3.4844 33 1 2.9173 -1.1204 1.0288 34 1 3.4862 1.5525 1.3973 35 1 3.4577 1.6598 3.1740 36 1 4.2358 0.2707 2.3786 37 1 2.0251 1.0361 4.8470 38 1 2.8909 -2.4134 5.0893 39 1 2.9345 -3.7072 7.1821 40 1 1.2200 -0.4071 9.2709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460314782.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:32 Heat of formation + Delta-G solvation = -10.948990 kcal Electronic energy + Delta-G solvation = -26614.974499 eV Core-core repulsion = 22459.321427 eV Total energy + Delta-G solvation = -4155.653072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.42969 -41.13042 -39.19679 -37.18966 -36.78466 -36.43141 -35.31757 -33.29519 -31.69684 -31.35675 -30.25362 -27.26617 -26.66500 -25.37486 -24.28984 -23.91643 -22.52616 -20.66328 -19.85846 -19.75513 -18.93835 -18.42798 -17.76552 -17.50072 -16.48611 -16.01041 -15.90174 -15.31378 -15.00519 -14.84624 -14.40729 -14.28428 -13.94049 -13.76373 -13.66877 -12.73262 -12.55820 -12.46761 -12.30967 -12.25760 -11.85676 -11.76920 -11.70290 -11.42746 -11.36632 -11.33621 -11.13556 -10.97721 -10.86445 -10.59241 -10.27558 -10.18449 -9.86452 -9.62586 -9.02062 -8.92641 -8.60238 -7.54077 -6.15618 -4.22392 -0.52241 0.32411 0.94813 0.98536 1.46176 2.30985 2.43181 2.85575 3.23802 3.28881 3.31920 3.87936 4.11489 4.18798 4.26733 4.31102 4.59314 4.85523 4.89554 5.05873 5.11629 5.18435 5.23125 5.26594 5.31595 5.61481 5.67331 5.83384 5.97356 6.13929 6.15910 6.65253 6.82618 6.95101 7.03819 7.28340 7.39814 7.63518 7.69794 7.84364 8.09321 8.15397 8.43319 8.85633 9.44162 10.90713 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.002324 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.156312 B =12047.288527 C =12945.294054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.665 5.665 13 C 0.072 3.928 14 H 0.106 0.894 15 C -0.178 4.178 16 C 0.520 3.480 17 O -0.480 6.480 18 N -0.673 5.673 19 C 0.233 3.767 20 C -0.127 4.127 21 C -0.022 4.022 22 C -0.068 4.068 23 N 0.036 4.964 24 O -0.160 6.160 25 O -0.165 6.165 26 C -0.020 4.020 27 C -0.086 4.086 28 Cl -0.035 7.035 29 H 0.034 0.966 30 H 0.002 0.998 31 H 0.083 0.917 32 H 0.263 0.737 33 H 0.341 0.659 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.180 0.820 39 H 0.163 0.837 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.549 2.418 19.784 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.109 3.891 3 H 0.024 0.976 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.296 5.296 13 C -0.043 4.043 14 H 0.124 0.876 15 C -0.237 4.237 16 C 0.308 3.692 17 O -0.350 6.350 18 N -0.318 5.318 19 C 0.132 3.868 20 C -0.148 4.148 21 C -0.042 4.042 22 C -0.153 4.153 23 N 0.554 4.446 24 O -0.375 6.375 25 O -0.380 6.380 26 C -0.040 4.040 27 C -0.117 4.117 28 Cl -0.006 7.006 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.256 0.744 38 H 0.197 0.803 39 H 0.180 0.820 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.687 1.960 18.983 19.273 hybrid contribution 0.860 0.651 -0.641 1.255 sum 3.547 2.611 18.342 18.864 Atomic orbital electron populations 1.21775 0.97753 0.99722 0.99348 1.19167 0.92612 0.92433 0.84923 0.97618 1.21154 1.31874 1.12728 0.90196 0.92089 1.24898 0.94910 0.94950 0.99090 1.69867 1.36318 1.22800 1.23807 0.86549 0.79075 0.79859 0.81876 1.20106 1.21264 1.20270 1.60456 1.33120 1.31267 1.04793 1.21445 0.99052 0.93979 0.89792 0.87637 1.22497 0.97037 1.00815 1.03358 1.21731 0.74069 0.89115 0.84249 1.90654 1.43640 1.14367 1.86315 1.44210 1.72469 1.11249 1.03881 1.17985 0.91185 0.92248 0.85335 1.21540 1.00861 0.92658 0.99753 1.21090 0.92819 1.01307 0.88981 1.20834 1.15038 0.93988 0.85431 1.43448 0.97880 1.00895 1.02341 1.94554 1.47564 1.02843 1.92569 1.94541 1.49045 1.73365 1.21014 1.20563 0.94021 0.90808 0.98625 1.20318 1.07449 0.90251 0.93684 1.98412 1.85510 1.18122 1.98545 0.94676 0.97926 0.89798 0.92724 0.84010 0.90117 0.92670 0.91966 0.74381 0.80339 0.81982 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 9.17 37.16 0.34 -2.63 16 2 C 0.22 4.94 2.41 -68.86 -0.17 4.77 16 3 H 0.01 0.15 7.11 -51.93 -0.37 -0.22 16 4 C -0.52 -13.39 8.59 -34.44 -0.30 -13.69 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.02 11.32 55.43 0.63 -23.39 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.66 -12.78 5.54 -102.17 -0.57 -13.34 16 13 C 0.07 1.05 2.81 -68.86 -0.19 0.85 16 14 H 0.11 1.53 7.11 -51.93 -0.37 1.16 16 15 C -0.18 -2.11 9.05 37.15 0.34 -1.77 16 16 C 0.52 6.99 7.03 -10.98 -0.08 6.91 16 17 O -0.48 -7.90 13.60 5.56 0.08 -7.83 16 18 N -0.67 -6.71 5.04 -9.83 -0.05 -6.76 16 19 C 0.23 2.32 6.43 -83.65 -0.54 1.78 16 20 C -0.13 -1.29 8.72 -39.40 -0.34 -1.63 16 21 C -0.02 -0.21 9.55 -39.61 -0.38 -0.58 16 22 C -0.07 -0.68 6.85 -79.91 -0.55 -1.23 16 23 N 0.04 0.43 4.45 33.98 0.15 0.58 16 24 O -0.16 -2.01 18.44 -29.46 -0.54 -2.56 16 25 O -0.17 -2.05 18.44 -29.46 -0.54 -2.59 16 26 C -0.02 -0.17 9.33 -39.57 -0.37 -0.54 16 27 C -0.09 -0.76 6.34 -39.32 -0.25 -1.01 16 28 Cl -0.03 -0.27 27.79 -51.86 -1.44 -1.71 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.00 0.04 7.43 -51.93 -0.39 -0.35 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 33 H 0.34 6.50 7.96 -39.29 -0.31 6.19 16 34 H 0.08 1.10 7.43 -51.93 -0.39 0.71 16 35 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 36 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.42 3.23 7.37 -40.82 -0.30 2.93 16 38 H 0.18 2.01 5.79 -52.49 -0.30 1.70 16 39 H 0.16 1.27 7.60 -52.48 -0.40 0.87 16 40 H 0.16 1.21 7.60 -52.49 -0.40 0.81 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -28.94 358.43 -8.80 -37.74 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.32 Total: 6.29 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.58 Total: -7.20 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.16 Total: -42.92 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -1.01 Total: -12.98 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.44 Total: -1.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.94 -8.80 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460314782.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.791 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds