Wall clock time and date at job start Wed Apr 1 2020 00:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00205 * 2 1 4 4 O 1.20828 * 119.99792 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00061 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.47825 * 300.00500 * 5 3 2 7 7 C 1.52998 * 109.46868 * 60.00549 * 5 3 2 8 8 C 1.53002 * 109.47097 * 185.83877 * 7 5 3 9 9 F 1.39897 * 109.47151 * 53.87798 * 8 7 5 10 10 F 1.39901 * 109.47451 * 173.87739 * 8 7 5 11 11 N 1.46505 * 109.47225 * 180.02562 * 5 3 2 12 12 S 1.65597 * 120.00027 * 94.02383 * 11 5 3 13 13 O 1.42096 * 104.27818 * 182.04124 * 12 11 5 14 14 O 1.42097 * 104.28129 * 309.90182 * 12 11 5 15 15 C 1.81407 * 104.44667 * 65.97294 * 12 11 5 16 16 C 1.53002 * 109.47042 * 176.02082 * 15 12 11 17 17 C 1.50698 * 115.55112 * 54.02059 * 16 15 12 18 18 H 1.08001 * 120.00222 * 264.57825 * 17 16 15 19 19 C 1.37880 * 119.99781 * 84.57795 * 17 16 15 20 20 N 1.31518 * 119.99970 * 2.00787 * 19 17 16 21 21 Si 1.86800 * 120.00123 * 182.01366 * 19 17 16 22 22 H 1.48508 * 109.47367 * 89.99733 * 21 19 17 23 23 H 1.48496 * 109.47501 * 209.99836 * 21 19 17 24 24 H 1.48503 * 109.47118 * 330.00108 * 21 19 17 25 25 C 1.53002 * 117.49565 * 268.35785 * 16 15 12 26 26 C 1.52991 * 117.49866 * 199.69371 * 16 15 12 27 27 H 1.09001 * 109.46999 * 59.99584 * 1 2 3 28 28 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47020 * 299.99792 * 1 2 3 30 30 H 1.09003 * 109.47305 * 305.83637 * 7 5 3 31 31 H 1.08997 * 109.47407 * 65.84269 * 7 5 3 32 32 H 1.09006 * 109.47411 * 293.87932 * 8 7 5 33 33 H 0.97002 * 119.99910 * 274.03186 * 11 5 3 34 34 H 1.08992 * 109.47066 * 296.02108 * 15 12 11 35 35 H 1.08994 * 109.47065 * 56.02248 * 15 12 11 36 36 H 0.96994 * 119.99888 * 185.02359 * 20 19 17 37 37 H 1.08989 * 117.50263 * 359.97438 * 25 16 15 38 38 H 1.09004 * 117.50008 * 145.02471 * 25 16 15 39 39 H 1.09001 * 117.50270 * 214.97782 * 26 16 15 40 40 H 1.08996 * 117.50099 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9558 0.7808 0.8907 7 6 4.1138 0.5811 -1.2484 8 6 5.6413 0.5326 -1.1766 9 9 6.0330 -0.0569 0.0301 10 9 6.1348 -0.2223 -2.2461 11 7 3.9818 2.6797 0.0011 12 16 4.3125 3.4448 1.4320 13 8 4.6275 4.7774 1.0522 14 8 3.1846 3.1631 2.2490 15 6 5.7861 2.5989 2.0675 16 6 6.2544 3.2859 3.3519 17 6 5.2112 3.4290 4.4300 18 1 4.6474 4.3459 4.5175 19 6 4.9766 2.3892 5.3046 20 7 5.6904 1.2876 5.2230 21 14 3.6449 2.5451 6.6052 22 1 2.3575 2.0469 6.0577 23 1 4.0200 1.7420 7.7966 24 1 3.4984 3.9705 6.9952 25 6 7.2896 4.4045 3.2175 26 6 7.6994 3.0470 3.7942 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.7202 -0.4340 -1.3022 31 1 3.8093 1.1364 -2.1354 32 1 6.0401 1.5456 -1.2324 33 1 4.0630 3.1618 -0.8368 34 1 5.5440 1.5576 2.2799 35 1 6.5799 2.6425 1.3219 36 1 5.4779 0.5290 5.7889 37 1 7.6372 4.6508 2.2144 38 1 7.2164 5.2437 3.9093 39 1 7.8956 2.9937 4.8651 40 1 8.3163 2.4001 3.1706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475110363.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:05 Heat of formation + Delta-G solvation = -259.811832 kcal Electronic energy + Delta-G solvation = -29902.064955 eV Core-core repulsion = 25286.974900 eV Total energy + Delta-G solvation = -4615.090055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.86981 -47.88490 -41.67776 -38.53597 -38.19839 -37.85858 -37.02073 -36.78573 -34.07043 -32.28052 -29.92024 -29.36464 -27.49983 -27.12996 -23.59924 -22.92230 -22.15993 -21.62222 -20.50204 -19.17250 -18.83339 -18.55796 -18.26593 -18.14770 -17.90273 -17.47464 -16.86459 -16.77702 -16.74135 -16.56421 -15.94346 -15.47839 -14.89939 -14.81853 -14.69706 -14.52733 -14.22172 -14.16211 -13.83654 -13.73266 -13.50652 -13.11792 -13.10248 -12.94561 -12.93480 -12.86599 -12.79238 -12.70050 -12.43582 -12.18720 -12.11333 -11.93848 -11.83750 -11.79910 -11.48894 -10.99303 -10.84023 -10.47171 -9.89293 -8.20178 -6.35308 -0.65485 1.01068 1.35011 1.40129 1.46216 1.49321 1.89735 2.39352 2.81207 2.88788 3.08100 3.16210 3.33569 3.36685 3.45961 3.60132 3.75422 3.76701 3.93425 4.13176 4.21421 4.29368 4.31668 4.34719 4.57457 4.62320 4.67635 4.70324 4.74215 4.86962 5.02604 5.25204 5.25542 5.45029 5.66922 5.71042 5.92856 6.22027 6.60563 6.71371 7.39003 8.86363 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.005517 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.874502 B = 5073.779747 C = 6112.778083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.446 3.554 4 O -0.515 6.515 5 C 0.164 3.836 6 H 0.131 0.869 7 C -0.162 4.162 8 C 0.256 3.744 9 F -0.214 7.214 10 F -0.207 7.207 11 N -1.098 6.098 12 S 2.614 3.386 13 O -0.988 6.988 14 O -0.983 6.983 15 C -0.548 4.548 16 C 0.006 3.994 17 C -0.537 4.537 18 H 0.044 0.956 19 C 0.052 3.948 20 N -0.884 5.884 21 Si 0.923 3.077 22 H -0.281 1.281 23 H -0.271 1.271 24 H -0.272 1.272 25 C -0.195 4.195 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.138 0.862 29 H 0.048 0.952 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.433 0.567 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.266 0.734 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 -6.505 -16.966 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.272 6.272 3 C 0.286 3.714 4 O -0.402 6.402 5 C 0.053 3.947 6 H 0.149 0.851 7 C -0.201 4.201 8 C 0.202 3.798 9 F -0.195 7.195 10 F -0.188 7.188 11 N -0.858 5.858 12 S 2.712 3.288 13 O -0.979 6.979 14 O -0.972 6.972 15 C -0.681 4.681 16 C 0.004 3.996 17 C -0.574 4.574 18 H 0.062 0.938 19 C -0.151 4.151 20 N -0.520 5.520 21 Si 0.748 3.252 22 H -0.207 1.207 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.232 4.232 26 C -0.168 4.168 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.271 0.729 34 H 0.146 0.854 35 H 0.163 0.837 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.643 -5.769 -16.323 17.513 hybrid contribution -0.658 -0.201 0.848 1.091 sum -3.301 -5.970 -15.475 16.912 Atomic orbital electron populations 1.23598 0.74714 1.05970 1.02419 1.86471 1.25052 1.32026 1.83699 1.24388 0.92802 0.81865 0.72309 1.90684 1.67204 1.37464 1.44866 1.20290 0.87031 0.83201 1.04129 0.85131 1.22952 0.93580 1.05878 0.97732 1.22166 0.93506 0.93452 0.70672 1.93029 1.92464 1.86951 1.47072 1.92992 1.89294 1.79757 1.56766 1.55646 1.83219 1.20203 1.26723 1.04797 0.77132 0.74250 0.72594 1.93475 1.86662 1.35508 1.82219 1.93518 1.49862 1.85188 1.68659 1.29851 1.18184 1.12834 1.07260 1.18372 0.90560 0.98727 0.91956 1.20691 1.20724 1.01090 1.14906 0.93760 1.25364 0.96473 0.95415 0.97886 1.70017 1.37874 1.03801 1.40337 0.86097 0.80663 0.78574 0.79823 1.20719 1.19554 1.19677 1.23254 1.05491 0.92538 1.01905 1.22443 0.97711 0.97297 0.99384 0.91008 0.84405 0.93291 0.85100 0.84176 0.84054 0.72908 0.85366 0.83673 0.92512 0.87796 0.90373 0.91733 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -8.58 10.36 -51.43 -0.53 -9.12 16 3 C 0.45 12.79 7.21 71.24 0.51 13.31 16 4 O -0.51 -18.50 16.10 21.96 0.35 -18.15 16 5 C 0.16 3.88 2.48 44.24 0.11 3.99 16 6 H 0.13 3.31 6.64 -2.39 -0.02 3.29 16 7 C -0.16 -2.23 5.06 30.59 0.15 -2.08 16 8 C 0.26 3.94 5.24 71.98 0.38 4.31 16 9 F -0.21 -4.81 16.47 44.97 0.74 -4.07 16 10 F -0.21 -3.57 17.34 44.97 0.78 -2.79 16 11 N -1.10 -28.64 4.46 -172.52 -0.77 -29.41 16 12 S 2.61 102.21 4.94 -56.49 -0.28 101.94 16 13 O -0.99 -42.13 18.08 -127.65 -2.31 -44.43 16 14 O -0.98 -48.48 16.79 -127.65 -2.14 -50.63 16 15 C -0.55 -20.68 5.90 71.98 0.42 -20.26 16 16 C 0.01 0.28 1.53 -52.93 -0.08 0.20 16 17 C -0.54 -29.43 7.44 25.60 0.19 -29.24 16 18 H 0.04 2.56 7.81 -2.91 -0.02 2.54 16 19 C 0.05 2.87 5.43 84.65 0.46 3.33 16 20 N -0.88 -47.97 12.73 21.45 0.27 -47.70 16 21 Si 0.92 44.89 29.54 68.60 2.03 46.91 16 22 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 25 C -0.19 -7.96 9.92 30.62 0.30 -7.65 16 26 C -0.13 -5.57 9.27 30.62 0.28 -5.29 16 27 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 28 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.13 1.52 7.97 -2.39 -0.02 1.50 16 31 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.14 1.43 7.95 -2.38 -0.02 1.41 16 33 H 0.43 8.14 8.79 -96.74 -0.85 7.29 16 34 H 0.13 4.97 7.61 -2.39 -0.02 4.96 16 35 H 0.15 4.06 8.09 -2.39 -0.02 4.04 16 36 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 37 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.09 3.41 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -78.72 366.44 2.30 -76.41 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.23 Total: 18.71 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.93 Total: -37.68 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -0.50 Total: -77.11 kcal Atomic # 8 Polarization: -117.69 SS G_CDS: -4.63 Total: -122.32 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.52 Total: -6.86 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 102.21 SS G_CDS: -0.28 Total: 101.94 kcal Total: -78.72 2.30 -76.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475110363.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.399 kcal (2) G-P(sol) polarization free energy of solvation -78.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds