Wall clock time and date at job start Tue Mar 31 2020 23:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46690 * 2 1 4 4 C 1.34777 * 120.00151 * 100.63929 * 3 2 1 5 5 O 1.21568 * 120.00484 * 188.01628 * 4 3 2 6 6 C 1.47700 * 119.99624 * 8.02006 * 4 3 2 7 7 C 1.39660 * 120.16235 * 327.91917 * 6 4 3 8 8 C 1.37859 * 119.87561 * 179.97438 * 7 6 4 9 9 S 1.76197 * 119.89221 * 180.02562 * 8 7 6 10 10 O 1.42100 * 106.40273 * 208.50567 * 9 8 7 11 11 O 1.42100 * 106.40212 * 341.42961 * 9 8 7 12 12 C 1.76205 * 107.21914 * 94.96748 * 9 8 7 13 13 H 1.08001 * 119.99495 * 359.97438 * 12 9 8 14 14 C 1.37870 * 120.00220 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99826 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00070 * 180.02562 * 14 12 9 17 17 H 1.48505 * 109.47275 * 89.99937 * 16 14 12 18 18 H 1.48502 * 109.47154 * 209.99523 * 16 14 12 19 19 H 1.48495 * 109.47251 * 329.99788 * 16 14 12 20 20 C 1.38466 * 120.21711 * 359.97438 * 8 7 6 21 21 C 1.38200 * 120.34060 * 0.02562 * 20 8 7 22 22 C 1.38324 * 120.11685 * 359.78103 * 21 20 8 23 23 F 1.35097 * 120.11509 * 180.25732 * 22 21 20 24 24 C 1.46506 * 120.00284 * 280.63523 * 3 2 1 25 25 C 1.52995 * 117.49913 * 196.25256 * 24 3 2 26 26 C 1.52996 * 117.49564 * 127.59168 * 24 3 2 27 27 H 1.08997 * 109.47007 * 299.99550 * 1 2 3 28 28 H 1.08998 * 109.47148 * 60.00017 * 1 2 3 29 29 H 1.09001 * 109.46715 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47148 * 119.99983 * 2 1 3 31 31 H 1.08997 * 109.47007 * 240.00450 * 2 1 3 32 32 H 1.07993 * 120.06496 * 359.96154 * 7 6 4 33 33 H 0.97003 * 120.00196 * 179.97438 * 15 14 12 34 34 H 1.07997 * 119.82630 * 180.02562 * 20 8 7 35 35 H 1.07997 * 119.94515 * 180.02562 * 21 20 8 36 36 H 1.08998 * 115.54470 * 341.92949 * 24 3 2 37 37 H 1.08996 * 117.49917 * 0.02562 * 25 24 3 38 38 H 1.09000 * 117.49443 * 145.02177 * 25 24 3 39 39 H 1.09004 * 117.49767 * 214.97758 * 26 24 3 40 40 H 1.09001 * 117.50506 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4460 1.9448 1.1471 5 8 2.7131 3.1304 1.1794 6 6 2.5904 1.1219 2.3651 7 6 1.7354 0.0401 2.5866 8 6 1.8758 -0.7243 3.7252 9 16 0.7977 -2.0896 4.0047 10 8 0.7000 -2.2418 5.4142 11 8 -0.3306 -1.8885 3.1646 12 6 1.6146 -3.5307 3.4042 13 1 2.5983 -3.4506 2.9656 14 6 0.9976 -4.7605 3.4931 15 7 -0.2005 -4.8579 4.0267 16 14 1.8639 -6.2883 2.8571 17 1 2.6698 -6.8912 3.9491 18 1 0.8541 -7.2705 2.3871 19 1 2.7565 -5.9181 1.7296 20 6 2.8620 -0.4233 4.6494 21 6 3.7130 0.6451 4.4393 22 6 3.5871 1.4190 3.2997 23 9 4.4224 2.4603 3.0918 24 6 2.0416 2.1500 -1.2469 25 6 2.8942 3.4200 -1.2780 26 6 1.3674 3.5234 -1.2428 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 0.9655 -0.1970 1.8674 33 1 -0.6348 -5.7231 4.0890 34 1 2.9666 -1.0266 5.5390 35 1 4.4802 0.8739 5.1641 36 1 1.9806 1.5621 -2.1628 37 1 3.4381 3.6833 -0.3709 38 1 3.3939 3.6678 -2.2145 39 1 0.8633 3.8393 -2.1562 40 1 0.9060 3.8549 -0.3125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548622270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:16 Heat of formation + Delta-G solvation = -73.055526 kcal Electronic energy + Delta-G solvation = -28415.456757 eV Core-core repulsion = 24239.234288 eV Total energy + Delta-G solvation = -4176.222469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -48.96944 -40.82333 -38.58403 -36.55144 -35.57684 -35.17770 -34.16296 -33.25260 -31.14956 -30.87556 -29.97950 -26.30758 -24.67674 -23.59808 -22.96932 -22.39922 -22.26387 -19.93424 -18.77573 -17.70732 -17.58423 -16.89274 -16.69221 -16.25654 -16.02876 -15.66995 -15.17781 -15.12426 -14.89238 -14.54036 -14.10823 -13.97411 -13.76245 -13.33539 -13.21723 -13.03441 -12.77528 -12.60523 -12.45133 -12.09845 -11.79823 -11.48767 -11.38007 -11.32999 -11.30110 -11.08243 -10.92041 -10.70493 -10.47411 -10.41749 -10.34350 -10.02087 -9.59447 -9.39099 -9.09787 -9.00959 -8.84668 -8.48330 -6.86653 -5.51691 0.66121 0.96335 1.88897 2.58343 2.73499 2.98026 3.05868 3.11047 3.43215 3.85281 3.94745 4.07859 4.23291 4.48762 4.61687 4.79171 4.83012 4.97841 4.99308 5.05288 5.16291 5.22720 5.25780 5.39578 5.46861 5.50339 5.64869 5.68259 5.70949 5.82919 5.84351 5.94586 6.01319 6.06771 6.10418 6.28716 6.34471 6.62783 6.69819 6.73014 7.15081 7.22087 7.77137 8.05465 8.70978 10.08069 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.004246 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.335786 B = 6592.508956 C = 7551.620954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 N -0.577 5.577 4 C 0.567 3.433 5 O -0.522 6.522 6 C -0.201 4.201 7 C 0.002 3.998 8 C -0.665 4.665 9 S 2.601 3.399 10 O -0.978 6.978 11 O -0.978 6.978 12 C -1.002 5.002 13 H 0.106 0.894 14 C 0.134 3.866 15 N -0.839 5.839 16 Si 0.923 3.077 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.261 1.261 20 C 0.028 3.972 21 C -0.186 4.186 22 C 0.187 3.813 23 F -0.120 7.120 24 C 0.072 3.928 25 C -0.192 4.192 26 C -0.185 4.185 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.294 0.706 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 7.850 -8.071 12.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.054 4.054 3 N -0.308 5.308 4 C 0.357 3.643 5 O -0.401 6.401 6 C -0.205 4.205 7 C -0.017 4.017 8 C -0.744 4.744 9 S 2.781 3.219 10 O -0.975 6.975 11 O -0.975 6.975 12 C -1.136 5.136 13 H 0.125 0.875 14 C -0.085 4.085 15 N -0.468 5.468 16 Si 0.746 3.254 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.185 1.185 20 C 0.009 3.991 21 C -0.205 4.205 22 C 0.167 3.833 23 F -0.098 7.098 24 C -0.032 4.032 25 C -0.230 4.230 26 C -0.223 4.223 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.102 0.898 32 H 0.197 0.803 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.787 8.566 -7.642 12.438 hybrid contribution 1.308 -0.565 -0.686 1.581 sum 6.095 8.001 -8.328 13.059 Atomic orbital electron populations 1.22291 0.94347 1.04415 1.02763 1.22613 0.95798 0.81495 1.05493 1.47235 1.62740 1.14193 1.06612 1.18047 0.76913 0.86773 0.82605 1.90654 1.50508 1.14735 1.84155 1.19998 1.01545 1.01264 0.97735 1.22017 0.95864 0.89048 0.94722 1.31895 1.17527 1.23031 1.01971 1.01323 0.73202 0.73262 0.74124 1.93361 1.86044 1.86059 1.32045 1.93343 1.48512 1.86647 1.68984 1.30068 1.16590 1.09720 1.57203 0.87535 1.24752 0.93558 1.00011 0.90179 1.69886 1.12508 1.28757 1.35621 0.86112 0.79723 0.79630 0.79899 1.19008 1.19800 1.18482 1.21103 0.88604 0.92706 0.96692 1.21238 1.03666 0.97961 0.97638 1.17767 0.87597 0.84400 0.93560 1.91560 1.68796 1.54749 1.94674 1.21663 1.06904 0.87383 0.87205 1.23776 0.94694 0.99590 1.04892 1.23254 0.95913 0.99867 1.03302 0.91546 0.91793 0.89364 0.87080 0.89771 0.80349 0.89581 0.82618 0.83426 0.85153 0.84901 0.89219 0.88692 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.19 37.16 0.34 -1.97 16 2 C 0.07 0.87 5.64 -4.04 -0.02 0.85 16 3 N -0.58 -8.03 2.85 -167.27 -0.48 -8.51 16 4 C 0.57 9.39 7.15 -12.39 -0.09 9.30 16 5 O -0.52 -9.45 11.72 5.31 0.06 -9.39 16 6 C -0.20 -3.41 5.57 -104.91 -0.58 -3.99 16 7 C 0.00 0.03 6.95 -39.19 -0.27 -0.24 16 8 C -0.66 -12.74 5.80 -39.64 -0.23 -12.97 16 9 S 2.60 62.33 4.65 -107.50 -0.50 61.83 16 10 O -0.98 -25.93 17.29 -57.17 -0.99 -26.92 16 11 O -0.98 -24.97 17.03 -57.17 -0.97 -25.95 16 12 C -1.00 -24.66 9.58 30.60 0.29 -24.37 16 13 H 0.11 2.36 7.81 -52.49 -0.41 1.95 16 14 C 0.13 3.38 5.46 -17.82 -0.10 3.28 16 15 N -0.84 -22.53 13.19 55.43 0.73 -21.80 16 16 Si 0.92 18.69 29.54 -169.99 -5.02 13.67 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 20 C 0.03 0.46 9.51 -39.51 -0.38 0.08 16 21 C -0.19 -2.72 10.01 -39.56 -0.40 -3.12 16 22 C 0.19 3.05 7.24 -38.96 -0.28 2.77 16 23 F -0.12 -1.97 16.04 2.25 0.04 -1.93 16 24 C 0.07 0.85 6.59 -67.93 -0.45 0.40 16 25 C -0.19 -2.33 9.63 -26.70 -0.26 -2.58 16 26 C -0.18 -2.16 9.87 -26.70 -0.26 -2.42 16 27 H 0.07 0.95 7.19 -51.93 -0.37 0.57 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.11 1.60 3.83 -52.86 -0.20 1.39 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.18 3.03 2.42 -52.49 -0.13 2.90 16 33 H 0.29 7.07 8.31 -40.82 -0.34 6.74 16 34 H 0.16 2.36 7.72 -52.49 -0.41 1.96 16 35 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.13 2.00 5.28 -51.98 -0.27 1.73 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.36 7.55 -51.93 -0.39 0.97 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -31.75 348.85 -8.84 -40.58 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.28 Total: 8.13 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: -2.68 Total: -34.99 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.25 Total: -30.31 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -1.90 Total: -62.26 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 16 Polarization: 62.33 SS G_CDS: -0.50 Total: 61.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.75 -8.84 -40.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548622270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.475 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds