Wall clock time and date at job start Tue Mar 31 2020 22:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47199 * 2 1 4 4 N 1.46500 * 109.47126 * 240.00409 * 2 1 3 5 5 C 1.34780 * 120.00208 * 84.99525 * 4 2 1 6 6 O 1.21563 * 119.99851 * 0.02562 * 5 4 2 7 7 C 1.47692 * 119.99620 * 180.02562 * 5 4 2 8 8 C 1.39654 * 120.17167 * 359.97438 * 7 5 4 9 9 C 1.37852 * 119.88069 * 180.02562 * 8 7 5 10 10 S 1.76196 * 119.89233 * 180.02562 * 9 8 7 11 11 O 1.42096 * 106.40595 * 203.53919 * 10 9 8 12 12 O 1.42107 * 106.40470 * 336.46045 * 10 9 8 13 13 C 1.76199 * 107.21950 * 89.99797 * 10 9 8 14 14 H 1.07995 * 119.99950 * 0.02562 * 13 10 9 15 15 C 1.37881 * 120.00068 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00088 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99987 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47170 * 89.99832 * 17 15 13 19 19 H 1.48502 * 109.46948 * 209.99969 * 17 15 13 20 20 H 1.48506 * 109.47122 * 329.99559 * 17 15 13 21 21 C 1.38464 * 120.21707 * 0.02562 * 9 8 7 22 22 C 1.38197 * 120.34061 * 359.97438 * 21 9 8 23 23 C 1.38326 * 120.11600 * 0.02562 * 22 21 9 24 24 F 1.35103 * 120.10953 * 180.27268 * 23 22 21 25 25 C 1.52994 * 109.47258 * 120.00360 * 2 1 3 26 26 C 1.52995 * 117.50022 * 8.61888 * 25 2 1 27 27 C 1.53002 * 117.49628 * 299.99499 * 25 2 1 28 28 H 1.08998 * 109.46886 * 299.99869 * 1 2 3 29 29 H 1.09004 * 109.46987 * 59.99745 * 1 2 3 30 30 H 1.08999 * 109.46779 * 180.02562 * 1 2 3 31 31 H 0.97005 * 119.99573 * 265.00286 * 4 2 1 32 32 H 1.08004 * 120.06065 * 359.97438 * 8 7 5 33 33 H 0.97002 * 119.99883 * 179.97438 * 16 15 13 34 34 H 1.07996 * 119.82748 * 180.02562 * 21 9 8 35 35 H 1.07998 * 119.94215 * 180.02562 * 22 21 9 36 36 H 1.08999 * 115.55228 * 154.33009 * 25 2 1 37 37 H 1.09005 * 117.50183 * 0.02562 * 26 25 2 38 38 H 1.09006 * 117.50108 * 145.02408 * 26 25 2 39 39 H 1.09002 * 117.50058 * 214.97915 * 27 25 2 40 40 H 1.09000 * 117.50264 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8583 1.1615 -2.4116 7 6 2.6388 -0.7145 -3.5632 8 6 2.9720 -2.0695 -3.5045 9 6 3.4310 -2.7134 -4.6337 10 16 3.8508 -4.4230 -4.5601 11 8 4.7665 -4.6574 -5.6211 12 8 4.1491 -4.7048 -3.1996 13 6 2.3943 -5.3350 -4.9493 14 1 1.4752 -4.8145 -5.1738 15 6 2.4281 -6.7133 -4.9671 16 7 3.5476 -7.3473 -4.6941 17 14 0.8842 -7.6802 -5.3804 18 1 0.8217 -7.9103 -6.8460 19 1 0.9146 -8.9866 -4.6750 20 1 -0.3113 -6.9122 -4.9484 21 6 3.5631 -2.0211 -5.8255 22 6 3.2359 -0.6801 -5.8939 23 6 2.7741 -0.0202 -4.7693 24 9 2.4491 1.2894 -4.8377 25 6 2.0400 -0.7213 1.2491 26 6 1.0105 -1.4541 2.1116 27 6 1.6358 -0.1495 2.6095 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6317 -1.1527 32 1 2.8711 -2.6117 -2.5759 33 1 3.5713 -8.3169 -4.7063 34 1 3.9228 -2.5319 -6.7064 35 1 3.3411 -0.1465 -6.8269 36 1 3.0324 -1.1641 1.1641 37 1 -0.0302 -1.4228 1.7889 38 1 1.3254 -2.3795 2.5941 39 1 2.3621 -0.2166 3.4196 40 1 1.0069 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548713158.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:07 Heat of formation + Delta-G solvation = -118.702375 kcal Electronic energy + Delta-G solvation = -27322.397436 eV Core-core repulsion = 23144.195571 eV Total energy + Delta-G solvation = -4178.201865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 38.46 seconds Orbital eigenvalues (eV) -48.89821 -40.24480 -38.67131 -37.75222 -35.45039 -34.40163 -34.16007 -33.23691 -31.77744 -30.61543 -29.63012 -26.28922 -25.39047 -23.83326 -22.88497 -22.63369 -20.77676 -20.11765 -18.94051 -18.25809 -17.37052 -16.88536 -16.77221 -16.26567 -15.96042 -15.77380 -15.31640 -15.05759 -14.91787 -14.51568 -14.28939 -14.09075 -13.93908 -13.57607 -13.24317 -13.08415 -12.87087 -12.43866 -12.25812 -12.14709 -12.03564 -11.59301 -11.52467 -11.35679 -11.30128 -11.20152 -10.74141 -10.68949 -10.47299 -10.38291 -10.34372 -10.11424 -9.74801 -9.37522 -9.28592 -9.12292 -9.04612 -8.82022 -6.85335 -5.49823 0.63815 0.98628 1.90131 2.73006 2.93311 2.99522 3.07045 3.12959 3.57638 3.61480 3.96408 4.10190 4.39284 4.46416 4.52341 4.63744 4.68451 4.76404 4.90218 5.04688 5.13342 5.16922 5.22655 5.30703 5.42707 5.49115 5.56602 5.63322 5.65648 5.66722 5.80887 5.87225 5.89761 5.92711 6.06095 6.09535 6.10864 6.39390 6.70900 6.72888 7.16889 7.40207 7.79365 8.13282 8.72740 10.09432 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010074 B = 0.003956 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.815572 B = 7075.773286 C = 8734.277820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.092 0.908 4 N -0.721 5.721 5 C 0.567 3.433 6 O -0.531 6.531 7 C -0.204 4.204 8 C 0.035 3.965 9 C -0.664 4.664 10 S 2.604 3.396 11 O -0.978 6.978 12 O -0.980 6.980 13 C -1.002 5.002 14 H 0.106 0.894 15 C 0.133 3.867 16 N -0.840 5.840 17 Si 0.924 3.076 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.261 1.261 21 C 0.029 3.971 22 C -0.188 4.188 23 C 0.192 3.808 24 F -0.114 7.114 25 C -0.170 4.170 26 C -0.180 4.180 27 C -0.170 4.170 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.406 0.594 32 H 0.151 0.849 33 H 0.293 0.707 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 10.538 7.314 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.071 3.929 3 H 0.110 0.890 4 N -0.374 5.374 5 C 0.355 3.645 6 O -0.409 6.409 7 C -0.209 4.209 8 C 0.016 3.984 9 C -0.743 4.743 10 S 2.783 3.217 11 O -0.975 6.975 12 O -0.977 6.977 13 C -1.136 5.136 14 H 0.125 0.875 15 C -0.085 4.085 16 N -0.469 5.469 17 Si 0.747 3.253 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.185 1.185 21 C 0.011 3.989 22 C -0.208 4.208 23 C 0.171 3.829 24 F -0.092 7.092 25 C -0.189 4.189 26 C -0.217 4.217 27 C -0.207 4.207 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.242 0.758 32 H 0.168 0.832 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.166 0.834 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.065 11.081 7.531 14.001 hybrid contribution -1.353 -0.358 -0.404 1.456 sum -5.417 10.723 7.127 13.968 Atomic orbital electron populations 1.22314 0.95169 1.02576 1.02520 1.20391 0.93860 0.96722 0.81964 0.88969 1.45971 1.67616 1.14528 1.09248 1.17930 0.77460 0.86308 0.82810 1.90801 1.50067 1.15118 1.84889 1.20035 1.11322 0.95596 0.93926 1.21009 0.87823 0.91540 0.98024 1.31810 1.14088 1.29687 0.98758 1.01245 0.76435 0.70204 0.73801 1.93354 1.64323 1.82833 1.57035 1.93348 1.85723 1.82060 1.36571 1.30077 1.16660 1.02356 1.64479 0.87542 1.24764 0.97991 0.96709 0.89080 1.69887 1.26566 1.11913 1.38525 0.86102 0.81091 0.78635 0.79466 1.18992 1.19805 1.18507 1.21119 0.88256 0.92530 0.97033 1.21264 1.05344 0.96048 0.98099 1.17835 0.93614 0.78111 0.93318 1.91585 1.88989 1.31900 1.96762 1.22565 1.00408 1.04632 0.91274 1.23208 0.99035 0.96153 1.03305 1.22940 1.03741 0.97819 0.96222 0.91551 0.91854 0.91656 0.75803 0.83180 0.89600 0.82520 0.83432 0.86872 0.87816 0.88543 0.88552 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 8.08 37.16 0.30 -1.41 16 2 C 0.17 1.94 2.97 -67.93 -0.20 1.74 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 4 N -0.72 -9.33 5.03 -54.80 -0.28 -9.60 16 5 C 0.57 9.06 7.73 -12.40 -0.10 8.96 16 6 O -0.53 -9.76 15.00 5.31 0.08 -9.68 16 7 C -0.20 -3.36 5.88 -104.91 -0.62 -3.97 16 8 C 0.04 0.60 9.01 -39.19 -0.35 0.25 16 9 C -0.66 -12.57 5.81 -39.64 -0.23 -12.80 16 10 S 2.60 62.69 4.65 -107.50 -0.50 62.19 16 11 O -0.98 -25.85 17.15 -57.17 -0.98 -26.83 16 12 O -0.98 -25.50 17.15 -57.17 -0.98 -26.48 16 13 C -1.00 -25.20 9.58 30.60 0.29 -24.91 16 14 H 0.11 2.43 7.81 -52.49 -0.41 2.02 16 15 C 0.13 3.43 5.46 -17.82 -0.10 3.33 16 16 N -0.84 -22.89 13.19 55.43 0.73 -22.16 16 17 Si 0.92 19.12 29.54 -169.99 -5.02 14.09 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 C 0.03 0.48 9.51 -39.51 -0.38 0.11 16 22 C -0.19 -2.73 10.01 -39.56 -0.40 -3.13 16 23 C 0.19 3.10 7.29 -38.96 -0.28 2.81 16 24 F -0.11 -1.91 15.55 2.25 0.04 -1.88 16 25 C -0.17 -1.58 5.87 -90.62 -0.53 -2.11 16 26 C -0.18 -1.47 9.57 -26.73 -0.26 -1.73 16 27 C -0.17 -1.31 9.90 -26.73 -0.26 -1.57 16 28 H 0.07 0.55 7.07 -51.93 -0.37 0.19 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.63 6.97 -51.93 -0.36 0.27 16 31 H 0.41 4.75 6.64 -40.82 -0.27 4.48 16 32 H 0.15 2.31 5.95 -52.48 -0.31 1.99 16 33 H 0.29 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.16 2.37 7.60 -52.49 -0.40 1.97 16 35 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 0.81 5.85 -51.93 -0.30 0.51 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.68 7.61 -51.93 -0.40 0.29 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -32.98 357.27 -9.10 -42.08 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -4.46 Total: 7.30 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -3.11 Total: -34.42 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.46 Total: -31.76 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -1.88 Total: -62.99 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 62.69 SS G_CDS: -0.50 Total: 62.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.98 -9.10 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548713158.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.626 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 38.46 seconds