Wall clock time and date at job start Wed Apr 1 2020 00:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99996 * 2 1 4 4 C 1.50694 * 109.47378 * 270.00237 * 3 2 1 5 5 O 1.21288 * 120.00191 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00232 * 179.97438 * 4 3 2 7 7 C 1.37099 * 119.99726 * 0.02562 * 6 4 3 8 8 H 1.08008 * 120.00126 * 325.66705 * 7 6 4 9 9 C 1.38951 * 120.00293 * 145.67182 * 7 6 4 10 10 N 1.31409 * 119.99401 * 338.41053 * 9 7 6 11 11 Si 1.86795 * 120.00183 * 158.41362 * 9 7 6 12 12 H 1.48495 * 109.47370 * 60.00167 * 11 9 7 13 13 H 1.48505 * 109.46838 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47151 * 299.99581 * 11 9 7 15 15 C 1.46499 * 120.00433 * 179.97438 * 6 4 3 16 16 C 1.53000 * 109.46839 * 85.55799 * 15 6 4 17 17 C 1.50707 * 109.46730 * 180.02562 * 16 15 6 18 18 O 1.20816 * 119.99998 * 0.02562 * 17 16 15 19 19 O 1.34234 * 119.99532 * 180.02562 * 17 16 15 20 20 C 1.39069 * 119.99898 * 180.02562 * 2 1 3 21 21 C 1.39116 * 119.69434 * 4.99486 * 20 2 1 22 22 C 1.38303 * 119.11490 * 180.02562 * 21 20 2 23 23 C 1.38976 * 118.48912 * 0.02562 * 22 21 20 24 24 Cl 1.73607 * 120.34374 * 180.02562 * 23 22 21 25 25 C 1.38119 * 119.30702 * 0.02562 * 23 22 21 26 26 N 1.31978 * 120.84082 * 359.97438 * 25 23 22 27 27 H 1.08999 * 109.46973 * 269.99107 * 1 2 3 28 28 H 1.08998 * 109.47409 * 29.99723 * 1 2 3 29 29 H 1.09009 * 109.46848 * 149.99785 * 1 2 3 30 30 H 1.08997 * 109.46652 * 30.00290 * 3 2 1 31 31 H 1.08997 * 109.46873 * 150.00110 * 3 2 1 32 32 H 0.97000 * 119.99792 * 180.02562 * 10 9 7 33 33 H 1.08994 * 109.46952 * 205.56246 * 15 6 4 34 34 H 1.08999 * 109.46943 * 325.56319 * 15 6 4 35 35 H 1.09003 * 109.47584 * 299.99999 * 16 15 6 36 36 H 1.08999 * 109.46928 * 60.00511 * 16 15 6 37 37 H 0.96698 * 116.99638 * 180.02562 * 19 17 16 38 38 H 1.08003 * 120.44821 * 0.03013 * 21 20 2 39 39 H 1.07998 * 120.76023 * 180.02562 * 22 21 20 40 40 H 1.08004 * 119.58272 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4207 5 8 2.0542 1.0216 -2.3427 6 7 3.1107 2.8516 -1.6670 7 6 3.5562 3.6231 -0.6249 8 1 2.9815 3.6820 0.2877 9 6 4.7470 4.3294 -0.7427 10 7 5.6465 3.9579 -1.6257 11 14 5.0692 5.8067 0.3541 12 1 5.0433 5.3820 1.7768 13 1 6.4004 6.3809 0.0325 14 1 4.0198 6.8321 0.1243 15 6 3.3554 3.2744 -3.0482 16 6 2.1421 4.0488 -3.5670 17 6 2.3935 4.4831 -4.9880 18 8 3.4359 4.2017 -5.5302 19 8 1.4593 5.1826 -5.6512 20 6 2.1603 -1.2044 -0.0005 21 6 1.4623 -2.4031 -0.1063 22 6 2.1658 -3.5938 -0.1051 23 6 3.5505 -3.5456 0.0029 24 17 4.4813 -5.0110 0.0088 25 6 4.1783 -2.3196 0.1056 26 7 3.4803 -1.1996 0.1017 27 1 -0.3633 -0.0002 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1383 0.5138 32 1 6.4780 4.4507 -1.7077 33 1 4.2366 3.9149 -3.0814 34 1 3.5204 2.3966 -3.6730 35 1 1.2608 3.4082 -3.5338 36 1 1.9770 4.9265 -2.9422 37 1 1.6658 5.4385 -6.5606 38 1 0.3854 -2.4039 -0.1883 39 1 1.6509 -4.5397 -0.1862 40 1 5.2542 -2.2770 0.1902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606075700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:44 Heat of formation + Delta-G solvation = -93.076174 kcal Electronic energy + Delta-G solvation = -27400.229658 eV Core-core repulsion = 23241.015284 eV Total energy + Delta-G solvation = -4159.214374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45337 -41.26412 -40.28425 -37.84294 -37.27799 -37.00119 -36.46194 -33.79606 -33.46730 -32.61437 -31.14347 -29.49534 -27.08475 -26.70701 -25.30019 -24.32886 -22.74608 -21.91737 -20.98612 -19.35690 -18.83103 -18.50405 -17.98114 -17.65311 -17.49332 -17.13029 -17.00227 -16.28663 -16.06504 -15.94334 -15.57255 -15.39107 -14.88070 -14.64011 -14.35803 -14.24789 -14.01391 -13.96504 -13.53335 -13.42511 -13.03966 -12.95352 -12.91440 -12.77641 -12.58675 -12.52655 -12.46397 -12.12241 -12.09819 -11.92911 -11.68294 -11.11671 -10.87534 -10.79113 -10.38668 -10.27112 -9.54496 -8.46725 -8.26229 -6.04060 0.20771 0.35349 1.16788 1.20983 1.47129 1.52984 1.61553 1.90689 1.97774 2.13241 2.38947 2.82907 3.09334 3.15071 3.52742 3.89150 3.95727 3.99720 4.09941 4.10539 4.30066 4.37558 4.42529 4.51306 4.67463 4.72752 4.74405 4.81926 4.87962 4.92982 4.97928 5.06550 5.36705 5.43043 5.50826 5.58194 5.92648 5.97476 6.31204 6.41419 6.98070 7.13582 7.16253 7.58917 8.01046 8.74653 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.010812 B = 0.003278 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.165524 B = 8540.581713 C = 9432.326481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.593 5.593 3 C 0.138 3.862 4 C 0.448 3.552 5 O -0.626 6.626 6 N -0.447 5.447 7 C -0.357 4.357 8 H 0.112 0.888 9 C 0.002 3.998 10 N -0.892 5.892 11 Si 0.982 3.018 12 H -0.260 1.260 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.133 3.867 16 C -0.114 4.114 17 C 0.493 3.507 18 O -0.551 6.551 19 O -0.506 6.506 20 C 0.396 3.604 21 C -0.227 4.227 22 C -0.020 4.020 23 C -0.160 4.160 24 Cl -0.062 7.062 25 C 0.151 3.849 26 N -0.563 5.563 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.270 0.730 33 H 0.096 0.904 34 H 0.023 0.977 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.427 0.573 38 H 0.168 0.832 39 H 0.173 0.827 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 -6.415 4.738 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.304 5.304 3 C 0.011 3.989 4 C 0.237 3.763 5 O -0.513 6.513 6 N -0.166 5.166 7 C -0.484 4.484 8 H 0.130 0.870 9 C -0.202 4.202 10 N -0.529 5.529 11 Si 0.805 3.195 12 H -0.184 1.184 13 H -0.219 1.219 14 H -0.185 1.185 15 C 0.008 3.992 16 C -0.152 4.152 17 C 0.337 3.663 18 O -0.442 6.442 19 O -0.320 6.320 20 C 0.161 3.839 21 C -0.252 4.252 22 C -0.046 4.046 23 C -0.192 4.192 24 Cl -0.034 7.034 25 C -0.008 4.008 26 N -0.280 5.280 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.288 0.712 38 H 0.186 0.814 39 H 0.190 0.810 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.387 -6.001 4.552 12.831 hybrid contribution 0.807 0.068 -0.742 1.098 sum -9.581 -5.933 3.810 11.896 Atomic orbital electron populations 1.21930 0.76135 1.03859 1.02782 1.46263 1.06310 1.01613 1.76201 1.20925 0.99092 0.85634 0.93246 1.21699 0.81862 0.80210 0.92521 1.90496 1.57876 1.55412 1.47541 1.43653 1.49179 1.18530 1.05252 1.19822 1.05428 1.26114 0.97067 0.87021 1.26250 0.93840 1.01419 0.98648 1.70069 1.06903 1.38805 1.37144 0.85164 0.77205 0.78245 0.78874 1.18439 1.21891 1.18481 1.20906 0.97422 0.97661 0.83200 1.21602 1.01666 1.02979 0.88977 1.23432 0.80307 0.73336 0.89222 1.90706 1.28736 1.54665 1.70105 1.84502 1.46628 1.67120 1.33719 1.18812 0.88260 0.87319 0.89520 1.21685 1.02663 0.90037 1.10790 1.21529 0.91258 0.99674 0.92141 1.21663 0.93645 0.88360 1.15528 1.98330 1.73220 1.34370 1.97480 1.22556 1.00382 0.85541 0.92341 1.67307 1.07818 1.31379 1.21521 0.90060 0.91322 0.89926 0.86575 0.88777 0.92049 0.88620 0.95830 0.88027 0.86203 0.71186 0.81437 0.80985 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.15 10.28 127.77 1.31 3.47 16 2 N -0.59 -19.54 2.48 -733.18 -1.82 -21.36 16 3 C 0.14 5.24 4.61 85.63 0.39 5.64 16 4 C 0.45 21.04 7.68 87.66 0.67 21.72 16 5 O -0.63 -32.61 16.08 -3.05 -0.05 -32.66 16 6 N -0.45 -21.81 2.55 -635.55 -1.62 -23.44 16 7 C -0.36 -16.87 8.70 84.04 0.73 -16.14 16 8 H 0.11 4.71 6.98 -2.91 -0.02 4.69 16 9 C 0.00 0.08 4.94 84.93 0.42 0.50 16 10 N -0.89 -48.16 11.30 21.66 0.24 -47.91 16 11 Si 0.98 37.74 29.60 68.60 2.03 39.77 16 12 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 13 H -0.29 -11.63 7.11 99.48 0.71 -10.93 16 14 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 15 C 0.13 6.56 4.21 86.38 0.36 6.92 16 16 C -0.11 -4.41 6.11 29.85 0.18 -4.23 16 17 C 0.49 17.96 8.33 71.24 0.59 18.56 16 18 O -0.55 -24.24 16.74 21.99 0.37 -23.87 16 19 O -0.51 -13.28 13.42 -51.46 -0.69 -13.97 16 20 C 0.40 13.52 7.37 133.04 0.98 14.50 16 21 C -0.23 -5.90 9.27 22.50 0.21 -5.69 16 22 C -0.02 -0.47 9.97 22.46 0.22 -0.25 16 23 C -0.16 -4.32 6.34 22.42 0.14 -4.18 16 24 Cl -0.06 -1.44 28.99 -2.72 -0.08 -1.52 16 25 C 0.15 4.90 10.97 84.64 0.93 5.83 16 26 N -0.56 -21.56 9.08 -193.15 -1.75 -23.31 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.61 8.07 -2.39 -0.02 1.60 16 29 H 0.08 1.61 5.98 -2.38 -0.01 1.59 16 30 H 0.12 3.70 7.58 -2.39 -0.02 3.68 16 31 H 0.09 3.98 7.25 -2.39 -0.02 3.96 16 32 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.10 5.20 5.29 -2.39 -0.01 5.19 16 34 H 0.02 1.30 7.52 -2.39 -0.02 1.28 16 35 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 36 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 37 H 0.43 6.90 9.10 -74.06 -0.67 6.23 16 38 H 0.17 3.21 6.02 -2.91 -0.02 3.19 16 39 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -72.78 362.99 4.22 -68.55 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.43 Total: 33.08 kcal Atomic # 6 Polarization: 39.48 SS G_CDS: 7.16 Total: 46.64 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -4.95 Total: -116.02 kcal Atomic # 8 Polarization: -70.13 SS G_CDS: -0.37 Total: -70.50 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -72.78 4.22 -68.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606075700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.521 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds