Wall clock time and date at job start Wed Apr 1 2020 00:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81404 * 103.00234 * 2 1 4 4 C 1.52998 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47070 * 59.99995 * 4 3 2 6 6 C 1.52999 * 109.47082 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.46772 * 184.99645 * 6 4 3 8 8 O 1.42903 * 109.46801 * 179.97438 * 7 6 4 9 9 N 1.46498 * 109.46855 * 299.99972 * 4 3 2 10 10 C 1.34772 * 120.00161 * 155.00220 * 9 4 3 11 11 O 1.21613 * 119.99827 * 359.97438 * 10 9 4 12 12 C 1.47431 * 120.00441 * 180.02562 * 10 9 4 13 13 C 1.39682 * 120.21212 * 359.97438 * 12 10 9 14 14 C 1.37802 * 119.93731 * 179.97438 * 13 12 10 15 15 C 1.38656 * 120.38560 * 0.02562 * 14 13 12 16 16 C 1.37915 * 120.43418 * 359.97438 * 15 14 13 17 17 C 1.39112 * 120.05331 * 359.73549 * 16 15 14 18 18 S 1.76194 * 120.19351 * 180.25908 * 17 16 15 19 19 C 1.76195 * 100.00028 * 6.86976 * 18 17 16 20 20 H 1.08003 * 120.00286 * 5.65796 * 19 18 17 21 21 C 1.38804 * 120.00374 * 185.65952 * 19 18 17 22 22 N 1.31561 * 119.99942 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00304 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46894 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47030 * 119.99972 * 23 21 19 26 26 H 1.48501 * 109.46981 * 239.99796 * 23 21 19 27 27 H 1.09002 * 109.47518 * 59.99466 * 1 2 3 28 28 H 1.08996 * 109.47335 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47054 * 299.99875 * 1 2 3 30 30 H 1.08999 * 109.46914 * 59.99671 * 3 2 1 31 31 H 1.08999 * 109.46983 * 300.00658 * 3 2 1 32 32 H 1.08995 * 109.47086 * 64.99768 * 6 4 3 33 33 H 1.09002 * 109.47018 * 304.99624 * 6 4 3 34 34 H 1.09005 * 109.47174 * 60.00261 * 7 6 4 35 35 H 1.08993 * 109.47299 * 299.99522 * 7 6 4 36 36 H 0.96699 * 113.99865 * 179.97438 * 8 7 6 37 37 H 0.97006 * 120.00047 * 334.99836 * 9 4 3 38 38 H 1.08005 * 120.02863 * 0.02562 * 13 12 10 39 39 H 1.08001 * 119.80783 * 180.02562 * 14 13 12 40 40 H 1.07998 * 119.78611 * 179.97438 * 15 14 13 41 41 H 1.08003 * 119.97337 * 180.02562 * 16 15 14 42 42 H 0.96994 * 120.00094 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 -0.0006 5 1 4.1609 1.4705 -0.8908 6 6 4.0865 3.4308 0.0000 7 6 5.6013 3.6044 -0.1263 8 8 5.9227 4.9969 -0.1263 9 7 4.3059 1.3087 1.1952 10 6 5.5841 0.8815 1.1929 11 8 6.2696 1.0197 0.1979 12 6 6.1511 0.2457 2.3962 13 6 5.3676 0.0842 3.5413 14 6 5.9032 -0.5113 4.6626 15 6 7.2178 -0.9521 4.6625 16 6 8.0054 -0.8006 3.5405 17 6 7.4814 -0.2073 2.3965 18 16 8.4822 -0.0181 0.9588 19 6 9.9137 -0.9135 1.4624 20 1 9.9130 -1.4501 2.3997 21 6 11.0424 -0.9292 0.6546 22 7 11.0431 -0.2759 -0.4873 23 14 12.5598 -1.8791 1.1882 24 1 12.3036 -2.5241 2.5011 25 1 12.8719 -2.9215 0.1777 26 1 13.7097 -0.9473 1.3097 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2372 -0.8899 32 1 3.7455 3.8820 0.9317 33 1 3.5935 3.9178 -0.8414 34 1 5.9424 3.1532 -1.0581 35 1 6.0943 3.1175 0.7150 36 1 6.8687 5.1822 -0.2032 37 1 3.7590 1.1982 1.9888 38 1 4.3428 0.4251 3.5475 39 1 5.2954 -0.6355 5.5467 40 1 7.6278 -1.4171 5.5468 41 1 9.0283 -1.1470 3.5485 42 1 11.8319 -0.2866 -1.0516 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647121772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:55 Heat of formation + Delta-G solvation = -85.820093 kcal Electronic energy + Delta-G solvation = -25058.222310 eV Core-core repulsion = 21447.659504 eV Total energy + Delta-G solvation = -3610.562806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22591 -39.22974 -37.91160 -36.72525 -34.75344 -33.37911 -31.76570 -31.33606 -30.32585 -29.50286 -27.82582 -25.19466 -24.19663 -23.39870 -22.14650 -21.51365 -19.91640 -18.73711 -18.38813 -17.71960 -17.38653 -17.15317 -16.93781 -16.25642 -15.80070 -15.65922 -15.46422 -15.27001 -15.12963 -14.78670 -14.68659 -14.62035 -14.34071 -14.10200 -13.72626 -13.48655 -13.29843 -13.11960 -13.00534 -12.87485 -12.63996 -12.53051 -12.35566 -12.05195 -11.86247 -11.45336 -11.40221 -11.23460 -10.89686 -10.84416 -10.39408 -10.10859 -9.86192 -9.74631 -8.64921 -8.44796 -8.42929 -6.21995 0.07201 0.56245 0.71008 1.27193 1.34631 1.45268 1.67104 1.72381 2.06999 2.16860 2.28671 2.88598 3.07000 3.15288 3.26520 3.74209 3.94932 4.00622 4.04838 4.15733 4.18717 4.28215 4.40844 4.41830 4.47472 4.56526 4.63809 4.65244 4.73028 4.77576 4.88951 4.95632 5.00490 5.11336 5.16462 5.38345 5.47697 5.55140 5.59791 5.69524 6.11415 6.18068 6.66341 6.72770 6.97159 7.41180 8.60701 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011689 B = 0.003544 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.941621 B = 7898.270330 C = 8799.715348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.313 6.313 3 C -0.076 4.076 4 C 0.169 3.831 5 H 0.070 0.930 6 C -0.112 4.112 7 C 0.082 3.918 8 O -0.590 6.590 9 N -0.706 5.706 10 C 0.551 3.449 11 O -0.545 6.545 12 C -0.181 4.181 13 C -0.054 4.054 14 C -0.159 4.159 15 C -0.071 4.071 16 C -0.177 4.177 17 C -0.073 4.073 18 S 0.074 5.926 19 C -0.603 4.603 20 H 0.092 0.908 21 C 0.026 3.974 22 N -0.904 5.904 23 Si 0.990 3.010 24 H -0.258 1.258 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.392 0.608 37 H 0.412 0.588 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.835 4.547 7.209 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.087 6.087 3 C -0.224 4.224 4 C 0.063 3.937 5 H 0.088 0.912 6 C -0.152 4.152 7 C 0.004 3.996 8 O -0.398 6.398 9 N -0.361 5.361 10 C 0.340 3.660 11 O -0.425 6.425 12 C -0.194 4.194 13 C -0.074 4.074 14 C -0.182 4.182 15 C -0.092 4.092 16 C -0.202 4.202 17 C -0.191 4.191 18 S 0.333 5.667 19 C -0.750 4.750 20 H 0.110 0.890 21 C -0.180 4.180 22 N -0.539 5.539 23 Si 0.812 3.188 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.240 0.760 37 H 0.250 0.750 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.165 0.835 41 H 0.135 0.865 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.239 4.450 5.069 22.284 hybrid contribution 1.362 -0.392 1.160 1.832 sum -19.876 4.057 6.229 21.221 Atomic orbital electron populations 1.23427 0.91078 1.07235 1.06122 1.87805 1.10522 1.12194 1.98210 1.23643 0.96191 0.94346 1.08228 1.20512 0.91774 0.92377 0.89051 0.91217 1.21854 0.93802 0.94868 1.04719 1.22199 0.97050 0.80864 0.99449 1.86275 1.31283 1.24921 1.97309 1.45684 1.11681 1.61757 1.16964 1.18329 0.82249 0.78029 0.87373 1.90787 1.59910 1.56431 1.35365 1.19514 0.93567 1.09779 0.96530 1.21431 0.99217 0.95718 0.90986 1.21298 0.95432 1.01929 0.99494 1.21517 0.94457 0.96348 0.96900 1.21439 1.01187 1.03910 0.93670 1.23000 0.97337 0.98733 1.00010 1.84795 1.08050 1.60621 1.13279 1.24297 1.02611 1.37200 1.10866 0.89032 1.26094 1.01910 0.95834 0.94158 1.70124 1.31116 1.40798 1.11843 0.85032 0.76815 0.78013 0.78942 1.18212 1.19674 1.19449 0.89461 0.87750 0.88859 0.86667 0.86579 0.89463 0.88611 0.95146 0.95269 0.75957 0.75018 0.82472 0.81876 0.83511 0.86532 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.76 113.37 1.22 0.08 16 2 S -0.31 -6.02 21.96 -56.49 -1.24 -7.26 16 3 C -0.08 -1.10 5.50 71.98 0.40 -0.70 16 4 C 0.17 3.85 2.31 44.99 0.10 3.95 16 5 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 6 C -0.11 -2.52 5.26 30.59 0.16 -2.36 16 7 C 0.08 2.61 5.65 71.98 0.41 3.01 16 8 O -0.59 -17.46 13.66 -148.98 -2.04 -19.49 16 9 N -0.71 -18.25 4.52 -445.81 -2.01 -20.26 16 10 C 0.55 20.65 6.31 86.67 0.55 21.19 16 11 O -0.55 -25.32 10.91 -4.07 -0.04 -25.36 16 12 C -0.18 -6.91 5.89 -19.95 -0.12 -7.03 16 13 C -0.05 -1.47 9.53 22.52 0.21 -1.25 16 14 C -0.16 -3.98 10.02 22.27 0.22 -3.76 16 15 C -0.07 -2.19 10.03 22.29 0.22 -1.97 16 16 C -0.18 -7.43 9.22 22.40 0.21 -7.22 16 17 C -0.07 -3.40 6.14 23.04 0.14 -3.26 16 18 S 0.07 4.21 18.56 -56.49 -1.05 3.17 16 19 C -0.60 -35.32 9.00 67.96 0.61 -34.71 16 20 H 0.09 5.11 4.98 -2.91 -0.01 5.09 16 21 C 0.03 1.48 5.49 84.87 0.47 1.94 16 22 N -0.90 -55.20 13.22 21.65 0.29 -54.91 16 23 Si 0.99 44.23 29.55 68.60 2.03 46.26 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.03 1.10 7.84 -2.38 -0.02 1.08 16 35 H 0.03 1.09 5.64 -2.39 -0.01 1.07 16 36 H 0.39 9.48 9.12 -74.06 -0.68 8.80 16 37 H 0.41 7.97 6.63 -92.70 -0.61 7.35 16 38 H 0.16 2.83 6.40 -2.91 -0.02 2.81 16 39 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.12 5.33 5.04 -2.91 -0.01 5.31 16 42 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.09 369.46 0.51 -79.58 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.22 Total: 30.36 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 4.80 Total: -32.08 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.73 Total: -75.17 kcal Atomic # 8 Polarization: -42.78 SS G_CDS: -2.08 Total: -44.86 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.29 Total: -4.09 kcal Total: -80.09 0.51 -79.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647121772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.244 kcal (2) G-P(sol) polarization free energy of solvation -80.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds