Wall clock time and date at job start Wed Apr 1 2020 00:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81394 * 103.00193 * 2 1 4 4 C 1.53001 * 109.47572 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46997 * 305.00726 * 4 3 2 6 6 C 1.52994 * 109.47218 * 185.00073 * 4 3 2 7 7 C 1.53004 * 109.46850 * 175.00230 * 6 4 3 8 8 O 1.42903 * 109.47221 * 179.97438 * 7 6 4 9 9 N 1.46501 * 109.46822 * 65.00049 * 4 3 2 10 10 C 1.34780 * 120.00293 * 205.00400 * 9 4 3 11 11 O 1.21605 * 119.99621 * 359.97438 * 10 9 4 12 12 C 1.47423 * 119.99995 * 179.72523 * 10 9 4 13 13 C 1.39672 * 120.21815 * 0.27339 * 12 10 9 14 14 C 1.37809 * 119.94183 * 180.02562 * 13 12 10 15 15 C 1.38655 * 120.37762 * 0.02562 * 14 13 12 16 16 C 1.37909 * 120.44198 * 0.02562 * 15 14 13 17 17 C 1.39113 * 120.04695 * 359.67326 * 16 15 14 18 18 S 1.76200 * 120.18927 * 180.30346 * 17 16 15 19 19 C 1.76198 * 100.00008 * 6.85364 * 18 17 16 20 20 H 1.07996 * 120.00208 * 5.65447 * 19 18 17 21 21 C 1.38816 * 119.99989 * 185.65415 * 19 18 17 22 22 N 1.31556 * 119.99749 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47084 * 90.00618 * 23 21 19 25 25 H 1.48501 * 109.47037 * 210.00013 * 23 21 19 26 26 H 1.48499 * 109.47449 * 330.00274 * 23 21 19 27 27 H 1.09000 * 109.46829 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46918 * 299.99349 * 1 2 3 29 29 H 1.08999 * 109.46804 * 60.00257 * 1 2 3 30 30 H 1.09004 * 109.46762 * 59.99702 * 3 2 1 31 31 H 1.09001 * 109.47313 * 300.00158 * 3 2 1 32 32 H 1.09000 * 109.47072 * 295.00201 * 6 4 3 33 33 H 1.08996 * 109.47230 * 55.00448 * 6 4 3 34 34 H 1.09000 * 109.47260 * 299.99856 * 7 6 4 35 35 H 1.09005 * 109.47279 * 60.00111 * 7 6 4 36 36 H 0.96695 * 114.00272 * 179.97438 * 8 7 6 37 37 H 0.97002 * 119.99859 * 24.99926 * 9 4 3 38 38 H 1.08002 * 120.03095 * 0.02767 * 13 12 10 39 39 H 1.08002 * 119.81315 * 180.02562 * 14 13 12 40 40 H 1.08006 * 119.77984 * 179.97438 * 15 14 13 41 41 H 1.08001 * 119.97854 * 179.97438 * 16 15 14 42 42 H 0.96995 * 119.99918 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1695 1.3952 0.8426 6 6 4.0870 3.4252 0.1264 7 6 5.6032 3.5880 0.2524 8 8 5.9253 4.9754 0.3692 9 7 4.2939 1.4149 -1.2509 10 6 5.5719 0.9896 -1.2982 11 8 6.2674 1.0422 -0.3020 12 6 6.1250 0.4556 -2.5561 13 6 5.3304 0.3936 -3.7030 14 6 5.8531 -0.1072 -4.8757 15 6 7.1656 -0.5515 -4.9250 16 6 7.9638 -0.4985 -3.8016 17 6 7.4566 0.0094 -2.6100 18 16 8.4756 0.0862 -1.1746 19 6 10.0213 -0.3945 -1.8706 20 1 10.1116 -0.5396 -2.9369 21 6 11.1230 -0.5868 -1.0482 22 7 11.0128 -0.4105 0.2508 23 14 12.7614 -1.0971 -1.7860 24 1 13.5457 0.1144 -2.1356 25 1 13.5177 -1.9084 -0.7986 26 1 12.5234 -1.9031 -3.0104 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8031 2.2370 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 3.7370 3.9557 -0.7592 33 1 3.6026 3.8370 1.0117 34 1 5.9532 3.0576 1.1379 35 1 6.0877 3.1763 -0.6330 36 1 6.8719 5.1536 0.4534 37 1 3.7392 1.3732 -2.0456 38 1 4.3072 0.7378 -3.6709 39 1 5.2369 -0.1537 -5.7615 40 1 7.5652 -0.9425 -5.8490 41 1 8.9850 -0.8470 -3.8483 42 1 11.7825 -0.5452 0.8255 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647121775.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:53:01 Heat of formation + Delta-G solvation = -85.964242 kcal Electronic energy + Delta-G solvation = -25050.219287 eV Core-core repulsion = 21439.650230 eV Total energy + Delta-G solvation = -3610.569057 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.22834 -39.23063 -37.91225 -36.72735 -34.75384 -33.38257 -31.76582 -31.33680 -30.32659 -29.50753 -27.82379 -25.19693 -24.19721 -23.39985 -22.14837 -21.52025 -19.91760 -18.73880 -18.38562 -17.71777 -17.38640 -17.15612 -16.94104 -16.25085 -15.81761 -15.66307 -15.45929 -15.26839 -15.12199 -14.79122 -14.68408 -14.63546 -14.34221 -14.09935 -13.69641 -13.49980 -13.29042 -13.13677 -12.98972 -12.88266 -12.65949 -12.53837 -12.35567 -12.05452 -11.86483 -11.46631 -11.39580 -11.22286 -10.89424 -10.84415 -10.39485 -10.10820 -9.87387 -9.74287 -8.65334 -8.44813 -8.42911 -6.22104 0.07163 0.56210 0.71240 1.26945 1.35773 1.44600 1.66694 1.72258 2.06737 2.16688 2.28355 2.88678 3.06954 3.15060 3.26706 3.73847 3.94933 4.00830 4.04694 4.15835 4.18525 4.28102 4.40630 4.41621 4.46620 4.56384 4.63791 4.65145 4.73278 4.77566 4.88855 4.95353 5.00611 5.11288 5.16407 5.38124 5.47511 5.54950 5.59692 5.69473 6.11244 6.17946 6.66090 6.72829 6.97109 7.41034 8.60672 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.003526 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.755878 B = 7938.718713 C = 8868.860610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.316 6.316 3 C -0.075 4.075 4 C 0.169 3.831 5 H 0.069 0.931 6 C -0.112 4.112 7 C 0.082 3.918 8 O -0.590 6.590 9 N -0.706 5.706 10 C 0.551 3.449 11 O -0.545 6.545 12 C -0.181 4.181 13 C -0.054 4.054 14 C -0.159 4.159 15 C -0.071 4.071 16 C -0.177 4.177 17 C -0.073 4.073 18 S 0.074 5.926 19 C -0.604 4.604 20 H 0.092 0.908 21 C 0.026 3.974 22 N -0.904 5.904 23 Si 0.990 3.010 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.259 1.259 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.392 0.608 37 H 0.412 0.588 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.895 5.220 -6.666 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.091 6.091 3 C -0.223 4.223 4 C 0.063 3.937 5 H 0.087 0.913 6 C -0.152 4.152 7 C 0.004 3.996 8 O -0.398 6.398 9 N -0.361 5.361 10 C 0.340 3.660 11 O -0.425 6.425 12 C -0.194 4.194 13 C -0.074 4.074 14 C -0.182 4.182 15 C -0.092 4.092 16 C -0.202 4.202 17 C -0.191 4.191 18 S 0.332 5.668 19 C -0.751 4.751 20 H 0.110 0.890 21 C -0.180 4.180 22 N -0.539 5.539 23 Si 0.811 3.189 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.183 1.183 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.240 0.760 37 H 0.250 0.750 38 H 0.176 0.824 39 H 0.181 0.819 40 H 0.165 0.835 41 H 0.135 0.865 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.346 4.717 -4.403 22.299 hybrid contribution 1.460 0.027 -1.386 2.014 sum -19.885 4.744 -5.789 21.247 Atomic orbital electron populations 1.23422 0.90967 1.07239 1.06141 1.87814 1.10653 1.12365 1.98224 1.23632 0.96189 0.94227 1.08252 1.20503 0.91933 0.93615 0.87637 0.91260 1.21856 0.93786 0.94979 1.04628 1.22203 0.97033 0.80985 0.99345 1.86272 1.31179 1.25379 1.96965 1.45679 1.11557 1.65081 1.13793 1.18329 0.82270 0.77394 0.87985 1.90786 1.59054 1.55839 1.36802 1.19510 0.93857 1.10414 0.95621 1.21431 0.99193 0.95801 0.90928 1.21302 0.95500 1.02425 0.98928 1.21518 0.94380 0.96071 0.97253 1.21438 1.01269 1.04257 0.93248 1.23003 0.97411 0.98451 1.00220 1.84816 0.99686 1.75246 1.07007 1.24267 0.98417 1.54689 0.97678 0.89012 1.26096 1.03363 0.93654 0.94866 1.70120 1.32762 1.46175 1.04824 0.85082 0.76528 0.78745 0.78509 1.19124 1.19843 1.18273 0.87764 0.89400 0.88862 0.86499 0.86650 0.89427 0.88637 0.95166 0.95238 0.75962 0.75027 0.82428 0.81862 0.83511 0.86530 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.76 113.37 1.22 0.08 16 2 S -0.32 -6.14 22.11 -56.49 -1.25 -7.39 16 3 C -0.07 -1.09 5.46 71.98 0.39 -0.69 16 4 C 0.17 3.86 2.25 44.99 0.10 3.96 16 5 H 0.07 2.09 7.58 -2.39 -0.02 2.07 16 6 C -0.11 -2.53 5.26 30.59 0.16 -2.37 16 7 C 0.08 2.61 5.65 71.98 0.41 3.02 16 8 O -0.59 -17.53 13.66 -148.98 -2.04 -19.57 16 9 N -0.71 -18.15 4.69 -445.80 -2.09 -20.24 16 10 C 0.55 20.61 6.32 86.66 0.55 21.15 16 11 O -0.55 -25.32 10.90 -4.05 -0.04 -25.36 16 12 C -0.18 -6.89 5.89 -19.95 -0.12 -7.01 16 13 C -0.05 -1.46 9.53 22.51 0.21 -1.24 16 14 C -0.16 -3.96 10.02 22.27 0.22 -3.74 16 15 C -0.07 -2.18 10.02 22.29 0.22 -1.96 16 16 C -0.18 -7.42 9.22 22.40 0.21 -7.21 16 17 C -0.07 -3.40 6.14 23.04 0.14 -3.26 16 18 S 0.07 4.21 18.56 -56.49 -1.05 3.16 16 19 C -0.60 -35.31 9.00 67.96 0.61 -34.69 16 20 H 0.09 5.09 4.98 -2.91 -0.01 5.08 16 21 C 0.03 1.49 5.49 84.87 0.47 1.96 16 22 N -0.90 -55.27 13.22 21.65 0.29 -54.98 16 23 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 1.09 7.84 -2.39 -0.02 1.08 16 35 H 0.03 1.10 5.64 -2.38 -0.01 1.09 16 36 H 0.39 9.53 9.12 -74.06 -0.68 8.86 16 37 H 0.41 7.81 6.63 -92.71 -0.61 7.20 16 38 H 0.16 2.78 6.40 -2.91 -0.02 2.76 16 39 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 40 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.12 5.32 5.04 -2.91 -0.01 5.30 16 42 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -80.28 369.69 0.42 -79.86 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.22 Total: 30.35 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 4.80 Total: -32.00 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.80 Total: -75.23 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -2.08 Total: -44.93 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.30 Total: -4.23 kcal Total: -80.28 0.42 -79.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647121775.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.109 kcal (2) G-P(sol) polarization free energy of solvation -80.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds