Wall clock time and date at job start Wed Apr 1 2020 00:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35686 * 117.00220 * 2 1 4 4 C 1.38621 * 119.63926 * 180.02562 * 3 2 1 5 5 C 1.39172 * 119.05395 * 180.02562 * 4 3 2 6 6 N 1.39555 * 120.81655 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00070 * 147.54919 * 6 5 4 8 8 O 1.21590 * 119.99815 * 354.70547 * 7 6 5 9 9 N 1.34771 * 120.00419 * 174.42207 * 7 6 5 10 10 C 1.47432 * 125.64585 * 359.69781 * 9 7 6 11 11 C 1.55127 * 104.72017 * 155.81507 * 10 9 7 12 12 C 1.55156 * 101.48667 * 37.29539 * 11 10 9 13 13 O 1.42899 * 110.72249 * 82.69894 * 12 11 10 14 14 C 1.50706 * 110.86907 * 205.89640 * 12 11 10 15 15 H 1.07999 * 120.00298 * 355.06450 * 14 12 11 16 16 C 1.37881 * 120.00005 * 175.06461 * 14 12 11 17 17 N 1.31514 * 119.99601 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00168 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46999 * 60.00050 * 18 16 14 20 20 H 1.48501 * 109.46864 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46975 * 299.99731 * 18 16 14 22 22 C 1.47023 * 125.65147 * 179.97438 * 9 7 6 23 23 C 1.39496 * 118.36017 * 0.24986 * 5 4 3 24 24 C 1.37974 * 119.18724 * 359.49963 * 23 5 4 25 25 Cl 1.73608 * 119.56190 * 180.25109 * 24 23 5 26 26 N 1.32148 * 120.87787 * 0.51518 * 24 23 5 27 27 H 1.08999 * 109.47498 * 60.00330 * 1 2 3 28 28 H 1.09006 * 109.47080 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47298 * 300.00050 * 1 2 3 30 30 H 1.08001 * 120.47712 * 0.04104 * 4 3 2 31 31 H 0.97006 * 120.00363 * 327.55208 * 6 5 4 32 32 H 1.08994 * 110.36346 * 274.73959 * 10 9 7 33 33 H 1.08997 * 110.36482 * 37.06398 * 10 9 7 34 34 H 1.09002 * 111.19226 * 279.18917 * 11 10 9 35 35 H 1.09004 * 110.90888 * 155.27335 * 11 10 9 36 36 H 0.96701 * 114.00475 * 185.02189 * 13 12 11 37 37 H 0.97005 * 120.00146 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.88420 * 300.44805 * 22 9 7 39 39 H 1.09003 * 109.87935 * 61.45743 * 22 9 7 40 40 H 1.08006 * 120.40876 * 179.75134 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4297 1.2727 -0.0005 5 6 4.0489 2.5191 0.0000 6 7 5.4404 2.6262 0.0000 7 6 6.0367 3.6602 -0.6258 8 8 5.3704 4.4462 -1.2712 9 7 7.3708 3.8263 -0.5316 10 6 8.2932 2.9596 0.2245 11 6 9.6719 3.1615 -0.4574 12 6 9.6290 4.6744 -0.7990 13 8 10.0011 5.4596 0.3355 14 6 10.5191 4.9848 -1.9748 15 1 11.1371 4.2098 -2.4038 16 6 10.5446 6.2581 -2.5031 17 7 9.7917 7.2017 -1.9811 18 14 11.6473 6.6427 -3.9610 19 1 11.2644 5.7848 -5.1110 20 1 11.4916 8.0711 -4.3361 21 1 13.0619 6.3778 -3.5951 22 6 8.1467 4.9049 -1.1609 23 6 3.2444 3.6587 0.0064 24 6 1.8723 3.5136 0.0015 25 17 0.8618 4.9253 0.0028 26 7 1.3171 2.3145 0.0010 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 4.0198 0.3681 -0.0016 31 1 5.9784 1.9564 0.4504 32 1 8.3349 3.2695 1.2686 33 1 7.9822 1.9176 0.1492 34 1 9.7562 2.5590 -1.3619 35 1 10.4844 2.9402 0.2347 36 1 9.9168 6.4132 0.1986 37 1 9.8098 8.0976 -2.3524 38 1 8.0193 4.8706 -2.2428 39 1 7.8157 5.8709 -0.7793 40 1 3.6900 4.6425 0.0111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670822944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:58 Heat of formation + Delta-G solvation = -93.458442 kcal Electronic energy + Delta-G solvation = -27155.809344 eV Core-core repulsion = 22996.578393 eV Total energy + Delta-G solvation = -4159.230951 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 8.81 seconds Orbital eigenvalues (eV) -42.27858 -41.25318 -39.57975 -38.84224 -37.72731 -36.30252 -36.12818 -34.22185 -32.59535 -31.82272 -31.22350 -29.57150 -28.22234 -27.07245 -24.89412 -24.76679 -23.63214 -21.52510 -21.35471 -20.06977 -19.22914 -18.97641 -18.30388 -17.59208 -17.27147 -17.13651 -16.88615 -16.67183 -16.35716 -16.20183 -15.71642 -15.26409 -15.09950 -14.88937 -14.76860 -14.71116 -13.94576 -13.61967 -13.51750 -13.37845 -13.07154 -12.84644 -12.82202 -12.55266 -12.47913 -12.37680 -12.32570 -12.30185 -12.08566 -11.70365 -11.54575 -11.17164 -11.00648 -10.64649 -10.30173 -10.07730 -9.65686 -9.51645 -8.26117 -6.41309 -0.25839 -0.03068 0.56122 1.23447 1.43682 1.44608 1.51771 1.85663 2.06205 2.38055 2.48418 2.73759 3.01140 3.37493 3.73852 3.78430 3.82741 3.98086 4.10389 4.17505 4.32182 4.38854 4.45614 4.48168 4.58896 4.68522 4.70687 4.82793 4.84578 5.04272 5.12551 5.17500 5.35028 5.37118 5.48534 5.74862 5.86727 6.01075 6.08288 6.45791 6.64218 6.77873 7.26038 7.28295 7.35966 8.79517 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.018251 B = 0.002595 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.817950 B =10787.809691 C =11545.207888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.303 6.303 3 C 0.352 3.648 4 C -0.207 4.207 5 C 0.260 3.740 6 N -0.658 5.658 7 C 0.712 3.288 8 O -0.612 6.612 9 N -0.623 5.623 10 C 0.100 3.900 11 C -0.111 4.111 12 C 0.233 3.767 13 O -0.586 6.586 14 C -0.557 4.557 15 H 0.068 0.932 16 C 0.027 3.973 17 N -0.914 5.914 18 Si 0.960 3.040 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.139 3.861 23 C -0.208 4.208 24 C 0.224 3.776 25 Cl -0.021 7.021 26 N -0.559 5.559 27 H 0.055 0.945 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.185 0.815 31 H 0.431 0.569 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 -15.036 6.932 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.209 6.209 3 C 0.173 3.827 4 C -0.231 4.231 5 C 0.154 3.846 6 N -0.308 5.308 7 C 0.415 3.585 8 O -0.491 6.491 9 N -0.358 5.358 10 C -0.021 4.021 11 C -0.149 4.149 12 C 0.192 3.808 13 O -0.394 6.394 14 C -0.595 4.595 15 H 0.086 0.914 16 C -0.174 4.174 17 N -0.553 5.553 18 Si 0.785 3.215 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.193 1.193 22 C 0.016 3.984 23 C -0.232 4.232 24 C 0.062 3.938 25 Cl 0.007 6.993 26 N -0.288 5.288 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.078 0.922 30 H 0.202 0.798 31 H 0.272 0.728 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.795 -15.076 6.715 22.164 hybrid contribution 1.081 1.695 -1.040 2.264 sum -13.713 -13.381 5.675 19.982 Atomic orbital electron populations 1.23147 0.75351 1.05099 1.02441 1.86260 1.24628 1.22598 1.87415 1.19275 0.88733 0.83988 0.90742 1.20842 0.92344 0.98091 1.11809 1.17227 0.82724 0.92457 0.92184 1.42272 1.04010 1.27829 1.56713 1.15571 0.81280 0.81588 0.80074 1.90933 1.63572 1.47209 1.47409 1.47935 1.03970 1.31227 1.52716 1.22622 0.88861 0.94876 0.95724 1.22772 0.96478 0.94406 1.01195 1.19721 0.87467 0.89223 0.84349 1.86100 1.90275 1.22445 1.40595 1.21805 1.25790 0.96386 1.15490 0.91385 1.25781 0.96144 0.96244 0.99275 1.69786 1.39690 1.03122 1.42731 0.85578 0.79469 0.76959 0.79474 1.19852 1.21215 1.19303 1.22476 0.93171 0.87456 0.95330 1.21623 0.91943 1.00927 1.08752 1.20829 0.88018 0.87735 0.97176 1.98406 1.69599 1.34969 1.96289 1.66538 1.41644 0.97681 1.22922 0.92639 0.85242 0.92221 0.79816 0.72789 0.90342 0.87166 0.89554 0.88956 0.77556 0.92127 0.94713 0.94807 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.38 113.37 1.18 1.64 16 2 O -0.30 -5.75 10.47 -90.04 -0.94 -6.69 16 3 C 0.35 8.03 7.48 84.70 0.63 8.66 16 4 C -0.21 -4.26 9.98 22.59 0.23 -4.03 16 5 C 0.26 6.72 6.32 38.44 0.24 6.96 16 6 N -0.66 -16.60 5.30 -316.76 -1.68 -18.28 16 7 C 0.71 25.74 8.26 179.06 1.48 27.22 16 8 O -0.61 -27.55 14.37 -4.00 -0.06 -27.61 16 9 N -0.62 -22.89 3.32 -829.33 -2.76 -25.65 16 10 C 0.10 2.78 6.63 86.93 0.58 3.35 16 11 C -0.11 -3.76 6.24 32.06 0.20 -3.56 16 12 C 0.23 10.57 0.85 -10.35 -0.01 10.56 16 13 O -0.59 -28.02 13.07 -148.98 -1.95 -29.97 16 14 C -0.56 -27.96 8.13 25.60 0.21 -27.75 16 15 H 0.07 3.31 7.78 -2.91 -0.02 3.29 16 16 C 0.03 1.37 5.28 84.66 0.45 1.81 16 17 N -0.91 -48.59 10.96 21.45 0.24 -48.36 16 18 Si 0.96 41.17 29.54 68.60 2.03 43.20 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 22 C 0.14 6.51 5.23 86.73 0.45 6.96 16 23 C -0.21 -6.28 8.49 22.51 0.19 -6.09 16 24 C 0.22 6.32 7.26 84.58 0.61 6.93 16 25 Cl -0.02 -0.55 29.10 -2.72 -0.08 -0.63 16 26 N -0.56 -14.52 9.19 -299.99 -2.76 -17.28 16 27 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 30 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.43 7.21 7.27 -92.70 -0.67 6.54 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.11 1.95 7.21 -2.39 -0.02 1.93 16 34 H 0.09 2.80 8.04 -2.39 -0.02 2.78 16 35 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 36 H 0.38 18.96 7.45 -74.06 -0.55 18.41 16 37 H 0.27 13.87 8.31 -92.70 -0.77 13.10 16 38 H 0.03 1.82 7.81 -2.39 -0.02 1.80 16 39 H 0.03 1.78 7.92 -2.39 -0.02 1.76 16 40 H 0.14 4.88 6.48 -2.91 -0.02 4.86 16 Total: -1.00 -65.46 354.16 -1.63 -67.09 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.11 Total: 31.49 kcal Atomic # 6 Polarization: 26.24 SS G_CDS: 6.44 Total: 32.67 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -6.96 Total: -109.56 kcal Atomic # 8 Polarization: -61.32 SS G_CDS: -2.95 Total: -64.26 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -65.46 -1.63 -67.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670822944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.367 kcal (2) G-P(sol) polarization free energy of solvation -65.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.81 seconds