Wall clock time and date at job start Tue Mar 31 2020 23:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86794 * 119.99741 * 2 1 4 4 H 1.48503 * 109.47222 * 274.98374 * 3 2 1 5 5 H 1.48506 * 109.47243 * 34.98421 * 3 2 1 6 6 H 1.48492 * 109.47410 * 154.98345 * 3 2 1 7 7 C 1.39904 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99825 * 147.61500 * 7 2 1 9 9 C 1.41153 * 120.00291 * 327.61592 * 7 2 1 10 10 C 1.40861 * 120.16795 * 157.94692 * 9 7 2 11 11 C 1.36372 * 119.83322 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16702 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83121 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00150 * 37.76193 * 13 12 11 15 15 O 1.21275 * 119.99851 * 356.69563 * 14 13 12 16 16 C 1.50697 * 119.99866 * 176.69555 * 14 13 12 17 17 O 1.45204 * 109.47211 * 179.97438 * 16 14 13 18 18 C 1.34739 * 117.00165 * 180.02562 * 17 16 14 19 19 O 1.21512 * 120.00099 * 359.97438 * 18 17 16 20 20 C 1.47471 * 119.99882 * 180.02562 * 18 17 16 21 21 C 1.39792 * 120.09061 * 179.97438 * 20 18 17 22 22 C 1.37685 * 119.90436 * 180.02562 * 21 20 18 23 23 C 1.39007 * 120.09230 * 0.02562 * 22 21 20 24 24 O 1.35699 * 119.90689 * 180.02562 * 23 22 21 25 25 C 1.39019 * 120.18858 * 0.27118 * 23 22 21 26 26 C 1.37681 * 120.08858 * 359.45374 * 25 23 22 27 27 C 1.39480 * 120.33062 * 0.25593 * 12 11 10 28 28 C 1.36380 * 120.16857 * 359.48202 * 27 12 11 29 29 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.08360 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.91634 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99947 * 217.76346 * 13 12 11 33 33 H 1.09010 * 109.47063 * 60.00302 * 16 14 13 34 34 H 1.08994 * 109.47507 * 300.00122 * 16 14 13 35 35 H 1.07997 * 120.05122 * 0.02562 * 21 20 18 36 36 H 1.08003 * 119.94921 * 179.97438 * 22 21 20 37 37 H 0.96698 * 114.00140 * 89.99817 * 24 23 22 38 38 H 1.08001 * 119.95113 * 179.72569 * 25 23 22 39 39 H 1.07997 * 120.04229 * 180.24923 * 26 25 23 40 40 H 1.07996 * 119.91341 * 179.74369 * 27 12 11 41 41 H 1.08004 * 120.08327 * 180.25948 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5889 1.4122 0.5920 7 6 2.0083 -1.2116 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4673 -2.3387 0.6557 10 6 1.8854 -3.6349 0.2962 11 6 1.3577 -4.7191 0.9334 12 6 0.4060 -4.5469 1.9384 13 7 -0.1285 -5.6588 2.5840 14 6 0.6567 -6.7180 2.8633 15 8 1.8136 -6.7279 2.4995 16 6 0.0972 -7.8900 3.6277 17 8 1.1317 -8.8943 3.7995 18 6 0.7921 -10.0143 4.4671 19 8 -0.3374 -10.1480 4.8945 20 6 1.7917 -11.0775 4.6800 21 6 1.4417 -12.2401 5.3728 22 6 2.3781 -13.2300 5.5698 23 6 3.6702 -13.0743 5.0814 24 8 4.5900 -14.0526 5.2773 25 6 4.0242 -11.9171 4.3972 26 6 3.0923 -10.9248 4.1909 27 6 -0.0173 -3.2669 2.2959 28 6 0.5052 -2.1729 1.6713 29 1 -0.4850 0.8400 -0.0004 30 1 2.6220 -3.7698 -0.4821 31 1 1.6770 -5.7135 0.6585 32 1 -1.0660 -5.6711 2.8326 33 1 -0.7376 -8.3198 3.0740 34 1 -0.2496 -7.5543 4.6050 35 1 0.4382 -12.3617 5.7530 36 1 2.1086 -14.1283 6.1054 37 1 4.6150 -14.7156 4.5739 38 1 5.0304 -11.7982 4.0233 39 1 3.3671 -10.0278 3.6558 40 1 -0.7576 -3.1416 3.0721 41 1 0.1796 -1.1821 1.9521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007745825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:48 Heat of formation + Delta-G solvation = -109.748793 kcal Electronic energy + Delta-G solvation = -26937.610689 eV Core-core repulsion = 22747.813434 eV Total energy + Delta-G solvation = -4189.797255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.95210 -39.95070 -39.40046 -37.44808 -37.03411 -36.37899 -34.51367 -33.13041 -31.59389 -30.93528 -29.79241 -29.49885 -28.15984 -25.00332 -24.15568 -23.21022 -21.84502 -21.27408 -20.79208 -19.85848 -18.95489 -18.40389 -17.60967 -17.40757 -16.80278 -16.60864 -16.17717 -15.87111 -15.72292 -15.23330 -14.90857 -14.84563 -14.15521 -14.00025 -13.91553 -13.51385 -13.23093 -12.87473 -12.75779 -12.67432 -12.47894 -12.38855 -12.13528 -12.03431 -11.50421 -11.18785 -10.99155 -10.98291 -10.93026 -10.85599 -10.57860 -10.21706 -9.80325 -9.54003 -9.51711 -9.21885 -9.12842 -8.76133 -7.59898 -7.21282 -6.93895 -4.32185 0.18424 0.87409 2.13501 2.15146 2.49207 2.89021 3.02632 3.05309 3.08818 3.23003 3.27686 3.62674 3.69027 3.85890 4.36064 4.44810 4.46262 4.49395 4.82311 4.83576 4.97935 4.98904 5.01152 5.24610 5.53207 5.62543 5.66125 5.83843 5.90548 6.09659 6.14677 6.20594 6.36950 6.69241 6.88593 6.95300 7.07824 7.09333 7.22689 7.43917 7.51531 7.62314 7.82356 7.97188 8.17973 8.20875 8.49456 8.64217 8.79253 8.93492 9.97262 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.001740 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.875987 B =16087.540270 C =16919.455763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.463 4.463 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.224 4.224 11 C -0.064 4.064 12 C -0.026 4.026 13 N -0.642 5.642 14 C 0.498 3.502 15 O -0.512 6.512 16 C 0.053 3.947 17 O -0.324 6.324 18 C 0.511 3.489 19 O -0.508 6.508 20 C -0.136 4.136 21 C -0.036 4.036 22 C -0.161 4.161 23 C 0.142 3.858 24 O -0.498 6.498 25 C -0.159 4.159 26 C -0.039 4.039 27 C -0.099 4.099 28 C -0.171 4.171 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.396 0.604 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.397 0.603 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.090 0.910 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -21.158 8.533 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.101 0.899 9 C 0.110 3.890 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.118 4.118 13 N -0.287 5.287 14 C 0.283 3.717 15 O -0.387 6.387 16 C -0.025 4.025 17 O -0.239 6.239 18 C 0.356 3.644 19 O -0.398 6.398 20 C -0.137 4.137 21 C -0.055 4.055 22 C -0.180 4.180 23 C 0.098 3.902 24 O -0.309 6.309 25 C -0.178 4.178 26 C -0.057 4.057 27 C -0.119 4.119 28 C -0.191 4.191 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.255 0.745 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.108 0.892 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.235 -20.737 8.887 22.595 hybrid contribution -0.505 0.572 -0.226 0.796 sum 0.730 -20.165 8.661 21.959 Atomic orbital electron populations 1.69944 1.08101 1.29971 1.30997 1.25959 0.94379 1.01591 0.91501 0.86493 0.81533 0.80728 0.79247 1.19421 1.19851 1.18051 1.19531 1.05390 0.93762 1.30398 0.89917 1.17612 0.89639 0.91876 0.89825 1.20593 1.07107 0.92275 1.04432 1.20303 0.96261 0.98060 0.93741 1.16994 1.07864 0.84491 1.02407 1.42716 1.11976 1.15775 1.58185 1.19891 0.86819 0.83728 0.81282 1.90730 1.16982 1.79391 1.51625 1.22764 0.89798 0.87549 1.02356 1.86595 1.41806 1.26850 1.68640 1.21114 0.87013 0.81449 0.74830 1.90847 1.21582 1.79465 1.47898 1.19122 0.93734 0.94581 1.06254 1.21149 1.00138 0.90541 0.93640 1.21370 0.92283 1.00864 1.03452 1.18834 0.87669 0.89312 0.94433 1.84747 1.57341 1.38687 1.50175 1.21488 1.00989 0.94346 1.00946 1.21545 0.91030 0.98687 0.94419 1.20163 1.00610 0.91474 0.99641 1.20621 1.02540 0.96650 0.99297 0.90521 0.88651 0.87932 0.76998 0.88256 0.88151 0.83917 0.84334 0.74542 0.84234 0.83224 0.89155 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.05 11.78 55.55 0.65 -18.39 16 2 C 0.09 2.13 4.77 -17.33 -0.08 2.05 16 3 Si 0.90 17.94 29.66 -169.99 -5.04 12.89 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -12.07 8.94 -37.85 -0.34 -12.41 16 8 H 0.08 2.09 8.02 -52.49 -0.42 1.67 16 9 C 0.11 2.99 5.57 -106.80 -0.60 2.39 16 10 C -0.22 -5.64 9.74 -39.26 -0.38 -6.02 16 11 C -0.06 -1.52 8.59 -39.79 -0.34 -1.86 16 12 C -0.03 -0.57 6.25 -83.57 -0.52 -1.09 16 13 N -0.64 -10.93 5.30 -9.74 -0.05 -10.98 16 14 C 0.50 8.49 7.72 -10.99 -0.08 8.41 16 15 O -0.51 -10.91 14.12 -14.10 -0.20 -11.11 16 16 C 0.05 0.68 5.96 36.00 0.21 0.89 16 17 O -0.32 -4.53 9.00 -47.28 -0.43 -4.95 16 18 C 0.51 6.50 7.89 34.49 0.27 6.77 16 19 O -0.51 -7.12 16.13 -19.28 -0.31 -7.43 16 20 C -0.14 -1.43 5.87 -104.98 -0.62 -2.05 16 21 C -0.04 -0.32 9.59 -39.20 -0.38 -0.69 16 22 C -0.16 -1.17 9.97 -39.50 -0.39 -1.57 16 23 C 0.14 1.08 6.71 -39.01 -0.26 0.82 16 24 O -0.50 -3.11 13.49 -18.80 -0.25 -3.37 16 25 C -0.16 -1.29 9.97 -39.50 -0.39 -1.68 16 26 C -0.04 -0.37 9.61 -39.21 -0.38 -0.75 16 27 C -0.10 -2.21 9.90 -39.79 -0.39 -2.60 16 28 C -0.17 -4.30 8.74 -39.26 -0.34 -4.65 16 29 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 30 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 31 H 0.10 2.40 6.45 -52.49 -0.34 2.06 16 32 H 0.40 5.16 8.82 -40.82 -0.36 4.80 16 33 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.14 1.13 7.64 -52.49 -0.40 0.73 16 36 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.40 0.51 9.06 45.56 0.41 0.92 16 38 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.15 1.49 7.60 -52.49 -0.40 1.09 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.11 2.74 6.52 -52.48 -0.34 2.40 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -32.88 367.49 -8.63 -41.51 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.52 Total: 10.33 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -5.02 Total: -14.04 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.60 Total: -29.37 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -1.19 Total: -26.86 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.04 Total: 12.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.88 -8.63 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007745825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.240 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds