Wall clock time and date at job start Tue Mar 31 2020 23:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86794 * 119.99741 * 2 1 4 4 H 1.48503 * 109.47222 * 274.98374 * 3 2 1 5 5 H 1.48506 * 109.47243 * 34.98421 * 3 2 1 6 6 H 1.48492 * 109.47410 * 154.98345 * 3 2 1 7 7 C 1.39904 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99825 * 147.61500 * 7 2 1 9 9 C 1.41153 * 120.00291 * 327.61592 * 7 2 1 10 10 C 1.40861 * 120.16795 * 157.94692 * 9 7 2 11 11 C 1.36372 * 119.83322 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16702 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83121 * 179.97438 * 12 11 10 14 14 C 1.34780 * 120.00150 * 37.76193 * 13 12 11 15 15 O 1.21275 * 119.99851 * 356.69563 * 14 13 12 16 16 C 1.50697 * 119.99866 * 176.69555 * 14 13 12 17 17 O 1.45204 * 109.47211 * 179.97438 * 16 14 13 18 18 C 1.34739 * 117.00165 * 180.02562 * 17 16 14 19 19 O 1.21512 * 120.00099 * 359.97438 * 18 17 16 20 20 C 1.47471 * 119.99882 * 180.02562 * 18 17 16 21 21 C 1.39792 * 120.09061 * 179.97438 * 20 18 17 22 22 C 1.37685 * 119.90436 * 180.02562 * 21 20 18 23 23 C 1.39007 * 120.09230 * 0.02562 * 22 21 20 24 24 O 1.35699 * 119.90689 * 180.02562 * 23 22 21 25 25 C 1.39019 * 120.18858 * 0.27118 * 23 22 21 26 26 C 1.37681 * 120.08858 * 359.45374 * 25 23 22 27 27 C 1.39480 * 120.33062 * 0.25593 * 12 11 10 28 28 C 1.36380 * 120.16857 * 359.48202 * 27 12 11 29 29 H 0.96999 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08008 * 120.08360 * 0.02562 * 10 9 7 31 31 H 1.07995 * 119.91634 * 179.97438 * 11 10 9 32 32 H 0.97001 * 119.99947 * 217.76346 * 13 12 11 33 33 H 1.09010 * 109.47063 * 60.00302 * 16 14 13 34 34 H 1.08994 * 109.47507 * 300.00122 * 16 14 13 35 35 H 1.07997 * 120.05122 * 0.02562 * 21 20 18 36 36 H 1.08003 * 119.94921 * 179.97438 * 22 21 20 37 37 H 0.96698 * 114.00140 * 89.99817 * 24 23 22 38 38 H 1.08001 * 119.95113 * 179.72569 * 25 23 22 39 39 H 1.07997 * 120.04229 * 180.24923 * 26 25 23 40 40 H 1.07996 * 119.91341 * 179.74369 * 27 12 11 41 41 H 1.08004 * 120.08327 * 180.25948 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3849 2.1073 -1.3948 5 1 1.4967 2.6200 0.8028 6 1 3.5889 1.4122 0.5920 7 6 2.0083 -1.2116 0.0005 8 1 2.9623 -1.2845 -0.5004 9 6 1.4673 -2.3387 0.6557 10 6 1.8854 -3.6349 0.2962 11 6 1.3577 -4.7191 0.9334 12 6 0.4060 -4.5469 1.9384 13 7 -0.1285 -5.6588 2.5840 14 6 0.6567 -6.7180 2.8633 15 8 1.8136 -6.7279 2.4995 16 6 0.0972 -7.8900 3.6277 17 8 1.1317 -8.8943 3.7995 18 6 0.7921 -10.0143 4.4671 19 8 -0.3374 -10.1480 4.8945 20 6 1.7917 -11.0775 4.6800 21 6 1.4417 -12.2401 5.3728 22 6 2.3781 -13.2300 5.5698 23 6 3.6702 -13.0743 5.0814 24 8 4.5900 -14.0526 5.2773 25 6 4.0242 -11.9171 4.3972 26 6 3.0923 -10.9248 4.1909 27 6 -0.0173 -3.2669 2.2959 28 6 0.5052 -2.1729 1.6713 29 1 -0.4850 0.8400 -0.0004 30 1 2.6220 -3.7698 -0.4821 31 1 1.6770 -5.7135 0.6585 32 1 -1.0660 -5.6711 2.8326 33 1 -0.7376 -8.3198 3.0740 34 1 -0.2496 -7.5543 4.6050 35 1 0.4382 -12.3617 5.7530 36 1 2.1086 -14.1283 6.1054 37 1 4.6150 -14.7156 4.5739 38 1 5.0304 -11.7982 4.0233 39 1 3.3671 -10.0278 3.6558 40 1 -0.7576 -3.1416 3.0721 41 1 0.1796 -1.1821 1.9521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007745825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:47 Heat of formation + Delta-G solvation = -130.185756 kcal Electronic energy + Delta-G solvation = -26938.496902 eV Core-core repulsion = 22747.813434 eV Total energy + Delta-G solvation = -4190.683468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.114 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.91832 -41.11217 -40.39037 -39.07524 -37.82750 -37.35098 -36.20882 -34.86350 -32.24733 -31.80853 -31.47992 -31.13490 -29.51557 -26.65362 -25.07131 -23.86808 -23.50438 -22.66515 -22.06082 -21.40421 -19.52328 -19.39550 -19.21238 -18.84299 -17.84100 -17.80099 -17.59659 -17.01655 -16.46331 -16.43925 -16.19031 -15.82765 -15.70053 -15.20443 -15.05630 -14.58384 -14.48601 -14.25111 -14.04452 -13.97083 -13.82096 -13.57400 -13.33459 -13.16000 -13.05542 -12.85012 -12.69672 -12.34269 -11.95619 -11.93400 -11.84374 -11.60856 -11.51094 -11.18332 -10.82204 -10.51297 -10.16980 -9.86379 -9.49437 -9.04631 -8.75109 -6.25139 -0.52411 0.24899 0.76932 1.12628 1.15539 1.30584 1.35896 1.41059 1.53549 1.69535 2.19356 2.40460 2.56980 2.62742 3.13714 3.53149 3.60364 3.70720 3.80283 3.88200 4.01956 4.03930 4.20847 4.33849 4.38490 4.47253 4.66372 4.88724 4.91952 4.96762 5.08963 5.13157 5.17258 5.22119 5.25044 5.28256 5.40653 5.62437 5.62658 5.84255 5.99715 6.06360 6.33479 6.48151 6.59711 6.65528 6.77474 6.87683 6.96345 7.29550 8.18922 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.026337 B = 0.001740 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.875987 B =16087.540270 C =16919.455763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.053 3.947 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.245 4.245 11 C -0.075 4.075 12 C -0.012 4.012 13 N -0.633 5.633 14 C 0.501 3.499 15 O -0.558 6.558 16 C 0.060 3.940 17 O -0.342 6.342 18 C 0.514 3.486 19 O -0.525 6.525 20 C -0.159 4.159 21 C -0.036 4.036 22 C -0.157 4.157 23 C 0.153 3.847 24 O -0.504 6.504 25 C -0.164 4.164 26 C -0.046 4.046 27 C -0.096 4.096 28 C -0.190 4.190 29 H 0.295 0.705 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.420 0.580 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.420 0.580 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.224 -22.540 10.105 24.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.167 4.167 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.531 4.531 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.265 4.265 11 C -0.095 4.095 12 C -0.104 4.104 13 N -0.280 5.280 14 C 0.288 3.712 15 O -0.436 6.436 16 C -0.016 4.016 17 O -0.257 6.257 18 C 0.360 3.640 19 O -0.416 6.416 20 C -0.160 4.160 21 C -0.054 4.054 22 C -0.175 4.175 23 C 0.107 3.893 24 O -0.320 6.320 25 C -0.182 4.182 26 C -0.065 4.065 27 C -0.116 4.116 28 C -0.210 4.210 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.258 0.742 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.282 0.718 38 H 0.170 0.830 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.585 -22.161 10.456 24.511 hybrid contribution -0.296 0.761 -0.671 1.057 sum 0.289 -21.400 9.785 23.533 Atomic orbital electron populations 1.69936 1.09342 1.31538 1.31116 1.26722 0.95091 1.04421 0.90506 0.85372 0.79639 0.76172 0.79685 1.18407 1.18445 1.18595 1.19726 1.05774 0.95320 1.32251 0.90659 1.17932 0.90728 0.92402 0.90843 1.20719 1.07902 0.92734 1.05174 1.20423 0.97035 0.97545 0.94509 1.17048 1.06265 0.86004 1.01120 1.42581 1.13286 1.14518 1.57613 1.20597 0.86090 0.84247 0.80306 1.90719 1.19186 1.80337 1.53365 1.22746 0.89648 0.85986 1.03265 1.86590 1.42517 1.27505 1.69136 1.21439 0.87250 0.81189 0.74081 1.90825 1.22257 1.79731 1.48796 1.19167 0.93672 0.94937 1.08209 1.21277 1.00838 0.90107 0.93149 1.21615 0.91778 1.01188 1.02936 1.18896 0.87883 0.89309 0.93174 1.84693 1.56847 1.38966 1.51451 1.21640 1.01296 0.94233 1.01069 1.21485 0.91266 0.98900 0.94820 1.20450 1.00656 0.90780 0.99723 1.20655 1.03222 0.97234 0.99847 0.89404 0.88956 0.87972 0.74227 0.85461 0.85561 0.83274 0.81865 0.71823 0.82954 0.84383 0.85583 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.00 11.78 21.82 0.26 -39.74 16 2 C 0.05 2.59 4.77 85.24 0.41 3.00 16 3 Si 0.97 37.06 29.66 68.60 2.03 39.10 16 4 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.50 -27.30 8.94 23.39 0.21 -27.09 16 8 H 0.08 4.01 8.02 -2.91 -0.02 3.99 16 9 C 0.08 4.59 5.57 -21.28 -0.12 4.47 16 10 C -0.25 -12.90 9.74 22.48 0.22 -12.68 16 11 C -0.08 -3.65 8.59 22.14 0.19 -3.46 16 12 C -0.01 -0.50 6.25 38.57 0.24 -0.26 16 13 N -0.63 -20.40 5.30 -303.11 -1.61 -22.01 16 14 C 0.50 16.47 7.72 87.66 0.68 17.14 16 15 O -0.56 -23.91 14.12 15.78 0.22 -23.69 16 16 C 0.06 1.42 5.96 71.24 0.42 1.85 16 17 O -0.34 -9.31 9.00 -50.11 -0.45 -9.76 16 18 C 0.51 12.66 7.89 70.26 0.55 13.21 16 19 O -0.53 -13.99 16.13 19.80 0.32 -13.67 16 20 C -0.16 -3.25 5.87 -20.09 -0.12 -3.37 16 21 C -0.04 -0.56 9.59 22.51 0.22 -0.35 16 22 C -0.16 -1.90 9.97 22.32 0.22 -1.67 16 23 C 0.15 1.96 6.71 22.64 0.15 2.11 16 24 O -0.50 -4.86 13.49 -90.19 -1.22 -6.08 16 25 C -0.16 -2.45 9.97 22.33 0.22 -2.22 16 26 C -0.05 -0.88 9.61 22.51 0.22 -0.67 16 27 C -0.10 -4.23 9.90 22.14 0.22 -4.01 16 28 C -0.19 -9.70 8.74 22.48 0.20 -9.50 16 29 H 0.30 13.12 8.30 -92.71 -0.77 12.35 16 30 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 31 H 0.10 4.91 6.45 -2.91 -0.02 4.89 16 32 H 0.42 9.66 8.82 -92.71 -0.82 8.85 16 33 H 0.13 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.15 2.12 7.64 -2.91 -0.02 2.10 16 36 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.42 -0.22 9.06 -74.06 -0.67 -0.89 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 39 H 0.14 2.88 7.60 -2.91 -0.02 2.86 16 40 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 41 H 0.10 5.15 6.52 -2.91 -0.02 5.13 16 Total: -1.00 -73.36 367.49 3.31 -70.04 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -0.38 Total: 29.30 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.13 Total: -23.50 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -1.35 Total: -61.75 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -1.12 Total: -53.20 kcal Atomic # 14 Polarization: 37.06 SS G_CDS: 2.03 Total: 39.10 kcal Total: -73.36 3.31 -70.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007745825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.141 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds