Wall clock time and date at job start Wed Apr 1 2020 00:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37971 * 119.92564 * 2 1 4 4 C 1.39609 * 119.84736 * 179.97438 * 3 2 1 5 5 C 1.47725 * 120.14645 * 179.97438 * 4 3 2 6 6 O 1.21481 * 119.99798 * 180.02562 * 5 4 3 7 7 O 1.34708 * 120.00275 * 0.02562 * 5 4 3 8 8 C 1.39647 * 119.70188 * 359.77725 * 4 3 2 9 9 C 1.37920 * 119.84768 * 0.47278 * 8 4 3 10 10 S 1.76195 * 119.92814 * 179.77533 * 9 8 4 11 11 O 1.42103 * 106.40423 * 132.26485 * 10 9 8 12 12 O 1.42105 * 106.40216 * 359.34651 * 10 9 8 13 13 N 1.65596 * 107.22147 * 245.80933 * 10 9 8 14 14 C 1.46503 * 120.00127 * 65.55576 * 13 10 9 15 15 C 1.53006 * 109.46794 * 163.15754 * 14 13 10 16 16 C 1.52999 * 109.46743 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99340 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00110 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00099 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46825 * 90.00058 * 21 19 17 23 23 H 1.48490 * 109.47516 * 209.99891 * 21 19 17 24 24 H 1.48500 * 109.47123 * 330.00702 * 21 19 17 25 25 C 1.38347 * 119.92640 * 179.97438 * 2 1 3 26 26 C 1.50699 * 119.84519 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47172 * 270.02163 * 1 2 3 28 28 H 1.09001 * 109.46962 * 30.02418 * 1 2 3 29 29 H 1.08993 * 109.46883 * 150.02117 * 1 2 3 30 30 H 1.08001 * 120.07411 * 359.97438 * 3 2 1 31 31 H 0.96704 * 117.00234 * 179.97438 * 7 5 4 32 32 H 1.07997 * 120.07803 * 180.25478 * 8 4 3 33 33 H 0.96999 * 119.99841 * 245.56630 * 13 10 9 34 34 H 1.08993 * 109.47531 * 283.15848 * 14 13 10 35 35 H 1.08995 * 109.46823 * 43.16515 * 14 13 10 36 36 H 1.09007 * 109.47164 * 300.00180 * 15 14 13 37 37 H 1.08994 * 109.47319 * 60.00603 * 15 14 13 38 38 H 1.09007 * 109.47063 * 299.99783 * 16 15 14 39 39 H 1.09002 * 109.47422 * 59.99910 * 16 15 14 40 40 H 0.97010 * 119.99734 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.47451 * 275.39421 * 26 25 2 42 42 H 1.08995 * 109.47484 * 35.40106 * 26 25 2 43 43 H 1.09007 * 109.46792 * 155.39999 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1939 0.0005 5 6 4.3350 2.4703 0.0000 6 8 5.5498 2.4655 0.0000 7 8 3.6661 3.6396 -0.0005 8 6 4.2816 -0.0201 0.0058 9 6 3.5811 -1.2081 0.0005 10 16 4.4499 -2.7410 0.0012 11 8 3.8460 -3.5441 1.0059 12 8 5.8337 -2.4179 -0.0080 13 7 4.1338 -3.4842 -1.4444 14 6 4.6104 -2.8875 -2.6946 15 6 4.5692 -3.9358 -3.8084 16 6 5.0675 -3.3127 -5.1138 17 6 5.0263 -4.3451 -6.2110 18 1 4.6798 -5.3455 -5.9982 19 6 5.4310 -4.0122 -7.4863 20 7 5.8536 -2.7940 -7.7452 21 14 5.3806 -5.2920 -8.8461 22 1 4.0587 -5.2453 -9.5210 23 1 6.4513 -5.0065 -9.8345 24 1 5.5915 -6.6417 -8.2637 25 6 2.1972 -1.1990 0.0005 26 6 1.4385 -2.5011 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6553 2.1311 -0.0004 31 1 4.1960 4.4485 -0.0005 32 1 5.3616 -0.0286 0.0104 33 1 3.6329 -4.3147 -1.4635 34 1 3.9707 -2.0468 -2.9631 35 1 5.6342 -2.5375 -2.5629 36 1 5.2090 -4.7765 -3.5399 37 1 3.5454 -4.2858 -3.9401 38 1 4.4280 -2.4718 -5.3825 39 1 6.0914 -2.9629 -4.9819 40 1 6.1387 -2.5600 -8.6424 41 1 1.1717 -2.7662 1.0235 42 1 0.5320 -2.3935 -0.5951 43 1 2.0631 -3.2855 -0.4269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079865849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:15 Heat of formation + Delta-G solvation = -157.507721 kcal Electronic energy + Delta-G solvation = -27467.812535 eV Core-core repulsion = 23411.388249 eV Total energy + Delta-G solvation = -4056.424286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.84862 -39.52182 -37.35957 -36.42535 -36.09745 -35.89503 -33.93231 -33.29394 -32.91862 -30.90661 -28.63707 -27.23575 -26.41922 -23.92224 -23.41214 -23.04036 -20.71242 -20.62283 -19.42507 -18.55864 -17.90297 -17.35908 -16.80345 -16.30485 -16.27998 -15.96166 -15.75389 -15.43991 -14.81616 -14.55001 -14.52048 -14.38783 -13.98834 -13.60779 -13.21804 -13.12582 -12.68219 -12.60668 -12.47644 -12.38342 -12.34755 -12.19644 -12.06205 -11.97347 -11.85249 -11.73083 -11.55430 -11.09489 -10.95198 -10.83343 -10.77401 -10.56184 -9.95674 -9.73918 -9.48906 -9.31078 -9.14378 -9.11489 -8.38368 -6.03210 -4.06082 0.10577 0.33828 0.59996 2.04725 2.61463 2.91020 3.16564 3.30015 3.36834 3.39927 3.65853 4.10359 4.24459 4.38201 4.43480 4.50324 4.53297 4.73840 4.98717 5.11024 5.13201 5.19425 5.26556 5.28508 5.32885 5.34379 5.55086 5.59731 5.63363 5.69391 5.78412 5.87750 5.93437 6.05863 6.12073 6.29717 6.54073 6.73036 6.91556 7.08541 7.54321 7.61545 7.74025 7.95409 8.36834 9.00527 9.58313 11.08035 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.002974 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.484547 B = 9412.473181 C =10208.873124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.123 4.123 3 C -0.007 4.007 4 C -0.152 4.152 5 C 0.529 3.471 6 O -0.505 6.505 7 O -0.513 6.513 8 C 0.044 3.956 9 C -0.686 4.686 10 S 2.696 3.304 11 O -0.959 6.959 12 O -0.952 6.952 13 N -1.112 6.112 14 C 0.112 3.888 15 C -0.115 4.115 16 C 0.021 3.979 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.056 3.944 26 C -0.148 4.148 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.417 0.583 32 H 0.160 0.840 33 H 0.418 0.582 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.261 0.739 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.458 9.040 18.937 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C -0.025 4.025 4 C -0.154 4.154 5 C 0.373 3.627 6 O -0.393 6.393 7 O -0.326 6.326 8 C 0.025 3.975 9 C -0.771 4.771 10 S 2.784 3.216 11 O -0.950 6.950 12 O -0.942 6.942 13 N -0.874 5.874 14 C -0.013 4.013 15 C -0.154 4.154 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.055 3.945 26 C -0.204 4.204 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.164 0.836 31 H 0.276 0.724 32 H 0.177 0.823 33 H 0.253 0.747 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.661 8.673 19.468 24.295 hybrid contribution -0.245 0.320 -1.218 1.283 sum -11.906 8.993 18.250 23.573 Atomic orbital electron populations 1.20884 0.89674 1.03800 1.02970 1.19865 0.97063 0.92022 1.03394 1.21604 0.92619 0.98747 0.89533 1.19032 0.93739 0.90509 1.12118 1.20708 0.85576 0.84104 0.72361 1.90946 1.14789 1.87955 1.45627 1.84516 1.45151 1.16922 1.85965 1.21064 1.01349 0.89215 0.85900 1.30989 1.05498 1.20768 1.19837 1.01941 0.73773 0.73236 0.72690 1.93601 1.78339 1.66964 1.56047 1.93601 1.29939 1.84512 1.86153 1.55545 1.72338 1.36639 1.22857 1.21642 0.99460 0.97374 0.82853 1.21850 1.01301 0.97080 0.95161 1.19086 0.96733 0.96247 0.89660 1.21202 1.43504 0.97403 0.93913 0.92599 1.25021 0.95266 0.95342 0.98804 1.69964 1.43845 1.18486 1.21024 0.86585 0.77654 0.81864 0.81827 1.20710 1.21218 1.19861 1.19698 0.91293 0.96188 0.87359 1.21393 1.01409 0.92746 1.04877 0.90581 0.90933 0.90427 0.83622 0.72414 0.82264 0.74677 0.92092 0.90269 0.92276 0.92558 0.96343 0.96116 0.92941 0.88036 0.88990 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.60 36.00 0.35 -0.33 16 2 C -0.12 -1.10 5.87 -104.68 -0.61 -1.72 16 3 C -0.01 -0.06 9.27 -39.17 -0.36 -0.43 16 4 C -0.15 -1.75 5.87 -104.98 -0.62 -2.37 16 5 C 0.53 6.03 8.27 34.61 0.29 6.32 16 6 O -0.50 -7.37 17.14 -19.25 -0.33 -7.70 16 7 O -0.51 -3.90 12.68 -40.51 -0.51 -4.41 16 8 C 0.04 0.57 9.09 -39.17 -0.36 0.22 16 9 C -0.69 -8.50 5.89 -39.64 -0.23 -8.73 16 10 S 2.70 36.64 4.93 -107.50 -0.53 36.11 16 11 O -0.96 -13.79 16.24 -57.17 -0.93 -14.72 16 12 O -0.95 -15.99 16.39 -57.17 -0.94 -16.93 16 13 N -1.11 -14.25 5.00 -10.61 -0.05 -14.30 16 14 C 0.11 1.75 6.24 -4.04 -0.03 1.72 16 15 C -0.11 -2.15 5.30 -26.73 -0.14 -2.29 16 16 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 17 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 21 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.06 0.58 5.88 -104.52 -0.61 -0.03 16 26 C -0.15 -1.26 8.36 36.01 0.30 -0.95 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.08 0.40 6.01 -51.93 -0.31 0.08 16 30 H 0.15 0.98 7.61 -52.49 -0.40 0.59 16 31 H 0.42 1.35 9.11 45.56 0.42 1.76 16 32 H 0.16 2.18 6.92 -52.49 -0.36 1.81 16 33 H 0.42 4.43 8.25 -34.46 -0.28 4.14 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.57 6.16 -51.93 -0.32 0.25 16 43 H 0.07 0.64 4.78 -51.93 -0.25 0.39 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -36.30 373.38 -9.36 -45.67 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.83 Total: 1.49 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.58 Total: -21.37 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.68 Total: -40.03 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -2.71 Total: -43.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 36.64 SS G_CDS: -0.53 Total: 36.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.30 -9.36 -45.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079865849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.839 kcal (2) G-P(sol) polarization free energy of solvation -36.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds