Wall clock time and date at job start Wed Apr 1 2020 00:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37971 * 119.92564 * 2 1 4 4 C 1.39609 * 119.84736 * 179.97438 * 3 2 1 5 5 C 1.47725 * 120.14645 * 179.97438 * 4 3 2 6 6 O 1.21481 * 119.99798 * 180.02562 * 5 4 3 7 7 O 1.34708 * 120.00275 * 0.02562 * 5 4 3 8 8 C 1.39647 * 119.70188 * 359.77725 * 4 3 2 9 9 C 1.37920 * 119.84768 * 0.47278 * 8 4 3 10 10 S 1.76195 * 119.92814 * 179.77533 * 9 8 4 11 11 O 1.42103 * 106.40423 * 132.26485 * 10 9 8 12 12 O 1.42105 * 106.40216 * 359.34651 * 10 9 8 13 13 N 1.65596 * 107.22147 * 245.80933 * 10 9 8 14 14 C 1.46503 * 120.00127 * 65.55576 * 13 10 9 15 15 C 1.53006 * 109.46794 * 163.15754 * 14 13 10 16 16 C 1.52999 * 109.46743 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99340 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00110 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99966 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00099 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46825 * 90.00058 * 21 19 17 23 23 H 1.48490 * 109.47516 * 209.99891 * 21 19 17 24 24 H 1.48500 * 109.47123 * 330.00702 * 21 19 17 25 25 C 1.38347 * 119.92640 * 179.97438 * 2 1 3 26 26 C 1.50699 * 119.84519 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47172 * 270.02163 * 1 2 3 28 28 H 1.09001 * 109.46962 * 30.02418 * 1 2 3 29 29 H 1.08993 * 109.46883 * 150.02117 * 1 2 3 30 30 H 1.08001 * 120.07411 * 359.97438 * 3 2 1 31 31 H 0.96704 * 117.00234 * 179.97438 * 7 5 4 32 32 H 1.07997 * 120.07803 * 180.25478 * 8 4 3 33 33 H 0.96999 * 119.99841 * 245.56630 * 13 10 9 34 34 H 1.08993 * 109.47531 * 283.15848 * 14 13 10 35 35 H 1.08995 * 109.46823 * 43.16515 * 14 13 10 36 36 H 1.09007 * 109.47164 * 300.00180 * 15 14 13 37 37 H 1.08994 * 109.47319 * 60.00603 * 15 14 13 38 38 H 1.09007 * 109.47063 * 299.99783 * 16 15 14 39 39 H 1.09002 * 109.47422 * 59.99910 * 16 15 14 40 40 H 0.97010 * 119.99734 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.47451 * 275.39421 * 26 25 2 42 42 H 1.08995 * 109.47484 * 35.40106 * 26 25 2 43 43 H 1.09007 * 109.46792 * 155.39999 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1958 0.0000 4 6 3.5914 1.1939 0.0005 5 6 4.3350 2.4703 0.0000 6 8 5.5498 2.4655 0.0000 7 8 3.6661 3.6396 -0.0005 8 6 4.2816 -0.0201 0.0058 9 6 3.5811 -1.2081 0.0005 10 16 4.4499 -2.7410 0.0012 11 8 3.8460 -3.5441 1.0059 12 8 5.8337 -2.4179 -0.0080 13 7 4.1338 -3.4842 -1.4444 14 6 4.6104 -2.8875 -2.6946 15 6 4.5692 -3.9358 -3.8084 16 6 5.0675 -3.3127 -5.1138 17 6 5.0263 -4.3451 -6.2110 18 1 4.6798 -5.3455 -5.9982 19 6 5.4310 -4.0122 -7.4863 20 7 5.8536 -2.7940 -7.7452 21 14 5.3806 -5.2920 -8.8461 22 1 4.0587 -5.2453 -9.5210 23 1 6.4513 -5.0065 -9.8345 24 1 5.5915 -6.6417 -8.2637 25 6 2.1972 -1.1990 0.0005 26 6 1.4385 -2.5011 0.0005 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6553 2.1311 -0.0004 31 1 4.1960 4.4485 -0.0005 32 1 5.3616 -0.0286 0.0104 33 1 3.6329 -4.3147 -1.4635 34 1 3.9707 -2.0468 -2.9631 35 1 5.6342 -2.5375 -2.5629 36 1 5.2090 -4.7765 -3.5399 37 1 3.5454 -4.2858 -3.9401 38 1 4.4280 -2.4718 -5.3825 39 1 6.0914 -2.9629 -4.9819 40 1 6.1387 -2.5600 -8.6424 41 1 1.1717 -2.7662 1.0235 42 1 0.5320 -2.3935 -0.5951 43 1 2.0631 -3.2855 -0.4269 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079865849.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:15 Heat of formation + Delta-G solvation = -183.995515 kcal Electronic energy + Delta-G solvation = -27468.961132 eV Core-core repulsion = 23411.388249 eV Total energy + Delta-G solvation = -4057.572883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68002 -40.32227 -38.52986 -37.47554 -37.22777 -37.08582 -35.22131 -34.66187 -33.71006 -32.65612 -29.36902 -28.20952 -27.85801 -24.81100 -24.74161 -24.21224 -22.25299 -21.48475 -20.52723 -19.45681 -18.83985 -18.58952 -18.38863 -17.55928 -17.23564 -16.82704 -16.60566 -16.55682 -16.38248 -16.07713 -15.65259 -15.33917 -14.73283 -14.39487 -14.31479 -14.09267 -13.90367 -13.72033 -13.63384 -13.48479 -13.31953 -13.23842 -13.23013 -13.13212 -12.96455 -12.78246 -12.68188 -12.52984 -12.43200 -12.29698 -11.97576 -11.79421 -11.63987 -11.39414 -11.15215 -10.56380 -10.52766 -10.48803 -9.89935 -8.17510 -6.28049 -0.81315 -0.63458 -0.28419 1.21565 1.42581 1.43901 1.54696 1.84663 1.86866 2.28950 2.43470 2.60437 3.16574 3.22468 3.51565 3.52520 3.74642 3.81086 3.94409 4.04321 4.25299 4.31007 4.37722 4.43832 4.48741 4.59536 4.64398 4.65910 4.82457 4.88908 4.96187 4.97987 5.05628 5.18861 5.20162 5.23112 5.28602 5.44022 5.55779 5.61661 5.76461 5.88139 6.04558 6.26566 6.83395 6.89414 7.41296 8.94290 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.002974 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.484547 B = 9412.473181 C =10208.873124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.002 3.998 4 C -0.167 4.167 5 C 0.534 3.466 6 O -0.548 6.548 7 O -0.496 6.496 8 C 0.019 3.981 9 C -0.694 4.694 10 S 2.711 3.289 11 O -0.967 6.967 12 O -0.992 6.992 13 N -1.101 6.101 14 C 0.122 3.878 15 C -0.102 4.102 16 C 0.020 3.980 17 C -0.540 4.540 18 H 0.064 0.936 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.263 1.263 25 C 0.050 3.950 26 C -0.155 4.155 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.176 0.824 31 H 0.437 0.563 32 H 0.138 0.862 33 H 0.430 0.570 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.000 1.000 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.658 8.717 19.154 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C -0.016 4.016 4 C -0.169 4.169 5 C 0.380 3.620 6 O -0.440 6.440 7 O -0.311 6.311 8 C 0.000 4.000 9 C -0.782 4.782 10 S 2.801 3.199 11 O -0.957 6.957 12 O -0.982 6.982 13 N -0.865 5.865 14 C -0.004 4.004 15 C -0.141 4.141 16 C -0.018 4.018 17 C -0.578 4.578 18 H 0.082 0.918 19 C -0.199 4.199 20 N -0.574 5.574 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.187 1.187 25 C 0.048 3.952 26 C -0.211 4.211 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.193 0.807 31 H 0.299 0.701 32 H 0.156 0.844 33 H 0.268 0.732 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.019 0.981 39 H 0.010 0.990 40 H 0.071 0.929 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.877 8.324 19.703 26.054 hybrid contribution 0.666 0.524 -1.234 1.497 sum -14.210 8.847 18.469 24.926 Atomic orbital electron populations 1.21018 0.86830 1.05131 1.04388 1.20298 0.98954 0.91115 1.01481 1.21961 0.91476 1.00307 0.87821 1.19158 0.94975 0.89969 1.12808 1.20751 0.84955 0.85021 0.71287 1.90930 1.16603 1.88609 1.47875 1.84463 1.44796 1.16821 1.84980 1.20994 1.00715 0.90510 0.87803 1.30634 1.06514 1.19221 1.21823 1.01202 0.72917 0.73359 0.72379 1.93582 1.78247 1.67659 1.56174 1.93553 1.32823 1.85184 1.86626 1.55241 1.72381 1.37358 1.21488 1.21339 0.99250 0.96850 0.82966 1.21615 1.01981 0.97357 0.93178 1.19007 0.94924 0.95567 0.92315 1.21695 1.43025 0.98246 0.94854 0.91765 1.25964 0.94888 0.97417 1.01634 1.70103 1.45009 1.20631 1.21682 0.85470 0.77891 0.79352 0.78464 1.19638 1.21196 1.18740 1.20051 0.90466 0.97968 0.86681 1.21566 1.02150 0.91367 1.06046 0.88946 0.89423 0.89358 0.80678 0.70076 0.84380 0.73215 0.90954 0.91746 0.92149 0.90694 0.98149 0.99025 0.92882 0.86980 0.86230 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.60 71.23 0.68 -0.17 16 2 C -0.12 -1.77 5.87 -19.90 -0.12 -1.88 16 3 C 0.00 0.04 9.27 22.54 0.21 0.25 16 4 C -0.17 -3.80 5.87 -20.10 -0.12 -3.92 16 5 C 0.53 12.17 8.27 70.33 0.58 12.75 16 6 O -0.55 -16.79 17.14 19.90 0.34 -16.45 16 7 O -0.50 -6.69 12.68 -56.18 -0.71 -7.41 16 8 C 0.02 0.53 9.09 22.53 0.20 0.73 16 9 C -0.69 -17.23 5.89 22.23 0.13 -17.09 16 10 S 2.71 74.92 4.93 -56.49 -0.28 74.65 16 11 O -0.97 -27.43 16.24 -128.00 -2.08 -29.51 16 12 O -0.99 -35.23 16.39 -128.00 -2.10 -37.32 16 13 N -1.10 -27.77 5.00 -187.49 -0.94 -28.71 16 14 C 0.12 3.85 6.24 86.38 0.54 4.38 16 15 C -0.10 -3.80 5.30 30.60 0.16 -3.64 16 16 C 0.02 1.00 4.97 29.85 0.15 1.15 16 17 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 18 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.93 -56.34 13.29 21.44 0.28 -56.05 16 21 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 C 0.05 0.95 5.88 -19.80 -0.12 0.83 16 26 C -0.16 -2.22 8.36 71.24 0.60 -1.62 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.09 0.42 8.08 -2.39 -0.02 0.41 16 29 H 0.09 0.49 6.01 -2.39 -0.01 0.48 16 30 H 0.18 1.70 7.61 -2.91 -0.02 1.68 16 31 H 0.44 2.08 9.11 -74.05 -0.67 1.40 16 32 H 0.14 4.22 6.92 -2.91 -0.02 4.20 16 33 H 0.43 8.56 8.25 -96.75 -0.80 7.76 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 35 H 0.06 2.23 7.70 -2.39 -0.02 2.21 16 36 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 39 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 40 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.12 1.02 6.16 -2.39 -0.01 1.00 16 43 H 0.06 1.02 4.78 -2.38 -0.01 1.01 16 Total: -1.00 -80.47 373.38 -0.26 -80.73 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -0.40 Total: 11.92 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 3.60 Total: -37.40 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -0.65 Total: -84.76 kcal Atomic # 8 Polarization: -86.14 SS G_CDS: -4.55 Total: -90.69 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 74.92 SS G_CDS: -0.28 Total: 74.65 kcal Total: -80.47 -0.26 -80.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079865849.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.267 kcal (2) G-P(sol) polarization free energy of solvation -80.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds