Wall clock time and date at job start Tue Mar 31 2020 23:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46831 * 172.18271 * 3 2 1 5 5 C 1.37099 * 119.99730 * 274.43406 * 4 3 2 6 6 H 1.07995 * 120.00005 * 186.58433 * 5 4 3 7 7 C 1.38947 * 120.00493 * 6.58402 * 5 4 3 8 8 N 1.31419 * 119.99974 * 18.28307 * 7 5 4 9 9 Si 1.86801 * 120.00401 * 198.28400 * 7 5 4 10 10 H 1.48501 * 109.46891 * 89.99768 * 9 7 5 11 11 H 1.48494 * 109.47346 * 209.99781 * 9 7 5 12 12 H 1.48499 * 109.46936 * 329.99994 * 9 7 5 13 13 C 1.34774 * 119.99828 * 94.43478 * 4 3 2 14 14 O 1.21295 * 119.99696 * 175.59293 * 13 4 3 15 15 C 1.50692 * 119.99950 * 355.86679 * 13 4 3 16 16 H 1.09001 * 109.47558 * 43.50501 * 15 13 4 17 17 C 1.52995 * 109.47310 * 283.50436 * 15 13 4 18 18 O 1.42910 * 109.46933 * 163.50739 * 15 13 4 19 19 C 1.35900 * 116.99621 * 203.24819 * 18 15 13 20 20 C 1.38750 * 120.05874 * 354.82713 * 19 18 15 21 21 C 1.38125 * 119.94388 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.05422 * 0.02562 * 21 20 19 23 23 C 1.38240 * 120.11557 * 0.02562 * 22 21 20 24 24 C 1.38171 * 120.05186 * 359.67436 * 23 22 21 25 25 C 1.50702 * 120.02677 * 180.29589 * 24 23 22 26 26 F 1.39900 * 109.47048 * 0.32612 * 25 24 23 27 27 F 1.39901 * 109.46676 * 120.32746 * 25 24 23 28 28 F 1.39902 * 109.47243 * 240.32254 * 25 24 23 29 29 H 4.40641 * 5.51474 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47309 * 52.18723 * 3 2 1 31 31 H 1.08989 * 109.47196 * 292.18106 * 3 2 1 32 32 H 0.96993 * 120.00217 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47560 * 65.25528 * 17 15 13 34 34 H 1.09000 * 109.47779 * 185.25798 * 17 15 13 35 35 H 1.09002 * 109.47063 * 305.25426 * 17 15 13 36 36 H 1.07996 * 120.02755 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.97233 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.94108 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.97615 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3694 -0.1879 5 6 3.2753 1.8790 -1.4527 6 1 3.7336 2.8461 -1.5970 7 6 2.8293 1.1511 -2.5491 8 7 1.9689 0.1719 -2.3818 9 14 3.4526 1.5644 -4.2609 10 1 4.6760 0.7727 -4.5466 11 1 2.4056 1.2362 -5.2615 12 1 3.7716 3.0128 -4.3351 13 6 3.4430 2.1274 0.8827 14 8 3.9219 3.2308 0.7265 15 6 3.1997 1.6016 2.2738 16 1 3.5245 0.5627 2.3316 17 6 1.7069 1.6879 2.5978 18 8 3.9373 2.3845 3.2147 19 6 4.2350 1.7998 4.4048 20 6 3.7352 0.5407 4.7048 21 6 4.0388 -0.0512 5.9154 22 6 4.8398 0.6103 6.8281 23 6 5.3382 1.8653 6.5321 24 6 5.0425 2.4590 5.3200 25 6 5.5916 3.8243 4.9951 26 9 6.3715 4.2796 6.0636 27 9 6.3799 3.7475 3.8418 28 9 4.5332 4.7131 4.7781 29 1 -1.0502 -0.0004 -0.0001 30 1 3.0096 -0.6292 -0.8119 31 1 3.0095 -0.3871 0.9515 32 1 1.6573 -0.3359 -3.1471 33 1 1.1529 1.0184 1.9398 34 1 1.5427 1.3959 3.6350 35 1 1.3615 2.7111 2.4495 36 1 3.1085 0.0242 3.9928 37 1 3.6496 -1.0311 6.1496 38 1 5.0757 0.1460 7.7743 39 1 5.9632 2.3800 7.2467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491014820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:34 Heat of formation + Delta-G solvation = -111.215255 kcal Electronic energy + Delta-G solvation = -30439.722274 eV Core-core repulsion = 25708.004688 eV Total energy + Delta-G solvation = -4731.717586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.86363 -47.44196 -47.23840 -40.56988 -38.90009 -37.32133 -35.28157 -32.78716 -32.09901 -31.42773 -30.89518 -29.99368 -26.69676 -25.88385 -25.21497 -23.98126 -22.35622 -21.97549 -19.38229 -18.87556 -18.18426 -18.16325 -18.07494 -17.29716 -16.64689 -16.37795 -15.77441 -15.32686 -15.23579 -14.84510 -14.38360 -14.27728 -14.23153 -14.10636 -13.96145 -13.74414 -13.46232 -13.44335 -13.31097 -13.14388 -12.72066 -12.67590 -12.47061 -12.15581 -12.00589 -11.66096 -11.62980 -11.51479 -11.07986 -10.95480 -10.80680 -10.54493 -10.36116 -9.46487 -9.42812 -9.37818 -8.91223 -8.57134 -8.31593 -8.07819 -6.41669 -3.94641 0.82674 1.18741 2.83851 2.97618 3.08851 3.21253 3.27697 3.37585 3.53251 3.79175 3.92583 3.95293 4.11682 4.19653 4.61737 4.67938 4.73645 4.80582 4.86421 4.93138 5.08709 5.12893 5.25799 5.31909 5.36639 5.54475 5.57835 5.85092 5.90454 5.99706 6.03346 6.11178 6.19908 6.42020 6.48289 6.74657 6.95884 7.26664 7.46290 7.86496 8.30092 8.72810 9.00147 9.20115 9.71947 10.54637 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.003637 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.465456 B = 7697.583867 C = 8784.689432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.100 4.100 3 C 0.225 3.775 4 N -0.433 5.433 5 C -0.308 4.308 6 H 0.110 0.890 7 C 0.030 3.970 8 N -0.868 5.868 9 Si 0.929 3.071 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.450 3.550 14 O -0.558 6.558 15 C 0.073 3.927 16 H 0.086 0.914 17 C -0.181 4.181 18 O -0.273 6.273 19 C 0.190 3.810 20 C -0.218 4.218 21 C -0.046 4.046 22 C -0.170 4.170 23 C -0.036 4.036 24 C -0.225 4.225 25 C 0.517 3.483 26 F -0.186 7.186 27 F -0.168 7.168 28 F -0.172 7.172 29 H 0.199 0.801 30 H 0.123 0.877 31 H 0.056 0.944 32 H 0.270 0.730 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.050 -4.726 16.314 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.102 4.102 3 C 0.102 3.898 4 N -0.153 5.153 5 C -0.434 4.434 6 H 0.128 0.872 7 C -0.173 4.173 8 N -0.507 5.507 9 Si 0.756 3.244 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.237 3.763 14 O -0.439 6.439 15 C 0.014 3.986 16 H 0.103 0.897 17 C -0.238 4.238 18 O -0.184 6.184 19 C 0.142 3.858 20 C -0.236 4.236 21 C -0.064 4.064 22 C -0.188 4.188 23 C -0.054 4.054 24 C -0.227 4.227 25 C 0.462 3.538 26 F -0.167 7.167 27 F -0.149 7.149 28 F -0.153 7.153 29 H 0.216 0.784 30 H 0.140 0.860 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.285 -4.043 15.962 16.624 hybrid contribution -0.245 0.016 -1.034 1.063 sum 2.041 -4.026 14.928 15.595 Atomic orbital electron populations 1.24252 0.95342 1.01771 1.07091 1.22909 0.94083 0.98584 0.94602 1.18621 0.84707 0.85992 1.00446 1.43695 1.55800 1.10602 1.05230 1.19795 1.37956 1.05590 0.80108 0.87241 1.25277 0.95188 0.96600 1.00217 1.70021 1.27085 1.22085 1.31490 0.85867 0.78384 0.79292 0.80889 1.20202 1.21004 1.19322 1.19288 0.86351 0.86492 0.84179 1.90593 1.47583 1.20536 1.85221 1.22465 0.92493 0.94847 0.88793 0.89668 1.22471 0.93842 1.05034 1.02448 1.86324 1.69256 1.40895 1.21914 1.18773 0.90360 0.91087 0.85575 1.21417 1.06397 0.95602 1.00198 1.21174 0.94063 0.99075 0.92136 1.20991 1.01568 0.95367 1.00910 1.20839 0.96222 0.94836 0.93524 1.19354 1.08618 0.96309 0.98418 1.17983 0.75830 0.85640 0.74299 1.93119 1.76185 1.90605 1.56841 1.93264 1.74942 1.96469 1.50241 1.93232 1.56666 1.70797 1.94609 0.78416 0.85982 0.92642 0.91903 0.88848 0.91770 0.90939 0.83964 0.84903 0.84956 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.09 18.65 29.55 0.55 -4.54 16 2 C -0.10 -2.07 8.90 -37.12 -0.33 -2.40 16 3 C 0.23 4.68 4.90 -6.82 -0.03 4.65 16 4 N -0.43 -10.55 2.59 -117.94 -0.31 -10.86 16 5 C -0.31 -8.22 9.48 -14.93 -0.14 -8.36 16 6 H 0.11 3.13 7.24 -52.49 -0.38 2.75 16 7 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 8 N -0.87 -21.37 8.55 55.50 0.47 -20.90 16 9 Si 0.93 20.06 29.59 -169.99 -5.03 15.03 16 10 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 13 C 0.45 10.89 6.91 -10.99 -0.08 10.82 16 14 O -0.56 -15.84 16.17 -13.82 -0.22 -16.06 16 15 C 0.07 1.38 1.89 -27.89 -0.05 1.32 16 16 H 0.09 1.37 4.63 -51.93 -0.24 1.13 16 17 C -0.18 -2.99 8.97 37.16 0.33 -2.66 16 18 O -0.27 -5.30 8.30 -38.79 -0.32 -5.62 16 19 C 0.19 2.98 6.44 -39.22 -0.25 2.72 16 20 C -0.22 -2.68 8.14 -39.43 -0.32 -3.00 16 21 C -0.05 -0.44 10.04 -39.60 -0.40 -0.84 16 22 C -0.17 -1.55 10.04 -39.56 -0.40 -1.95 16 23 C -0.04 -0.40 9.43 -39.60 -0.37 -0.77 16 24 C -0.22 -3.27 5.38 -104.47 -0.56 -3.83 16 25 C 0.52 8.31 2.99 36.01 0.11 8.41 16 26 F -0.19 -2.57 15.97 2.25 0.04 -2.53 16 27 F -0.17 -3.11 16.95 2.25 0.04 -3.07 16 28 F -0.17 -3.05 16.95 2.25 0.04 -3.01 16 29 H 0.20 3.10 7.80 -54.08 -0.42 2.67 16 30 H 0.12 2.70 6.26 -51.93 -0.32 2.37 16 31 H 0.06 0.94 5.89 -51.94 -0.31 0.63 16 32 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 33 H 0.09 1.57 4.42 -51.93 -0.23 1.34 16 34 H 0.06 0.87 6.80 -51.93 -0.35 0.52 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.14 1.60 5.44 -52.49 -0.29 1.31 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.14 1.24 7.16 -52.49 -0.38 0.86 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -31.43 341.87 -5.50 -36.93 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.32 Total: 4.69 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.04 Total: 0.25 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.17 Total: -31.76 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.55 Total: -21.68 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.11 Total: -8.61 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.43 -5.50 -36.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.284 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds