Wall clock time and date at job start Tue Mar 31 2020 23:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46831 * 172.18271 * 3 2 1 5 5 C 1.37099 * 119.99730 * 274.43406 * 4 3 2 6 6 H 1.07995 * 120.00005 * 186.58433 * 5 4 3 7 7 C 1.38947 * 120.00493 * 6.58402 * 5 4 3 8 8 N 1.31419 * 119.99974 * 18.28307 * 7 5 4 9 9 Si 1.86801 * 120.00401 * 198.28400 * 7 5 4 10 10 H 1.48501 * 109.46891 * 89.99768 * 9 7 5 11 11 H 1.48494 * 109.47346 * 209.99781 * 9 7 5 12 12 H 1.48499 * 109.46936 * 329.99994 * 9 7 5 13 13 C 1.34774 * 119.99828 * 94.43478 * 4 3 2 14 14 O 1.21295 * 119.99696 * 175.59293 * 13 4 3 15 15 C 1.50692 * 119.99950 * 355.86679 * 13 4 3 16 16 H 1.09001 * 109.47558 * 43.50501 * 15 13 4 17 17 C 1.52995 * 109.47310 * 283.50436 * 15 13 4 18 18 O 1.42910 * 109.46933 * 163.50739 * 15 13 4 19 19 C 1.35900 * 116.99621 * 203.24819 * 18 15 13 20 20 C 1.38750 * 120.05874 * 354.82713 * 19 18 15 21 21 C 1.38125 * 119.94388 * 180.02562 * 20 19 18 22 22 C 1.38288 * 120.05422 * 0.02562 * 21 20 19 23 23 C 1.38240 * 120.11557 * 0.02562 * 22 21 20 24 24 C 1.38171 * 120.05186 * 359.67436 * 23 22 21 25 25 C 1.50702 * 120.02677 * 180.29589 * 24 23 22 26 26 F 1.39900 * 109.47048 * 0.32612 * 25 24 23 27 27 F 1.39901 * 109.46676 * 120.32746 * 25 24 23 28 28 F 1.39902 * 109.47243 * 240.32254 * 25 24 23 29 29 H 4.40641 * 5.51474 * 179.97438 * 4 1 2 30 30 H 1.09004 * 109.47309 * 52.18723 * 3 2 1 31 31 H 1.08989 * 109.47196 * 292.18106 * 3 2 1 32 32 H 0.96993 * 120.00217 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47560 * 65.25528 * 17 15 13 34 34 H 1.09000 * 109.47779 * 185.25798 * 17 15 13 35 35 H 1.09002 * 109.47063 * 305.25426 * 17 15 13 36 36 H 1.07996 * 120.02755 * 359.97438 * 20 19 18 37 37 H 1.08003 * 119.97233 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.94108 * 179.97438 * 22 21 20 39 39 H 1.07994 * 119.97615 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3694 -0.1879 5 6 3.2753 1.8790 -1.4527 6 1 3.7336 2.8461 -1.5970 7 6 2.8293 1.1511 -2.5491 8 7 1.9689 0.1719 -2.3818 9 14 3.4526 1.5644 -4.2609 10 1 4.6760 0.7727 -4.5466 11 1 2.4056 1.2362 -5.2615 12 1 3.7716 3.0128 -4.3351 13 6 3.4430 2.1274 0.8827 14 8 3.9219 3.2308 0.7265 15 6 3.1997 1.6016 2.2738 16 1 3.5245 0.5627 2.3316 17 6 1.7069 1.6879 2.5978 18 8 3.9373 2.3845 3.2147 19 6 4.2350 1.7998 4.4048 20 6 3.7352 0.5407 4.7048 21 6 4.0388 -0.0512 5.9154 22 6 4.8398 0.6103 6.8281 23 6 5.3382 1.8653 6.5321 24 6 5.0425 2.4590 5.3200 25 6 5.5916 3.8243 4.9951 26 9 6.3715 4.2796 6.0636 27 9 6.3799 3.7475 3.8418 28 9 4.5332 4.7131 4.7781 29 1 -1.0502 -0.0004 -0.0001 30 1 3.0096 -0.6292 -0.8119 31 1 3.0095 -0.3871 0.9515 32 1 1.6573 -0.3359 -3.1471 33 1 1.1529 1.0184 1.9398 34 1 1.5427 1.3959 3.6350 35 1 1.3615 2.7111 2.4495 36 1 3.1085 0.0242 3.9928 37 1 3.6496 -1.0311 6.1496 38 1 5.0757 0.1460 7.7743 39 1 5.9632 2.3800 7.2467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491014820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:33 Heat of formation + Delta-G solvation = -128.396941 kcal Electronic energy + Delta-G solvation = -30440.467328 eV Core-core repulsion = 25708.004688 eV Total energy + Delta-G solvation = -4732.462640 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.103 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.13896 -48.68060 -48.60344 -41.79890 -40.43456 -38.53754 -37.15803 -34.37686 -33.31387 -33.13803 -32.20135 -30.99962 -28.42655 -27.05506 -26.87468 -25.35411 -23.56270 -23.00365 -20.95952 -20.08294 -19.76412 -19.47336 -19.41213 -18.53933 -18.31775 -17.97451 -17.07867 -16.75417 -16.37406 -16.15007 -15.84215 -15.71072 -15.50129 -15.44722 -15.37219 -15.04868 -14.79895 -14.79576 -14.75436 -14.52039 -14.32310 -13.88467 -13.69725 -13.56611 -13.41690 -13.29477 -12.91497 -12.76458 -12.54025 -12.48861 -12.20621 -12.09983 -11.94453 -11.30124 -11.00091 -10.61650 -10.31701 -10.26671 -9.96909 -9.38887 -8.33822 -5.95351 -0.05686 0.29257 1.32187 1.40360 1.48997 1.64098 1.75509 1.77531 2.20646 2.31690 2.43187 2.51456 2.77723 2.99434 3.05487 3.09514 3.41753 3.55012 3.70531 3.85586 3.89338 3.96703 4.02086 4.18306 4.34832 4.41068 4.56790 4.57920 4.65137 4.76764 5.04926 5.06248 5.11994 5.26015 5.40034 5.42714 5.46031 5.66424 5.90498 6.17708 6.40387 7.06802 7.17962 7.30763 7.85170 8.58941 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.016001 B = 0.003637 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.465456 B = 7697.583867 C = 8784.689432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.137 4.137 3 C 0.226 3.774 4 N -0.439 5.439 5 C -0.351 4.351 6 H 0.073 0.927 7 C 0.010 3.990 8 N -0.865 5.865 9 Si 0.985 3.015 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.283 1.283 13 C 0.433 3.567 14 O -0.619 6.619 15 C 0.088 3.912 16 H 0.114 0.886 17 C -0.169 4.169 18 O -0.311 6.311 19 C 0.152 3.848 20 C -0.221 4.221 21 C -0.034 4.034 22 C -0.151 4.151 23 C -0.038 4.038 24 C -0.244 4.244 25 C 0.509 3.491 26 F -0.174 7.174 27 F -0.190 7.190 28 F -0.189 7.189 29 H 0.231 0.769 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.276 0.724 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -7.983 18.531 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.139 4.139 3 C 0.104 3.896 4 N -0.158 5.158 5 C -0.478 4.478 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.502 5.502 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.222 3.778 14 O -0.505 6.505 15 C 0.029 3.971 16 H 0.131 0.869 17 C -0.226 4.226 18 O -0.224 6.224 19 C 0.105 3.895 20 C -0.240 4.240 21 C -0.052 4.052 22 C -0.169 4.169 23 C -0.056 4.056 24 C -0.246 4.246 25 C 0.455 3.545 26 F -0.155 7.155 27 F -0.172 7.172 28 F -0.170 7.170 29 H 0.248 0.752 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.170 0.830 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.306 -7.362 18.201 19.677 hybrid contribution 0.057 0.985 -1.615 1.893 sum 1.363 -6.377 16.586 17.822 Atomic orbital electron populations 1.25067 0.96224 0.99918 1.05373 1.23020 0.94474 1.00216 0.96174 1.18669 0.85353 0.83751 1.01810 1.43854 1.55324 1.11905 1.04670 1.19595 1.40416 1.05436 0.82317 0.90884 1.25856 0.94701 0.96263 1.02528 1.70120 1.26063 1.21543 1.32451 0.85059 0.78461 0.78258 0.77283 1.19088 1.19643 1.20820 1.20310 0.85150 0.85950 0.86423 1.90534 1.50163 1.23258 1.86594 1.22209 0.93766 0.95479 0.85651 0.86877 1.22396 0.92141 1.03497 1.04570 1.86259 1.70286 1.42197 1.23609 1.19133 0.92613 0.93012 0.84730 1.21632 1.06345 0.94236 1.01739 1.21684 0.92711 1.00301 0.90491 1.21528 0.99324 0.93963 1.02090 1.21194 0.96273 0.95793 0.92293 1.19491 1.09649 0.95422 1.00017 1.18375 0.75456 0.86753 0.73897 1.93126 1.75840 1.90645 1.55899 1.93211 1.75560 1.96613 1.51785 1.93189 1.57440 1.71624 1.94754 0.75225 0.87612 0.88828 0.91382 0.88759 0.88225 0.93535 0.82975 0.80787 0.80795 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.93 18.65 74.32 1.39 -7.55 16 2 C -0.14 -5.52 8.90 31.13 0.28 -5.25 16 3 C 0.23 9.35 4.90 84.57 0.41 9.77 16 4 N -0.44 -22.22 2.59 -645.42 -1.67 -23.89 16 5 C -0.35 -19.70 9.48 84.04 0.80 -18.90 16 6 H 0.07 4.54 7.24 -2.91 -0.02 4.52 16 7 C 0.01 0.52 5.11 84.92 0.43 0.95 16 8 N -0.86 -42.21 8.55 21.66 0.19 -42.02 16 9 Si 0.99 41.63 29.59 68.60 2.03 43.66 16 10 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.43 22.09 6.91 87.65 0.61 22.70 16 14 O -0.62 -38.09 16.17 15.44 0.25 -37.84 16 15 C 0.09 3.35 1.89 29.84 0.06 3.40 16 16 H 0.11 3.51 4.63 -2.39 -0.01 3.50 16 17 C -0.17 -5.52 8.97 71.98 0.65 -4.88 16 18 O -0.31 -12.51 8.30 -73.91 -0.61 -13.12 16 19 C 0.15 4.67 6.44 22.51 0.14 4.81 16 20 C -0.22 -4.79 8.14 22.37 0.18 -4.60 16 21 C -0.03 -0.48 10.04 22.25 0.22 -0.25 16 22 C -0.15 -1.98 10.04 22.28 0.22 -1.75 16 23 C -0.04 -0.72 9.43 22.25 0.21 -0.51 16 24 C -0.24 -6.97 5.38 -19.77 -0.11 -7.07 16 25 C 0.51 17.01 2.99 71.24 0.21 17.22 16 26 F -0.17 -4.82 15.97 44.97 0.72 -4.11 16 27 F -0.19 -7.53 16.95 44.97 0.76 -6.77 16 28 F -0.19 -7.12 16.95 44.97 0.76 -6.36 16 29 H 0.23 6.40 7.80 -4.41 -0.03 6.37 16 30 H 0.11 4.68 6.26 -2.39 -0.01 4.67 16 31 H 0.09 3.04 5.89 -2.39 -0.01 3.03 16 32 H 0.28 12.70 8.31 -92.71 -0.77 11.93 16 33 H 0.09 3.05 4.42 -2.39 -0.01 3.04 16 34 H 0.10 2.49 6.80 -2.39 -0.02 2.48 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.15 2.88 5.44 -2.91 -0.02 2.87 16 37 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.16 2.32 7.16 -2.91 -0.02 2.30 16 Total: -1.00 -75.35 341.87 9.25 -66.10 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.13 Total: 16.26 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.71 Total: 8.09 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -1.49 Total: -65.91 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -0.36 Total: -50.97 kcal Atomic # 9 Polarization: -19.47 SS G_CDS: 2.24 Total: -17.23 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -75.35 9.25 -66.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491014820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.300 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds