Wall clock time and date at job start Tue Mar 31 2020 22:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 N 1.46496 * 109.47070 * 185.00131 * 4 2 1 6 6 C 1.34775 * 119.99828 * 180.02562 * 5 4 2 7 7 O 1.21530 * 120.00171 * 359.97438 * 6 5 4 8 8 C 1.48052 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.39381 * 119.69069 * 179.72307 * 8 6 5 10 10 C 1.38469 * 119.09507 * 179.79623 * 9 8 6 11 11 C 1.38904 * 118.46305 * 0.47239 * 10 9 8 12 12 F 1.35107 * 120.34501 * 179.77186 * 11 10 9 13 13 C 1.38869 * 119.30141 * 359.74761 * 11 10 9 14 14 N 1.31457 * 120.85717 * 0.02562 * 13 11 10 15 15 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 16 16 C 1.34774 * 119.99618 * 275.00242 * 15 2 1 17 17 O 1.21281 * 120.00442 * 359.97438 * 16 15 2 18 18 C 1.50698 * 119.99927 * 179.97438 * 16 15 2 19 19 S 1.81005 * 109.47336 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00239 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99938 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47050 * 89.99700 * 24 22 20 26 26 H 1.48498 * 109.47612 * 209.99959 * 24 22 20 27 27 H 1.48507 * 109.47238 * 330.00177 * 24 22 20 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 32 32 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 33 33 H 0.97001 * 120.00404 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.45447 * 0.02562 * 9 8 6 35 35 H 1.07998 * 120.76905 * 180.22477 * 10 9 8 36 36 H 1.08005 * 119.57429 * 179.97438 * 13 11 10 37 37 H 0.96990 * 120.00057 * 94.99539 * 15 2 1 38 38 H 1.09005 * 109.46834 * 299.99458 * 18 16 15 39 39 H 1.08998 * 109.47729 * 59.99510 * 18 16 15 40 40 H 0.96993 * 119.99551 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1912 7 8 3.5687 -1.8842 -3.1419 8 6 5.6486 -1.5341 -2.1321 9 6 6.3376 -2.1630 -3.1677 10 6 7.7179 -2.2513 -3.1019 11 6 8.3636 -1.7150 -1.9951 12 9 9.7088 -1.7842 -1.8897 13 6 7.6119 -1.1067 -0.9984 14 7 6.3026 -1.0340 -1.0908 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8590 1.1586 2.4115 18 6 2.6489 -0.7287 3.5877 19 16 2.7106 0.4346 4.9731 20 6 3.3123 -0.6310 6.2408 21 1 3.5203 -1.6679 6.0212 22 6 3.5190 -0.1380 7.5217 23 7 3.2651 1.1256 7.7895 24 14 4.1562 -1.2677 8.8658 25 1 5.6407 -1.2315 8.8805 26 1 3.6370 -0.8143 10.1811 27 1 3.6976 -2.6558 8.6045 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7199 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 3.9824 -0.4622 -0.4319 34 1 5.8026 -2.5726 -4.0117 35 1 8.2792 -2.7295 -3.8910 36 1 8.1093 -0.6887 -0.1357 37 1 2.2490 -1.6317 1.1526 38 1 1.9759 -1.5505 3.8326 39 1 3.6480 -1.1213 3.3987 40 1 3.4092 1.4700 8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295469761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:14 Heat of formation + Delta-G solvation = -84.806683 kcal Electronic energy + Delta-G solvation = -25822.548824 eV Core-core repulsion = 21678.109537 eV Total energy + Delta-G solvation = -4144.439286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.55229 -41.05277 -39.72809 -39.00725 -36.43104 -34.05325 -33.02489 -32.44041 -31.85200 -31.23991 -28.61122 -26.98178 -25.49729 -24.77770 -24.16905 -21.86746 -21.19010 -20.38177 -18.79090 -18.09873 -17.93479 -17.72629 -16.64113 -16.39913 -16.37020 -16.04217 -15.56661 -15.28429 -14.92083 -14.81433 -14.60091 -14.35933 -14.23635 -13.85153 -13.74571 -13.31925 -13.16173 -13.07504 -12.93735 -12.74502 -12.57717 -12.07939 -11.85889 -11.19126 -11.07196 -11.03687 -10.77099 -10.75588 -10.58208 -10.15322 -9.82997 -9.64577 -9.47561 -9.33803 -9.09053 -9.01403 -8.25400 -6.51301 -6.23032 -3.93509 -0.04919 0.49336 2.21011 2.64453 2.98827 3.04288 3.21389 3.25244 3.27011 3.30612 3.36237 3.63729 3.68768 4.10598 4.18757 4.19211 4.29881 4.38381 4.73132 4.88065 5.07415 5.11524 5.12130 5.13667 5.24295 5.24859 5.31855 5.42924 5.53186 5.63792 5.86478 5.91161 5.93319 5.97652 6.12438 6.15802 6.55686 6.92919 7.23378 7.58325 7.63061 7.77351 8.33979 8.55385 9.22523 10.84376 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002705 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.782234 B =10350.254988 C =12914.037555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.096 0.904 4 C 0.111 3.889 5 N -0.707 5.707 6 C 0.574 3.426 7 O -0.533 6.533 8 C 0.065 3.935 9 C -0.082 4.082 10 C -0.117 4.117 11 C 0.072 3.928 12 F -0.123 7.123 13 C 0.080 3.920 14 N -0.427 5.427 15 N -0.737 5.737 16 C 0.535 3.465 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.417 0.583 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.399 0.601 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 -7.688 -23.788 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.013 4.013 5 N -0.359 5.359 6 C 0.359 3.641 7 O -0.410 6.410 8 C -0.073 4.073 9 C -0.103 4.103 10 C -0.143 4.143 11 C 0.051 3.949 12 F -0.101 7.101 13 C -0.081 4.081 14 N -0.137 5.137 15 N -0.393 5.393 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.254 0.746 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.196 0.804 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.078 -5.479 -23.571 24.541 hybrid contribution 1.931 -2.808 0.557 3.453 sum 6.009 -8.287 -23.014 25.188 Atomic orbital electron populations 1.22115 0.94019 1.02577 1.03270 1.21142 0.95068 0.97968 0.83204 0.88556 1.21815 0.79310 1.01890 0.98300 1.45854 1.07894 1.58301 1.23829 1.17699 0.85329 0.78432 0.82678 1.90808 1.68613 1.48301 1.33258 1.21238 0.94764 0.99079 0.92237 1.22045 0.93240 0.95772 0.99201 1.21712 0.94935 0.99748 0.97903 1.19107 0.78432 1.00388 0.97016 1.91572 1.28493 1.94051 1.95994 1.23042 0.89159 0.97399 0.98545 1.67639 1.09109 1.14479 1.22497 1.46140 1.69607 1.14041 1.09489 1.20319 0.76706 0.87211 0.83680 1.90709 1.48069 1.15696 1.84301 1.23540 1.03706 1.04893 0.98349 1.85388 1.86361 1.12747 0.98735 1.22864 1.51000 0.98109 0.96385 0.90956 1.24988 0.95091 0.95539 0.97951 1.70017 1.45494 1.13214 1.21568 0.86175 0.79009 0.80205 0.80155 1.20263 1.20761 1.19704 0.90967 0.91472 0.92160 0.90392 0.89597 0.74572 0.82301 0.82616 0.80406 0.76736 0.89252 0.89186 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.13 1.35 2.73 -67.93 -0.19 1.17 16 3 H 0.10 1.16 7.58 -51.93 -0.39 0.76 16 4 C 0.11 0.96 5.23 -4.04 -0.02 0.94 16 5 N -0.71 -6.89 5.38 -61.18 -0.33 -7.22 16 6 C 0.57 6.18 7.81 -12.24 -0.10 6.09 16 7 O -0.53 -6.82 16.32 5.34 0.09 -6.73 16 8 C 0.07 0.63 6.75 -83.02 -0.56 0.07 16 9 C -0.08 -0.61 9.63 -39.07 -0.38 -0.99 16 10 C -0.12 -0.72 10.15 -39.25 -0.40 -1.12 16 11 C 0.07 0.53 7.36 -39.10 -0.29 0.25 16 12 F -0.12 -0.96 17.28 2.25 0.04 -0.92 16 13 C 0.08 0.65 11.17 -17.48 -0.20 0.46 16 14 N -0.43 -4.17 9.53 -9.74 -0.09 -4.27 16 15 N -0.74 -8.82 4.52 -53.80 -0.24 -9.07 16 16 C 0.53 9.25 7.81 -10.99 -0.09 9.16 16 17 O -0.51 -10.90 15.52 5.56 0.09 -10.82 16 18 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 19 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.52 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 24 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.42 4.25 7.46 -40.82 -0.30 3.95 16 34 H 0.16 1.01 7.64 -52.49 -0.40 0.61 16 35 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 36 H 0.18 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 38 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 373.00 15.07 5.62 5.62 Total: -1.00 -35.02 373.00 -7.57 -42.58 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.80 Total: 4.27 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.43 Total: -0.68 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.07 Total: -45.72 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.17 Total: -17.55 kcal Atomic # 9 Polarization: -0.96 SS G_CDS: 0.04 Total: -0.92 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.02 -7.57 -42.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295469761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.223 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds