Wall clock time and date at job start Tue Mar 31 2020 22:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 N 1.46496 * 109.47070 * 185.00131 * 4 2 1 6 6 C 1.34775 * 119.99828 * 180.02562 * 5 4 2 7 7 O 1.21530 * 120.00171 * 359.97438 * 6 5 4 8 8 C 1.48052 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.39381 * 119.69069 * 179.72307 * 8 6 5 10 10 C 1.38469 * 119.09507 * 179.79623 * 9 8 6 11 11 C 1.38904 * 118.46305 * 0.47239 * 10 9 8 12 12 F 1.35107 * 120.34501 * 179.77186 * 11 10 9 13 13 C 1.38869 * 119.30141 * 359.74761 * 11 10 9 14 14 N 1.31457 * 120.85717 * 0.02562 * 13 11 10 15 15 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 16 16 C 1.34774 * 119.99618 * 275.00242 * 15 2 1 17 17 O 1.21281 * 120.00442 * 359.97438 * 16 15 2 18 18 C 1.50698 * 119.99927 * 179.97438 * 16 15 2 19 19 S 1.81005 * 109.47336 * 179.97438 * 18 16 15 20 20 C 1.76203 * 99.99914 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00239 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99809 * 179.97438 * 20 19 18 23 23 N 1.31637 * 119.99938 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47050 * 89.99700 * 24 22 20 26 26 H 1.48498 * 109.47612 * 209.99959 * 24 22 20 27 27 H 1.48507 * 109.47238 * 330.00177 * 24 22 20 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 32 32 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 33 33 H 0.97001 * 120.00404 * 359.97438 * 5 4 2 34 34 H 1.07999 * 120.45447 * 0.02562 * 9 8 6 35 35 H 1.07998 * 120.76905 * 180.22477 * 10 9 8 36 36 H 1.08005 * 119.57429 * 179.97438 * 13 11 10 37 37 H 0.96990 * 120.00057 * 94.99539 * 15 2 1 38 38 H 1.09005 * 109.46834 * 299.99458 * 18 16 15 39 39 H 1.08998 * 109.47729 * 59.99510 * 18 16 15 40 40 H 0.96993 * 119.99551 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1730 -1.4283 -2.1912 7 8 3.5687 -1.8842 -3.1419 8 6 5.6486 -1.5341 -2.1321 9 6 6.3376 -2.1630 -3.1677 10 6 7.7179 -2.2513 -3.1019 11 6 8.3636 -1.7150 -1.9951 12 9 9.7088 -1.7842 -1.8897 13 6 7.6119 -1.1067 -0.9984 14 7 6.3026 -1.0340 -1.0908 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8590 1.1586 2.4115 18 6 2.6489 -0.7287 3.5877 19 16 2.7106 0.4346 4.9731 20 6 3.3123 -0.6310 6.2408 21 1 3.5203 -1.6679 6.0212 22 6 3.5190 -0.1380 7.5217 23 7 3.2651 1.1256 7.7895 24 14 4.1562 -1.2677 8.8658 25 1 5.6407 -1.2315 8.8805 26 1 3.6370 -0.8143 10.1811 27 1 3.6976 -2.6558 8.6045 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7199 -1.2951 32 1 1.7516 -0.1584 -2.1369 33 1 3.9824 -0.4622 -0.4319 34 1 5.8026 -2.5726 -4.0117 35 1 8.2792 -2.7295 -3.8910 36 1 8.1093 -0.6887 -0.1357 37 1 2.2490 -1.6317 1.1526 38 1 1.9759 -1.5505 3.8326 39 1 3.6480 -1.1213 3.3987 40 1 3.4092 1.4700 8.6847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001295469761.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:13 Heat of formation + Delta-G solvation = -110.577163 kcal Electronic energy + Delta-G solvation = -25823.666316 eV Core-core repulsion = 21678.109537 eV Total energy + Delta-G solvation = -4145.556778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.14609 -41.75228 -40.84632 -39.93859 -37.48117 -34.98495 -34.56992 -33.66953 -32.79261 -32.09493 -30.00988 -27.73486 -27.64065 -25.41619 -24.79482 -22.88689 -21.92850 -21.60567 -19.92511 -19.40058 -18.66760 -18.51645 -17.94104 -17.38776 -17.02285 -16.92019 -16.86573 -16.40568 -16.35300 -16.09735 -15.82182 -15.28634 -14.96503 -14.80883 -14.64161 -14.42185 -14.39845 -14.04544 -13.90760 -13.67995 -13.56733 -13.25659 -13.14725 -12.95942 -12.88348 -12.58053 -12.05874 -11.71141 -11.54715 -11.14150 -11.13169 -10.93171 -10.81776 -10.35865 -10.25444 -10.18428 -10.06380 -8.64043 -8.33647 -6.10761 -0.68317 -0.06001 1.28022 1.42791 1.47297 1.48629 1.57947 1.63062 1.91482 2.25827 2.30647 2.58947 2.76447 3.00599 3.01547 3.33442 3.53502 3.56840 3.65394 3.73636 3.99202 4.06058 4.10942 4.25498 4.34591 4.53441 4.56187 4.58503 4.66318 4.71134 4.75707 4.79517 5.01266 5.18429 5.33916 5.38147 5.43137 5.48285 6.19820 6.20975 6.47960 6.51986 6.97557 7.08067 7.24958 8.75428 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002705 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.782234 B =10350.254988 C =12914.037555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.079 0.921 4 C 0.119 3.881 5 N -0.706 5.706 6 C 0.574 3.426 7 O -0.557 6.557 8 C 0.045 3.955 9 C -0.079 4.079 10 C -0.104 4.104 11 C 0.072 3.928 12 F -0.124 7.124 13 C 0.071 3.929 14 N -0.447 5.447 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.559 6.559 18 C -0.131 4.131 19 S -0.147 6.147 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.996 3.004 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.415 0.585 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.190 0.810 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.304 -10.127 -25.159 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.357 5.357 6 C 0.360 3.640 7 O -0.435 6.435 8 C -0.092 4.092 9 C -0.100 4.100 10 C -0.130 4.130 11 C 0.050 3.950 12 F -0.103 7.103 13 C -0.091 4.091 14 N -0.158 5.158 15 N -0.366 5.366 16 C 0.326 3.674 17 O -0.436 6.436 18 C -0.283 4.283 19 S 0.080 5.920 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.818 3.182 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.252 0.748 34 H 0.188 0.812 35 H 0.205 0.795 36 H 0.207 0.793 37 H 0.250 0.750 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.873 -7.955 -24.980 26.665 hybrid contribution 1.699 -2.068 0.838 2.804 sum 6.571 -10.023 -24.142 26.954 Atomic orbital electron populations 1.22073 0.92996 1.03529 1.02935 1.21223 0.95767 0.97138 0.82810 0.90292 1.21804 0.78801 1.02462 0.97400 1.45889 1.08271 1.57938 1.23572 1.17872 0.85894 0.77949 0.82308 1.90788 1.69219 1.49480 1.34034 1.21224 0.94308 1.00481 0.93229 1.22200 0.93778 0.95131 0.98849 1.22013 0.94470 0.98539 0.97961 1.19163 0.78292 1.00290 0.97242 1.91572 1.28639 1.94052 1.96028 1.23269 0.88864 0.97610 0.99336 1.67584 1.09877 1.15290 1.23048 1.45867 1.67822 1.14522 1.08405 1.19961 0.76531 0.86524 0.84419 1.90703 1.50357 1.17542 1.85022 1.23385 1.05471 1.03222 0.96191 1.85544 1.86716 1.17062 1.02650 1.23201 1.50830 0.98421 0.96904 0.90047 1.26097 0.95112 0.97164 1.00717 1.70180 1.46858 1.15434 1.22280 0.84982 0.78540 0.78232 0.76411 1.19292 1.20386 1.18277 0.93924 0.89210 0.90534 0.89083 0.88500 0.74848 0.81172 0.79542 0.79328 0.74972 0.87479 0.87317 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.48 71.98 0.68 -2.09 16 2 C 0.14 2.62 2.73 44.99 0.12 2.74 16 3 H 0.08 1.88 7.58 -2.39 -0.02 1.86 16 4 C 0.12 1.83 5.23 86.38 0.45 2.28 16 5 N -0.71 -12.88 5.38 -465.78 -2.50 -15.38 16 6 C 0.57 11.71 7.81 86.85 0.68 12.38 16 7 O -0.56 -13.47 16.32 -3.81 -0.06 -13.53 16 8 C 0.05 0.82 6.75 41.89 0.28 1.10 16 9 C -0.08 -1.04 9.63 22.60 0.22 -0.82 16 10 C -0.10 -1.03 10.15 22.48 0.23 -0.81 16 11 C 0.07 0.94 7.36 22.58 0.17 1.11 16 12 F -0.12 -1.73 17.28 44.97 0.78 -0.96 16 13 C 0.07 1.09 11.17 84.90 0.95 2.04 16 14 N -0.45 -8.43 9.53 -184.74 -1.76 -10.19 16 15 N -0.71 -16.08 4.52 -442.52 -2.00 -18.08 16 16 C 0.54 18.55 7.81 87.66 0.68 19.24 16 17 O -0.56 -24.34 15.52 -3.03 -0.05 -24.38 16 18 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 19 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 20 C -0.55 -30.78 9.50 67.95 0.65 -30.14 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -55.55 13.22 21.65 0.29 -55.27 16 24 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.41 8.11 7.46 -92.71 -0.69 7.42 16 34 H 0.17 1.82 7.64 -2.91 -0.02 1.79 16 35 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.41 7.13 8.60 -92.72 -0.80 6.34 16 38 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 40 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.18 373.00 1.18 -76.99 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.39 Total: 20.96 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.01 Total: 3.71 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -5.98 Total: -98.92 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.11 Total: -37.91 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.78 Total: -0.96 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -78.18 1.18 -76.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295469761.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.584 kcal (2) G-P(sol) polarization free energy of solvation -78.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds