Wall clock time and date at job start Tue Mar 31 2020 23:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00725 * 2 1 4 4 C 1.52998 * 109.47348 * 89.99656 * 3 2 1 5 5 N 1.46496 * 109.47348 * 180.02562 * 4 3 2 6 6 C 1.34773 * 119.99944 * 180.02562 * 5 4 3 7 7 O 1.21511 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.48160 * 119.99774 * 179.97438 * 6 5 4 9 9 C 1.39898 * 120.90940 * 359.97438 * 8 6 5 10 10 C 1.38044 * 119.06578 * 180.02562 * 9 8 6 11 11 N 1.31872 * 120.93533 * 0.02562 * 10 9 8 12 12 C 1.31971 * 122.01628 * 359.65622 * 11 10 9 13 13 F 1.35098 * 119.59075 * 180.33947 * 12 11 10 14 14 C 1.38520 * 120.82114 * 0.64271 * 12 11 10 15 15 C 1.34780 * 119.99745 * 180.02562 * 2 1 3 16 16 O 1.21277 * 120.00158 * 179.97438 * 15 2 1 17 17 C 1.50701 * 119.99722 * 0.02562 * 15 2 1 18 18 S 1.81006 * 109.47126 * 180.02562 * 17 15 2 19 19 C 1.76196 * 99.99955 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00555 * 0.02562 * 19 18 17 21 21 C 1.38800 * 119.99756 * 179.97438 * 19 18 17 22 22 N 1.31632 * 120.00292 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99956 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47581 * 60.00133 * 23 21 19 25 25 H 1.48504 * 109.47410 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47297 * 299.99822 * 23 21 19 27 27 H 1.08998 * 109.47380 * 89.99638 * 1 2 3 28 28 H 1.09003 * 109.47489 * 210.00288 * 1 2 3 29 29 H 1.09006 * 109.46494 * 330.00296 * 1 2 3 30 30 H 1.09000 * 109.46485 * 329.99870 * 3 2 1 31 31 H 1.08997 * 109.47618 * 210.00463 * 3 2 1 32 32 H 1.09001 * 109.46728 * 60.00299 * 4 3 2 33 33 H 1.09006 * 109.47266 * 300.00654 * 4 3 2 34 34 H 0.97003 * 119.99939 * 359.97438 * 5 4 3 35 35 H 1.07996 * 120.46361 * 359.97438 * 9 8 6 36 36 H 1.08001 * 119.52719 * 180.02562 * 10 9 8 37 37 H 1.08002 * 120.51468 * 179.67964 * 14 12 11 38 38 H 1.09001 * 109.47214 * 299.99994 * 17 15 2 39 39 H 1.08999 * 109.47592 * 60.00332 * 17 15 2 40 40 H 0.97001 * 120.00433 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 1.4425 5 7 3.1847 2.9792 1.4425 6 6 3.5220 3.5626 2.6096 7 8 3.2185 3.0363 3.6620 8 6 4.2629 4.8456 2.6096 9 6 4.6224 5.4678 1.4093 10 6 5.3129 6.6624 1.4536 11 7 5.6343 7.2172 2.6060 12 6 5.3100 6.6683 3.7614 13 9 5.6582 7.2828 4.9131 14 6 4.6224 5.4667 3.8082 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1674 -0.0010 17 6 1.3852 -2.4723 -0.0017 18 16 2.5613 -3.8482 -0.0014 19 6 1.4411 -5.2082 -0.0021 20 1 0.3758 -5.0305 -0.0029 21 6 1.9278 -6.5081 -0.0026 22 7 3.2261 -6.7249 -0.0021 23 14 0.7402 -7.9500 -0.0041 24 1 -0.1142 -7.8865 -1.2169 25 1 1.5062 -9.2223 -0.0038 26 1 -0.1155 -7.8878 1.2081 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3632 0.8901 0.5138 30 1 1.6086 2.0282 -0.5139 31 1 3.1500 1.1383 -0.5139 32 1 3.0416 0.9506 1.9563 33 1 1.5002 1.8407 1.9563 34 1 3.4274 3.3992 0.6024 35 1 4.3642 5.0195 0.4613 36 1 5.5938 7.1494 0.5315 37 1 4.3640 5.0192 4.7566 38 1 0.7582 -2.5306 0.8880 39 1 0.7589 -2.5295 -0.8920 40 1 3.5663 -7.6333 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704191663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:51 Heat of formation + Delta-G solvation = -65.875627 kcal Electronic energy + Delta-G solvation = -25305.967793 eV Core-core repulsion = 21162.349419 eV Total energy + Delta-G solvation = -4143.618374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.51798 -41.11616 -39.81611 -39.29129 -36.18013 -34.87817 -33.48389 -32.45988 -31.62260 -30.69730 -28.50505 -26.74340 -25.60209 -25.25955 -24.21531 -23.08399 -21.37850 -19.61337 -18.86892 -17.94619 -17.74799 -17.14071 -16.82408 -16.63525 -16.49276 -16.33450 -15.79999 -15.51811 -15.39031 -14.83280 -14.80621 -14.33103 -14.17610 -14.01583 -13.86528 -13.54770 -13.33000 -13.04951 -12.81949 -12.61055 -12.48400 -12.44322 -11.90294 -11.64022 -11.08035 -11.06291 -10.87021 -10.79499 -10.65597 -10.27193 -9.85697 -9.68758 -9.55865 -9.51189 -9.08960 -8.76854 -8.28237 -6.54564 -6.24617 -3.95972 -0.03140 0.25760 2.27728 2.31104 2.87579 2.91502 3.01759 3.08942 3.21302 3.23755 3.27104 3.53684 3.89684 3.93286 4.13923 4.17062 4.24257 4.55492 4.57923 4.79288 4.95143 4.97948 5.00112 5.05791 5.10511 5.11459 5.26144 5.33032 5.47847 5.59196 5.66216 5.68917 5.81860 5.84964 5.91101 6.06778 6.44334 6.89897 6.95260 7.33557 7.56092 7.62556 8.31638 8.40156 9.20528 10.82709 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.026033 B = 0.001703 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.310815 B =16439.223720 C =16759.960230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.108 3.892 4 C 0.101 3.899 5 N -0.714 5.714 6 C 0.558 3.442 7 O -0.517 6.517 8 C -0.055 4.055 9 C -0.155 4.155 10 C 0.138 3.862 11 N -0.500 5.500 12 C 0.309 3.691 13 F -0.106 7.106 14 C -0.137 4.137 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.151 4.151 18 S -0.061 6.061 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.402 0.598 35 H 0.150 0.850 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 27.638 -0.102 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.016 4.016 4 C -0.023 4.023 5 N -0.367 5.367 6 C 0.343 3.657 7 O -0.393 6.393 8 C -0.066 4.066 9 C -0.175 4.175 10 C -0.019 4.019 11 N -0.215 5.215 12 C 0.155 3.845 13 F -0.085 7.085 14 C -0.159 4.159 15 C 0.322 3.678 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.168 0.832 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.570 27.855 0.718 27.871 hybrid contribution -2.484 -1.309 -0.175 2.813 sum -3.054 26.547 0.542 26.727 Atomic orbital electron populations 1.21825 0.79124 1.03424 1.02027 1.47743 1.07016 1.05052 1.76139 1.21423 0.99062 0.86057 0.95060 1.21897 0.97117 0.84613 0.98708 1.45682 1.58237 1.24532 1.08258 1.17978 0.79556 0.83979 0.84231 1.90848 1.53467 1.63981 1.30976 1.20235 0.97757 0.95219 0.93419 1.22418 0.99526 0.97014 0.98563 1.22558 0.92797 0.91870 0.94659 1.66913 1.20871 1.35685 0.98070 1.17992 0.95124 0.89288 0.82047 1.91668 1.89792 1.82650 1.44389 1.21980 0.98624 0.94391 1.00953 1.20447 0.87981 0.84587 0.74826 1.90708 1.13702 1.86704 1.47316 1.23562 1.04638 0.97034 1.04877 1.85409 1.07957 0.93336 1.96730 1.22809 0.94255 0.92175 1.59232 0.90945 1.24994 0.95689 0.98387 0.94478 1.70004 1.11760 1.21820 1.46645 0.86222 0.80174 0.80282 0.78805 1.19928 1.20794 1.19919 0.92410 0.90340 0.91292 0.90082 0.88999 0.90055 0.90819 0.76293 0.83218 0.80638 0.81976 0.89074 0.89107 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.24 59.85 0.61 1.30 16 2 N -0.62 -7.55 2.87 -181.57 -0.52 -8.07 16 3 C 0.11 0.99 5.52 -4.05 -0.02 0.97 16 4 C 0.10 1.00 6.00 -4.05 -0.02 0.98 16 5 N -0.71 -5.46 5.51 -61.15 -0.34 -5.80 16 6 C 0.56 5.54 7.80 -12.19 -0.10 5.44 16 7 O -0.52 -7.32 16.44 5.36 0.09 -7.23 16 8 C -0.06 -0.42 5.91 -104.66 -0.62 -1.04 16 9 C -0.15 -0.71 9.61 -39.03 -0.38 -1.09 16 10 C 0.14 0.71 11.17 -17.61 -0.20 0.51 16 11 N -0.50 -4.25 10.35 -13.65 -0.14 -4.39 16 12 C 0.31 2.76 8.41 -17.39 -0.15 2.62 16 13 F -0.11 -1.02 17.29 2.25 0.04 -0.98 16 14 C -0.14 -1.16 9.66 -38.93 -0.38 -1.54 16 15 C 0.53 9.38 7.69 -10.98 -0.08 9.29 16 16 O -0.51 -10.90 15.44 5.56 0.09 -10.81 16 17 C -0.15 -2.91 4.71 36.01 0.17 -2.74 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 20 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 29 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 31 H 0.09 0.95 7.42 -51.93 -0.39 0.57 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.40 1.63 6.61 -40.82 -0.27 1.36 16 35 H 0.15 0.17 6.53 -52.49 -0.34 -0.17 16 36 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 37 H 0.16 1.35 7.74 -52.49 -0.41 0.94 16 38 H 0.09 1.63 7.40 -51.91 -0.38 1.25 16 39 H 0.09 1.61 8.11 -51.92 -0.42 1.19 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -37.69 369.28 -7.30 -44.99 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.62 Total: -2.37 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.96 Total: 1.98 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.27 Total: -43.39 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.17 Total: -18.05 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.69 -7.30 -44.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704191663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.889 kcal (2) G-P(sol) polarization free energy of solvation -37.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds