Wall clock time and date at job start Tue Mar 31 2020 23:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99903 * 2 1 4 4 C 1.52993 * 109.47514 * 270.00415 * 3 2 1 5 5 N 1.46496 * 109.47526 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00325 * 180.02562 * 5 4 3 7 7 O 1.21532 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.47996 * 120.00032 * 180.02562 * 6 5 4 9 9 N 1.32808 * 119.75202 * 359.97438 * 8 6 5 10 10 C 1.31432 * 121.66822 * 179.97438 * 9 8 6 11 11 C 1.38685 * 120.98048 * 0.02562 * 10 9 8 12 12 C 1.38439 * 119.39355 * 0.25442 * 11 10 9 13 13 C 1.38969 * 118.46638 * 359.50238 * 12 11 10 14 14 F 1.35110 * 120.50272 * 180.24752 * 13 12 11 15 15 C 1.34773 * 120.00014 * 180.02562 * 2 1 3 16 16 O 1.21286 * 119.99528 * 180.02562 * 15 2 1 17 17 C 1.50698 * 120.00417 * 359.97438 * 15 2 1 18 18 S 1.80996 * 109.47481 * 180.02562 * 17 15 2 19 19 C 1.76196 * 100.00151 * 180.02562 * 18 17 15 20 20 H 1.08007 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.38792 * 120.00086 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00120 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00005 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.46875 * 90.00520 * 23 21 19 25 25 H 1.48508 * 109.46965 * 210.00277 * 23 21 19 26 26 H 1.48495 * 109.46914 * 330.00185 * 23 21 19 27 27 H 1.08997 * 109.47042 * 89.99975 * 1 2 3 28 28 H 1.08994 * 109.46732 * 209.99633 * 1 2 3 29 29 H 1.08995 * 109.46900 * 329.99770 * 1 2 3 30 30 H 1.09001 * 109.47168 * 149.99967 * 3 2 1 31 31 H 1.09007 * 109.46560 * 30.00643 * 3 2 1 32 32 H 1.09001 * 109.47269 * 59.99613 * 4 3 2 33 33 H 1.09006 * 109.46713 * 300.00030 * 4 3 2 34 34 H 0.97005 * 119.99294 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.51016 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.30062 * 179.97438 * 11 10 9 37 37 H 1.08003 * 120.77028 * 179.72462 * 12 11 10 38 38 H 1.09000 * 109.46913 * 300.00629 * 17 15 2 39 39 H 1.09000 * 109.46507 * 60.00119 * 17 15 2 40 40 H 0.97003 * 120.00002 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4424 5 7 3.1844 2.9796 -1.4424 6 6 3.5207 3.5636 -2.6095 7 8 3.2173 3.0373 -3.6621 8 6 4.2607 4.8453 -2.6095 9 7 4.5903 5.4160 -1.4564 10 6 5.2474 6.5533 -1.4124 11 6 5.6239 7.2058 -2.5768 12 6 5.2969 6.6514 -3.8025 13 6 4.6064 5.4455 -3.8210 14 9 4.2708 4.8653 -4.9941 15 6 2.1389 -1.1672 -0.0005 16 8 3.3518 -1.1671 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4417 -5.2082 -0.0013 20 1 0.3763 -5.0305 -0.0012 21 6 1.9284 -6.5080 -0.0010 22 7 1.0917 -7.5241 -0.0021 23 14 3.7710 -6.8153 -0.0004 24 1 4.2588 -6.8966 1.3997 25 1 4.0600 -8.0929 -0.7003 26 1 4.4589 -5.7009 -0.7004 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.1500 1.1385 0.5138 31 1 1.6084 2.0284 0.5140 32 1 1.5001 1.8409 -1.9562 33 1 3.0416 0.9509 -1.9563 34 1 3.4263 3.3999 -0.6023 35 1 5.4980 6.9863 -0.4552 36 1 6.1633 8.1402 -2.5279 37 1 5.5751 7.1428 -4.7231 38 1 0.7591 -2.5302 0.8896 39 1 0.7586 -2.5298 -0.8903 40 1 1.4319 -8.4326 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704243658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:37 Heat of formation + Delta-G solvation = -69.016718 kcal Electronic energy + Delta-G solvation = -25673.214348 eV Core-core repulsion = 21529.459766 eV Total energy + Delta-G solvation = -4143.754582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.37487 -40.95063 -39.78974 -39.18715 -36.08453 -34.72992 -33.28019 -32.43036 -31.75309 -30.64876 -28.47311 -26.65221 -25.64075 -25.30081 -24.11223 -23.02511 -21.26895 -19.51802 -18.57355 -18.11663 -17.70168 -17.66971 -16.83129 -16.50853 -16.34451 -16.08296 -15.56647 -15.35285 -15.29034 -14.93318 -14.58180 -14.20918 -14.11018 -13.81279 -13.73831 -13.53342 -13.31444 -13.09564 -13.00732 -12.78376 -12.47990 -12.36623 -11.96048 -11.52701 -11.24636 -10.99918 -10.81344 -10.61891 -10.59756 -10.17702 -9.85304 -9.64615 -9.54825 -9.30325 -8.99630 -8.75468 -8.48855 -6.91581 -6.28135 -4.00028 -0.08172 0.38023 2.27604 2.41348 2.80242 2.89769 3.18703 3.20656 3.33938 3.45737 3.51982 3.56204 3.62508 4.00752 4.16700 4.19268 4.33903 4.54444 4.66030 4.71166 4.80059 4.99477 5.02419 5.10929 5.13271 5.18354 5.23714 5.24949 5.37191 5.62700 5.69641 5.76267 5.79715 5.87607 6.00244 6.04827 6.46827 6.90212 7.20999 7.33522 7.83457 7.94820 8.36500 8.42142 9.18079 10.80984 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.001938 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.969468 B =14445.574135 C =14828.461900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.109 3.891 4 C 0.101 3.899 5 N -0.704 5.704 6 C 0.567 3.433 7 O -0.516 6.516 8 C 0.048 3.952 9 N -0.432 5.432 10 C 0.088 3.912 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.112 3.888 14 F -0.103 7.103 15 C 0.532 3.468 16 O -0.513 6.513 17 C -0.121 4.121 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 34.285 -1.910 34.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.357 5.357 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.356 5.356 6 C 0.351 3.649 7 O -0.391 6.391 8 C -0.092 4.092 9 N -0.143 5.143 10 C -0.073 4.073 11 C -0.139 4.139 12 C -0.145 4.145 13 C 0.089 3.911 14 F -0.081 7.081 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.271 4.271 18 S 0.083 5.917 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.190 0.810 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.659 33.171 -1.947 33.707 hybrid contribution -0.522 0.229 -0.594 0.823 sum 5.137 33.400 -2.541 33.888 Atomic orbital electron populations 1.21869 0.78959 1.03511 1.02222 1.47703 1.07114 1.05080 1.75771 1.21462 0.99040 0.85690 0.95292 1.21858 0.97104 0.84889 0.98474 1.45585 1.57414 1.23858 1.08752 1.17617 0.79571 0.83272 0.84444 1.90897 1.53727 1.63488 1.30954 1.21379 1.01864 0.97400 0.88511 1.67625 1.09609 1.10360 1.26692 1.22944 0.94378 0.90578 0.99357 1.22351 0.98355 1.01162 0.92030 1.21772 0.97904 0.93960 1.00850 1.18684 0.97325 0.92824 0.82253 1.91654 1.89403 1.83254 1.43810 1.20391 0.87966 0.84650 0.75020 1.90708 1.13677 1.86760 1.47565 1.23313 1.03112 0.94968 1.05740 1.84807 1.11926 0.97538 1.97419 1.22301 0.94860 0.90872 1.58795 0.89360 1.24711 0.98538 0.94881 0.93177 1.69940 1.34781 0.98869 1.48057 0.86737 0.85376 0.79852 0.79907 1.19219 1.19939 1.15909 0.92380 0.90234 0.91091 0.89014 0.89941 0.90911 0.90296 0.75314 0.80996 0.82980 0.82616 0.88393 0.88337 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.29 59.85 0.62 1.34 16 2 N -0.62 -7.97 2.87 -181.57 -0.52 -8.49 16 3 C 0.11 1.16 5.56 -4.04 -0.02 1.13 16 4 C 0.10 1.19 6.00 -4.05 -0.02 1.17 16 5 N -0.70 -7.50 5.54 -61.21 -0.34 -7.84 16 6 C 0.57 7.27 7.81 -12.26 -0.10 7.17 16 7 O -0.52 -8.52 15.32 5.34 0.08 -8.43 16 8 C 0.05 0.49 6.75 -82.96 -0.56 -0.07 16 9 N -0.43 -3.44 9.54 -9.76 -0.09 -3.54 16 10 C 0.09 0.41 11.18 -17.56 -0.20 0.21 16 11 C -0.12 -0.40 10.11 -39.34 -0.40 -0.80 16 12 C -0.12 -0.64 10.16 -39.24 -0.40 -1.04 16 13 C 0.11 1.06 7.32 -38.82 -0.28 0.78 16 14 F -0.10 -1.24 15.55 2.25 0.04 -1.20 16 15 C 0.53 9.48 7.69 -10.99 -0.08 9.39 16 16 O -0.51 -10.99 15.44 5.55 0.09 -10.91 16 17 C -0.12 -2.34 4.71 36.00 0.17 -2.17 16 18 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 20 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.62 13.97 55.49 0.78 -25.85 16 23 Si 0.86 21.96 27.74 -169.99 -4.71 17.24 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 29 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 30 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 31 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.41 3.43 7.80 -40.82 -0.32 3.11 16 35 H 0.17 0.23 8.06 -52.49 -0.42 -0.19 16 36 H 0.15 -0.01 8.06 -52.49 -0.42 -0.44 16 37 H 0.16 0.44 8.06 -52.48 -0.42 0.02 16 38 H 0.10 1.74 7.40 -51.92 -0.38 1.36 16 39 H 0.10 1.80 8.11 -51.92 -0.42 1.38 16 40 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -38.02 366.48 -7.00 -45.02 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.78 Total: -0.99 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.06 Total: 5.11 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.18 Total: -45.71 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.17 Total: -19.34 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.02 -7.00 -45.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704243658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.996 kcal (2) G-P(sol) polarization free energy of solvation -38.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds