Wall clock time and date at job start Tue Mar 31 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46506 * 119.99903 * 2 1 4 4 C 1.52993 * 109.47514 * 270.00415 * 3 2 1 5 5 N 1.46496 * 109.47526 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00325 * 180.02562 * 5 4 3 7 7 O 1.21532 * 120.00250 * 359.97438 * 6 5 4 8 8 C 1.47996 * 120.00032 * 180.02562 * 6 5 4 9 9 N 1.32808 * 119.75202 * 359.97438 * 8 6 5 10 10 C 1.31432 * 121.66822 * 179.97438 * 9 8 6 11 11 C 1.38685 * 120.98048 * 0.02562 * 10 9 8 12 12 C 1.38439 * 119.39355 * 0.25442 * 11 10 9 13 13 C 1.38969 * 118.46638 * 359.50238 * 12 11 10 14 14 F 1.35110 * 120.50272 * 180.24752 * 13 12 11 15 15 C 1.34773 * 120.00014 * 180.02562 * 2 1 3 16 16 O 1.21286 * 119.99528 * 180.02562 * 15 2 1 17 17 C 1.50698 * 120.00417 * 359.97438 * 15 2 1 18 18 S 1.80996 * 109.47481 * 180.02562 * 17 15 2 19 19 C 1.76196 * 100.00151 * 180.02562 * 18 17 15 20 20 H 1.08007 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.38792 * 120.00086 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00120 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00005 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.46875 * 90.00520 * 23 21 19 25 25 H 1.48508 * 109.46965 * 210.00277 * 23 21 19 26 26 H 1.48495 * 109.46914 * 330.00185 * 23 21 19 27 27 H 1.08997 * 109.47042 * 89.99975 * 1 2 3 28 28 H 1.08994 * 109.46732 * 209.99633 * 1 2 3 29 29 H 1.08995 * 109.46900 * 329.99770 * 1 2 3 30 30 H 1.09001 * 109.47168 * 149.99967 * 3 2 1 31 31 H 1.09007 * 109.46560 * 30.00643 * 3 2 1 32 32 H 1.09001 * 109.47269 * 59.99613 * 4 3 2 33 33 H 1.09006 * 109.46713 * 300.00030 * 4 3 2 34 34 H 0.97005 * 119.99294 * 359.97438 * 5 4 3 35 35 H 1.08002 * 119.51016 * 180.02562 * 10 9 8 36 36 H 1.08002 * 120.30062 * 179.97438 * 11 10 9 37 37 H 1.08003 * 120.77028 * 179.72462 * 12 11 10 38 38 H 1.09000 * 109.46913 * 300.00629 * 17 15 2 39 39 H 1.09000 * 109.46507 * 60.00119 * 17 15 2 40 40 H 0.97003 * 120.00002 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4424 5 7 3.1844 2.9796 -1.4424 6 6 3.5207 3.5636 -2.6095 7 8 3.2173 3.0373 -3.6621 8 6 4.2607 4.8453 -2.6095 9 7 4.5903 5.4160 -1.4564 10 6 5.2474 6.5533 -1.4124 11 6 5.6239 7.2058 -2.5768 12 6 5.2969 6.6514 -3.8025 13 6 4.6064 5.4455 -3.8210 14 9 4.2708 4.8653 -4.9941 15 6 2.1389 -1.1672 -0.0005 16 8 3.3518 -1.1671 -0.0001 17 6 1.3855 -2.4723 -0.0005 18 16 2.5617 -3.8480 -0.0005 19 6 1.4417 -5.2082 -0.0013 20 1 0.3763 -5.0305 -0.0012 21 6 1.9284 -6.5080 -0.0010 22 7 1.0917 -7.5241 -0.0021 23 14 3.7710 -6.8153 -0.0004 24 1 4.2588 -6.8966 1.3997 25 1 4.0600 -8.0929 -0.7003 26 1 4.4589 -5.7009 -0.7004 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.1500 1.1385 0.5138 31 1 1.6084 2.0284 0.5140 32 1 1.5001 1.8409 -1.9562 33 1 3.0416 0.9509 -1.9563 34 1 3.4263 3.3999 -0.6023 35 1 5.4980 6.9863 -0.4552 36 1 6.1633 8.1402 -2.5279 37 1 5.5751 7.1428 -4.7231 38 1 0.7591 -2.5302 0.8896 39 1 0.7586 -2.5298 -0.8903 40 1 1.4319 -8.4326 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704243658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:36 Heat of formation + Delta-G solvation = -98.113406 kcal Electronic energy + Delta-G solvation = -25674.476075 eV Core-core repulsion = 21529.459766 eV Total energy + Delta-G solvation = -4145.016309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.100 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.10831 -41.61861 -40.97391 -40.09736 -37.25139 -35.79305 -34.68038 -33.77866 -32.40498 -31.76131 -29.67190 -27.87234 -27.55165 -26.01979 -24.66973 -23.91099 -22.14217 -20.81116 -19.67368 -19.31108 -18.74586 -18.26458 -18.16386 -17.48420 -17.22062 -17.12745 -16.87557 -16.64632 -16.35111 -16.26633 -15.67379 -15.19468 -15.05790 -14.92926 -14.90839 -14.42960 -14.38701 -14.23364 -14.17001 -13.64566 -13.52170 -13.38364 -13.25173 -13.12291 -13.01151 -12.72578 -12.37035 -11.88359 -11.65931 -11.18046 -11.04969 -11.03044 -10.79059 -10.53828 -10.42118 -10.08358 -9.85758 -9.01686 -8.52503 -6.23503 -0.64511 -0.05486 0.95198 1.29746 1.38375 1.46728 1.51270 1.52282 1.73841 2.21065 2.24673 2.59930 2.67407 2.85618 2.87116 3.01524 3.53811 3.58120 3.61858 3.77453 3.86655 3.95211 4.14461 4.24864 4.32697 4.37773 4.44659 4.54047 4.66091 4.68585 4.78591 4.83529 4.90920 4.95883 5.12471 5.46027 5.47521 5.69907 6.10356 6.14741 6.20225 6.57340 6.92723 6.95186 7.02586 8.59715 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.001938 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.969468 B =14445.574135 C =14828.461900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.607 5.607 3 C 0.114 3.886 4 C 0.110 3.890 5 N -0.691 5.691 6 C 0.560 3.440 7 O -0.567 6.567 8 C 0.018 3.982 9 N -0.446 5.446 10 C 0.090 3.910 11 C -0.092 4.092 12 C -0.114 4.114 13 C 0.081 3.919 14 F -0.130 7.130 15 C 0.531 3.469 16 O -0.558 6.558 17 C -0.106 4.106 18 S -0.181 6.181 19 C -0.527 4.527 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.260 1.260 25 H -0.259 1.259 26 H -0.240 1.240 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.423 0.577 35 H 0.212 0.788 36 H 0.201 0.799 37 H 0.182 0.818 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 38.211 -0.545 38.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.340 5.340 3 C -0.009 4.009 4 C -0.015 4.015 5 N -0.343 5.343 6 C 0.345 3.655 7 O -0.446 6.446 8 C -0.119 4.119 9 N -0.157 5.157 10 C -0.071 4.071 11 C -0.112 4.112 12 C -0.140 4.140 13 C 0.058 3.942 14 F -0.108 7.108 15 C 0.319 3.681 16 O -0.436 6.436 17 C -0.257 4.257 18 S 0.046 5.954 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.185 1.185 25 H -0.183 1.183 26 H -0.164 1.164 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.262 0.738 35 H 0.229 0.771 36 H 0.218 0.782 37 H 0.199 0.801 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.444 37.131 -0.551 37.690 hybrid contribution -0.841 -0.714 -0.963 1.465 sum 5.603 36.416 -1.514 36.876 Atomic orbital electron populations 1.22206 0.76320 1.05475 1.03431 1.47686 1.08712 1.04250 1.73395 1.21622 0.99358 0.85429 0.94511 1.21661 0.96502 0.84418 0.98963 1.45462 1.56724 1.23151 1.08981 1.18172 0.79133 0.84153 0.84018 1.90851 1.55947 1.65188 1.32611 1.20991 1.03919 0.97107 0.89849 1.67603 1.10673 1.11917 1.25515 1.23754 0.92469 0.89199 1.01674 1.22914 0.96054 1.01834 0.90371 1.22166 0.96542 0.92231 1.03102 1.19158 0.99209 0.94619 0.81228 1.91578 1.90035 1.84064 1.45139 1.20113 0.87308 0.85481 0.75241 1.90692 1.15356 1.87414 1.50164 1.23289 1.01742 0.93390 1.07253 1.84748 1.13957 0.99119 1.97577 1.22435 0.94388 0.92410 1.58242 0.91793 1.25545 1.02665 0.94804 0.92934 1.70014 1.36691 0.99503 1.49108 0.85881 0.80331 0.79985 0.80264 1.18491 1.18348 1.16391 0.91543 0.90313 0.87198 0.90175 0.85145 0.90562 0.94454 0.73816 0.77150 0.78224 0.80077 0.86480 0.87193 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.29 127.77 1.31 2.37 16 2 N -0.61 -14.58 2.87 -846.76 -2.43 -17.01 16 3 C 0.11 2.22 5.56 86.38 0.48 2.70 16 4 C 0.11 2.61 6.00 86.38 0.52 3.13 16 5 N -0.69 -14.90 5.54 -465.84 -2.58 -17.49 16 6 C 0.56 15.15 7.81 86.83 0.68 15.83 16 7 O -0.57 -20.31 15.32 -3.82 -0.06 -20.37 16 8 C 0.02 0.38 6.75 41.90 0.28 0.66 16 9 N -0.45 -6.36 9.54 -184.79 -1.76 -8.12 16 10 C 0.09 0.49 11.18 84.86 0.95 1.44 16 11 C -0.09 -0.20 10.11 22.42 0.23 0.02 16 12 C -0.11 -0.95 10.16 22.49 0.23 -0.73 16 13 C 0.08 1.55 7.32 22.76 0.17 1.72 16 14 F -0.13 -3.37 15.55 44.97 0.70 -2.67 16 15 C 0.53 18.76 7.69 87.66 0.67 19.43 16 16 O -0.56 -24.33 15.44 -3.05 -0.05 -24.38 16 17 C -0.11 -4.08 4.71 71.24 0.34 -3.74 16 18 S -0.18 -9.32 18.55 -56.49 -1.05 -10.37 16 19 C -0.53 -31.04 10.04 67.95 0.68 -30.36 16 20 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 21 C 0.05 2.73 5.50 84.85 0.47 3.20 16 22 N -0.92 -56.17 13.97 21.65 0.30 -55.86 16 23 Si 0.91 45.80 27.74 68.60 1.90 47.70 16 24 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 26 H -0.24 -12.13 6.74 99.48 0.67 -11.46 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.30 6.44 -2.39 -0.02 1.28 16 29 H 0.11 0.95 7.89 -2.39 -0.02 0.93 16 30 H 0.08 1.83 7.42 -2.39 -0.02 1.81 16 31 H 0.13 1.37 7.89 -2.38 -0.02 1.35 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.42 6.73 7.80 -92.70 -0.72 6.01 16 35 H 0.21 -0.58 8.06 -2.91 -0.02 -0.60 16 36 H 0.20 -1.40 8.06 -2.91 -0.02 -1.43 16 37 H 0.18 0.49 8.06 -2.91 -0.02 0.46 16 38 H 0.12 4.05 7.40 -2.40 -0.02 4.03 16 39 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 40 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -89.53 366.48 2.31 -87.22 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.33 Total: 5.67 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 7.00 Total: 15.68 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -6.48 Total: -98.48 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.11 Total: -44.74 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.70 Total: -2.67 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.37 kcal Total: -89.53 2.31 -87.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704243658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.889 kcal (2) G-P(sol) polarization free energy of solvation -89.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds