Wall clock time and date at job start Tue Mar 31 2020 23:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47537 * 2 1 4 4 C 1.52995 * 109.47641 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47221 * 59.99697 * 4 3 2 6 6 N 1.46503 * 109.47220 * 179.97438 * 4 3 2 7 7 S 1.65606 * 119.99826 * 185.97219 * 6 4 3 8 8 O 1.42101 * 106.39615 * 51.52983 * 7 6 4 9 9 O 1.42098 * 106.40006 * 184.44719 * 7 6 4 10 10 C 1.76194 * 107.21876 * 297.99089 * 7 6 4 11 11 C 1.38639 * 119.74778 * 275.66854 * 10 7 6 12 12 C 1.37618 * 120.24797 * 179.71999 * 11 10 7 13 13 C 1.40716 * 119.74329 * 0.57466 * 12 11 10 14 14 C 1.41398 * 120.24438 * 179.67738 * 13 12 11 15 15 H 1.07999 * 119.99943 * 209.22223 * 14 13 12 16 16 C 1.39937 * 119.99873 * 29.22117 * 14 13 12 17 17 N 1.30826 * 120.00455 * 10.02410 * 16 14 13 18 18 Si 1.86803 * 119.99943 * 190.02378 * 16 14 13 19 19 H 1.48499 * 109.47240 * 90.00316 * 18 16 14 20 20 H 1.48504 * 109.47039 * 209.99811 * 18 16 14 21 21 H 1.48494 * 109.47289 * 329.99876 * 18 16 14 22 22 C 1.40718 * 119.51248 * 359.70291 * 13 12 11 23 23 C 1.37613 * 119.74466 * 359.97438 * 22 13 12 24 24 C 1.50706 * 109.46994 * 299.99734 * 4 3 2 25 25 O 1.20832 * 119.99732 * 94.99792 * 24 4 3 26 26 O 1.34221 * 120.00144 * 275.00245 * 24 4 3 27 27 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47156 * 299.99908 * 1 2 3 29 29 H 1.09000 * 109.47127 * 59.99874 * 1 2 3 30 30 H 1.08998 * 109.46769 * 239.99932 * 2 1 3 31 31 H 1.09000 * 109.47127 * 120.00126 * 2 1 3 32 32 H 1.09000 * 109.46965 * 59.99406 * 3 2 1 33 33 H 1.09009 * 109.46703 * 300.00714 * 3 2 1 34 34 H 1.08998 * 109.46824 * 67.43224 * 5 4 3 35 35 H 1.09000 * 109.47078 * 187.43478 * 5 4 3 36 36 H 1.09004 * 109.46722 * 307.43275 * 5 4 3 37 37 H 0.96995 * 119.99981 * 5.97472 * 6 4 3 38 38 H 1.08000 * 119.87692 * 359.97438 * 11 10 7 39 39 H 1.08000 * 120.13117 * 180.27547 * 12 11 10 40 40 H 0.96993 * 120.00146 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.12915 * 179.97438 * 22 13 12 42 42 H 1.07999 * 119.87521 * 180.02562 * 23 22 13 43 43 H 0.96703 * 117.00233 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0796 0.7213 -1.2502 6 7 4.0584 2.8237 -0.0013 7 16 5.6792 3.1288 -0.1513 8 8 6.1193 2.4064 -1.2930 9 8 5.8374 4.5341 -0.0121 10 6 6.4783 2.3979 1.2386 11 6 6.5501 3.0940 2.4354 12 6 7.1668 2.5306 3.5291 13 6 7.7363 1.2480 3.4257 14 6 8.3785 0.6619 4.5408 15 1 9.1861 -0.0395 4.3917 16 6 7.9676 0.9907 5.8374 17 7 6.8717 1.6813 6.0211 18 14 8.9840 0.4437 7.3062 19 1 9.9907 1.4870 7.6278 20 1 8.0927 0.2387 8.4762 21 1 9.6766 -0.8293 6.9824 22 6 7.6626 0.5532 2.2042 23 6 7.0351 1.1334 1.1256 24 6 4.0729 0.7319 1.2296 25 8 4.3602 -0.4405 1.1750 26 8 4.2015 1.4013 2.3858 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.8284 1.3063 -2.1350 35 1 5.1614 0.6048 -1.1866 36 1 3.6117 -0.2608 -1.3190 37 1 3.4324 3.5594 0.0862 38 1 6.1168 4.0804 2.5109 39 1 7.2177 3.0727 4.4618 40 1 6.5872 1.9095 6.9199 41 1 8.0967 -0.4316 2.1136 42 1 6.9770 0.6018 0.1872 43 1 4.5275 0.9030 3.1477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092130708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:39 Heat of formation + Delta-G solvation = -156.739119 kcal Electronic energy + Delta-G solvation = -29666.119166 eV Core-core repulsion = 25609.728209 eV Total energy + Delta-G solvation = -4056.390957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.33684 -37.63362 -37.09672 -36.45926 -35.50183 -35.20793 -34.01326 -33.74329 -30.25608 -29.76023 -29.46878 -26.93984 -25.84827 -24.37685 -22.10744 -21.47519 -21.16234 -19.77018 -18.86676 -17.70829 -17.62548 -17.26315 -16.74118 -16.66277 -15.56525 -15.40265 -15.26366 -14.69879 -14.19896 -14.07772 -13.73028 -13.45163 -13.32606 -13.19995 -12.80534 -12.45527 -12.38274 -12.24007 -12.09751 -11.94230 -11.82036 -11.76896 -11.48700 -11.34279 -11.32735 -11.24793 -11.14544 -10.96198 -10.80175 -10.64473 -10.57407 -10.40360 -10.35224 -9.76494 -9.64051 -9.56816 -9.18857 -7.91059 -7.69491 -7.09625 -4.82305 1.14841 2.20885 2.54634 2.88192 2.89712 2.92566 2.95027 3.36623 3.55878 3.67511 4.22267 4.43032 4.56216 4.71352 4.84107 5.00214 5.13418 5.26482 5.36550 5.49432 5.52926 5.55412 5.60772 5.75737 5.90055 5.91935 6.03370 6.08114 6.09440 6.14303 6.24402 6.53638 6.68832 6.71105 6.90819 7.01024 7.07030 7.15700 7.33925 7.40837 7.62307 7.77107 7.97628 8.32442 8.38379 8.51587 8.62778 9.80708 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.004396 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.428365 B = 6367.837593 C = 7422.365592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C -0.114 4.114 4 C 0.200 3.800 5 C -0.169 4.169 6 N -1.110 6.110 7 S 2.684 3.316 8 O -0.979 6.979 9 O -0.980 6.980 10 C -0.777 4.777 11 C 0.003 3.997 12 C -0.179 4.179 13 C 0.141 3.859 14 C -0.438 4.438 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.777 5.777 18 Si 0.918 3.082 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.228 4.228 23 C -0.004 4.004 24 C 0.467 3.533 25 O -0.506 6.506 26 O -0.491 6.491 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.415 0.585 38 H 0.100 0.900 39 H 0.124 0.876 40 H 0.287 0.713 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 -0.719 -5.588 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.153 4.153 4 C 0.108 3.892 5 C -0.227 4.227 6 N -0.866 5.866 7 S 2.784 3.216 8 O -0.969 6.969 9 O -0.971 6.971 10 C -0.874 4.874 11 C -0.018 4.018 12 C -0.199 4.199 13 C 0.138 3.862 14 C -0.466 4.466 15 H 0.103 0.897 16 C -0.149 4.149 17 N -0.400 5.400 18 Si 0.742 3.258 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.249 4.249 23 C -0.024 4.024 24 C 0.307 3.693 25 O -0.393 6.393 26 O -0.302 6.302 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -10.195 -0.378 -6.493 12.093 hybrid contribution 0.362 -0.616 2.078 2.198 sum -9.833 -0.993 -4.415 10.824 Atomic orbital electron populations 1.21744 0.95348 1.01798 1.01789 1.21695 0.96157 0.95663 1.03556 1.21856 0.90422 0.98787 1.04228 1.19945 0.96613 0.81551 0.91046 1.22555 1.04858 1.00763 0.94540 1.55880 1.27578 1.11437 1.91707 1.01515 0.71905 0.73228 0.74936 1.93492 1.80335 1.73826 1.49282 1.93508 1.84894 1.30696 1.87977 1.29060 1.30700 1.10301 1.17298 1.20142 0.94270 0.96166 0.91190 1.21341 1.05010 0.95831 0.97747 1.17864 0.86760 0.90215 0.91394 1.19922 1.15155 1.21416 0.90146 0.89693 1.26057 0.94489 0.93134 1.01190 1.69759 1.18064 1.27135 1.25085 0.86125 0.80134 0.80315 0.79235 1.18953 1.19924 1.18339 1.21081 1.09234 0.99790 0.94804 1.20202 0.93478 0.91785 0.96971 1.23626 0.74382 0.85918 0.85412 1.90693 1.45810 1.17388 1.85390 1.84502 1.78016 1.47212 1.20490 0.92559 0.92716 0.92634 0.90688 0.91349 0.90158 0.89470 0.90281 0.88883 0.90163 0.75107 0.88165 0.85823 0.90176 0.88358 0.87959 0.72663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.38 5.29 -26.73 -0.14 -1.52 16 3 C -0.11 -1.21 4.38 -26.74 -0.12 -1.33 16 4 C 0.20 2.82 0.89 -132.97 -0.12 2.70 16 5 C -0.17 -2.41 6.74 37.16 0.25 -2.16 16 6 N -1.11 -16.13 5.31 -0.40 0.00 -16.14 16 7 S 2.68 50.44 5.64 -107.50 -0.61 49.84 16 8 O -0.98 -19.63 13.82 -57.17 -0.79 -20.42 16 9 O -0.98 -20.55 17.42 -57.17 -1.00 -21.55 16 10 C -0.78 -16.38 3.48 -39.29 -0.14 -16.52 16 11 C 0.00 0.06 8.50 -39.66 -0.34 -0.28 16 12 C -0.18 -4.21 8.66 -38.87 -0.34 -4.55 16 13 C 0.14 3.41 5.55 -106.82 -0.59 2.82 16 14 C -0.44 -10.48 9.06 -37.74 -0.34 -10.82 16 15 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 16 C 0.07 1.60 5.26 -17.34 -0.09 1.51 16 17 N -0.78 -17.59 10.83 55.55 0.60 -16.98 16 18 Si 0.92 16.93 29.57 -169.99 -5.03 11.90 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 21 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 22 C -0.23 -5.29 9.80 -38.87 -0.38 -5.67 16 23 C 0.00 -0.09 7.77 -39.66 -0.31 -0.40 16 24 C 0.47 7.87 3.46 36.01 0.12 8.00 16 25 O -0.51 -9.62 16.13 -18.76 -0.30 -9.92 16 26 O -0.49 -8.46 10.55 -39.23 -0.41 -8.88 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.75 6.27 -51.93 -0.33 0.43 16 31 H 0.07 0.84 6.83 -51.93 -0.35 0.49 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.58 5.61 -51.93 -0.29 1.29 16 36 H 0.08 1.01 6.02 -51.93 -0.31 0.70 16 37 H 0.42 4.85 8.61 -34.48 -0.30 4.55 16 38 H 0.10 2.07 7.73 -52.49 -0.41 1.67 16 39 H 0.12 3.00 6.23 -52.49 -0.33 2.67 16 40 H 0.29 5.91 8.30 -40.82 -0.34 5.57 16 41 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 42 H 0.10 2.16 7.01 -52.49 -0.37 1.79 16 43 H 0.41 7.24 9.10 45.56 0.41 7.66 16 LS Contribution 355.81 15.07 5.36 5.36 Total: -1.00 -28.74 355.81 -9.10 -37.84 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -4.77 Total: 18.02 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -2.16 Total: -29.08 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.60 Total: -33.12 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -2.50 Total: -60.76 kcal Atomic # 14 Polarization: 16.93 SS G_CDS: -5.03 Total: 11.90 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.61 Total: 49.84 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.74 -9.10 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.894 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds