Wall clock time and date at job start Tue Mar 31 2020 23:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47537 * 2 1 4 4 C 1.52995 * 109.47641 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47221 * 59.99697 * 4 3 2 6 6 N 1.46503 * 109.47220 * 179.97438 * 4 3 2 7 7 S 1.65606 * 119.99826 * 185.97219 * 6 4 3 8 8 O 1.42101 * 106.39615 * 51.52983 * 7 6 4 9 9 O 1.42098 * 106.40006 * 184.44719 * 7 6 4 10 10 C 1.76194 * 107.21876 * 297.99089 * 7 6 4 11 11 C 1.38639 * 119.74778 * 275.66854 * 10 7 6 12 12 C 1.37618 * 120.24797 * 179.71999 * 11 10 7 13 13 C 1.40716 * 119.74329 * 0.57466 * 12 11 10 14 14 C 1.41398 * 120.24438 * 179.67738 * 13 12 11 15 15 H 1.07999 * 119.99943 * 209.22223 * 14 13 12 16 16 C 1.39937 * 119.99873 * 29.22117 * 14 13 12 17 17 N 1.30826 * 120.00455 * 10.02410 * 16 14 13 18 18 Si 1.86803 * 119.99943 * 190.02378 * 16 14 13 19 19 H 1.48499 * 109.47240 * 90.00316 * 18 16 14 20 20 H 1.48504 * 109.47039 * 209.99811 * 18 16 14 21 21 H 1.48494 * 109.47289 * 329.99876 * 18 16 14 22 22 C 1.40718 * 119.51248 * 359.70291 * 13 12 11 23 23 C 1.37613 * 119.74466 * 359.97438 * 22 13 12 24 24 C 1.50706 * 109.46994 * 299.99734 * 4 3 2 25 25 O 1.20832 * 119.99732 * 94.99792 * 24 4 3 26 26 O 1.34221 * 120.00144 * 275.00245 * 24 4 3 27 27 H 1.08998 * 109.47308 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47156 * 299.99908 * 1 2 3 29 29 H 1.09000 * 109.47127 * 59.99874 * 1 2 3 30 30 H 1.08998 * 109.46769 * 239.99932 * 2 1 3 31 31 H 1.09000 * 109.47127 * 120.00126 * 2 1 3 32 32 H 1.09000 * 109.46965 * 59.99406 * 3 2 1 33 33 H 1.09009 * 109.46703 * 300.00714 * 3 2 1 34 34 H 1.08998 * 109.46824 * 67.43224 * 5 4 3 35 35 H 1.09000 * 109.47078 * 187.43478 * 5 4 3 36 36 H 1.09004 * 109.46722 * 307.43275 * 5 4 3 37 37 H 0.96995 * 119.99981 * 5.97472 * 6 4 3 38 38 H 1.08000 * 119.87692 * 359.97438 * 11 10 7 39 39 H 1.08000 * 120.13117 * 180.27547 * 12 11 10 40 40 H 0.96993 * 120.00146 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.12915 * 179.97438 * 22 13 12 42 42 H 1.07999 * 119.87521 * 180.02562 * 23 22 13 43 43 H 0.96703 * 117.00233 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0796 0.7213 -1.2502 6 7 4.0584 2.8237 -0.0013 7 16 5.6792 3.1288 -0.1513 8 8 6.1193 2.4064 -1.2930 9 8 5.8374 4.5341 -0.0121 10 6 6.4783 2.3979 1.2386 11 6 6.5501 3.0940 2.4354 12 6 7.1668 2.5306 3.5291 13 6 7.7363 1.2480 3.4257 14 6 8.3785 0.6619 4.5408 15 1 9.1861 -0.0395 4.3917 16 6 7.9676 0.9907 5.8374 17 7 6.8717 1.6813 6.0211 18 14 8.9840 0.4437 7.3062 19 1 9.9907 1.4870 7.6278 20 1 8.0927 0.2387 8.4762 21 1 9.6766 -0.8293 6.9824 22 6 7.6626 0.5532 2.2042 23 6 7.0351 1.1334 1.1256 24 6 4.0729 0.7319 1.2296 25 8 4.3602 -0.4405 1.1750 26 8 4.2015 1.4013 2.3858 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.8284 1.3063 -2.1350 35 1 5.1614 0.6048 -1.1866 36 1 3.6117 -0.2608 -1.3190 37 1 3.4324 3.5594 0.0862 38 1 6.1168 4.0804 2.5109 39 1 7.2177 3.0727 4.4618 40 1 6.5872 1.9095 6.9199 41 1 8.0967 -0.4316 2.1136 42 1 6.9770 0.6018 0.1872 43 1 4.5275 0.9030 3.1477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092130708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:38 Heat of formation + Delta-G solvation = -175.919365 kcal Electronic energy + Delta-G solvation = -29666.950884 eV Core-core repulsion = 25609.728209 eV Total energy + Delta-G solvation = -4057.222675 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65306 -39.37995 -38.44384 -37.91299 -36.92149 -36.81702 -35.74119 -34.69906 -32.02633 -31.29848 -30.84885 -27.87376 -27.60590 -25.57299 -23.29326 -23.02039 -22.88743 -20.94271 -20.33522 -19.39442 -19.08541 -18.69397 -18.27730 -18.08820 -17.16742 -16.63648 -16.50759 -16.13584 -15.81775 -15.34063 -15.14366 -14.93732 -14.66519 -14.46003 -14.18207 -13.93522 -13.88346 -13.63804 -13.45153 -13.28630 -13.14922 -12.93072 -12.88529 -12.86894 -12.84826 -12.62160 -12.47427 -12.29934 -12.14595 -11.97503 -11.77281 -11.61106 -11.53084 -11.47651 -11.30516 -11.20901 -10.58223 -9.69364 -9.49808 -8.79139 -6.63503 -0.38487 0.48682 1.05229 1.24642 1.37183 1.42932 1.49538 2.07651 2.12920 2.13674 2.53556 2.88719 3.49144 3.52877 3.61070 3.67789 3.96586 4.15601 4.20066 4.27592 4.34639 4.43500 4.58760 4.74109 4.79567 4.86747 4.88878 4.93603 4.97056 5.07654 5.14840 5.20642 5.23939 5.29338 5.38986 5.48768 5.54908 5.60982 5.70944 5.79499 5.95687 6.07573 6.19685 6.52835 6.72752 6.82217 6.98825 8.13863 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.004396 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.428365 B = 6367.837593 C = 7422.365592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.110 4.110 4 C 0.200 3.800 5 C -0.173 4.173 6 N -1.092 6.092 7 S 2.711 3.289 8 O -0.988 6.988 9 O -0.998 6.998 10 C -0.782 4.782 11 C 0.004 3.996 12 C -0.192 4.192 13 C 0.123 3.877 14 C -0.472 4.472 15 H 0.082 0.918 16 C 0.039 3.961 17 N -0.798 5.798 18 Si 0.986 3.014 19 H -0.261 1.261 20 H -0.264 1.264 21 H -0.261 1.261 22 C -0.247 4.247 23 C -0.002 4.002 24 C 0.463 3.537 25 O -0.532 6.532 26 O -0.494 6.494 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.433 0.567 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.296 0.704 41 H 0.096 0.904 42 H 0.108 0.892 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.186 -0.143 -6.259 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.148 4.148 4 C 0.109 3.891 5 C -0.231 4.231 6 N -0.853 5.853 7 S 2.808 3.192 8 O -0.978 6.978 9 O -0.988 6.988 10 C -0.876 4.876 11 C -0.016 4.016 12 C -0.212 4.212 13 C 0.119 3.881 14 C -0.500 4.500 15 H 0.100 0.900 16 C -0.180 4.180 17 N -0.421 5.421 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.188 1.188 21 H -0.185 1.185 22 C -0.267 4.267 23 C -0.022 4.022 24 C 0.304 3.696 25 O -0.421 6.421 26 O -0.305 6.305 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.270 0.730 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.920 0.215 -7.149 13.901 hybrid contribution 0.808 -0.790 2.180 2.455 sum -11.111 -0.575 -4.969 12.186 Atomic orbital electron populations 1.21716 0.93519 1.02326 1.02714 1.21697 0.97717 0.95231 1.02498 1.21959 0.87157 0.99423 1.06284 1.20195 0.99046 0.80434 0.89404 1.22615 1.03070 1.02184 0.95267 1.55428 1.26180 1.12555 1.91124 1.00738 0.72535 0.72191 0.73745 1.93494 1.81229 1.73944 1.49117 1.93484 1.85711 1.31702 1.87933 1.29490 1.30456 1.09656 1.17975 1.20276 0.93675 0.96606 0.91071 1.21274 1.06151 0.95849 0.97948 1.18076 0.87373 0.90690 0.91941 1.20135 1.15982 1.22568 0.91313 0.90011 1.26781 0.95241 0.92911 1.03053 1.69781 1.18784 1.27310 1.26236 0.85120 0.78592 0.79670 0.75984 1.18611 1.18820 1.18451 1.21174 1.10200 1.00040 0.95312 1.20278 0.92968 0.92203 0.96763 1.24330 0.73578 0.85869 0.85833 1.90678 1.46961 1.18691 1.85731 1.84510 1.77949 1.47301 1.20699 0.92337 0.92580 0.90886 0.90312 0.93960 0.89341 0.86183 0.88059 0.91776 0.88751 0.72958 0.86930 0.86952 0.89288 0.88535 0.87417 0.73238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.13 -2.46 5.29 30.59 0.16 -2.30 16 3 C -0.11 -1.97 4.38 30.59 0.13 -1.83 16 4 C 0.20 5.23 0.89 2.86 0.00 5.23 16 5 C -0.17 -4.58 6.74 71.98 0.49 -4.10 16 6 N -1.09 -29.07 5.31 -155.17 -0.82 -29.89 16 7 S 2.71 97.93 5.64 -56.49 -0.32 97.61 16 8 O -0.99 -38.19 13.82 -128.00 -1.77 -39.95 16 9 O -1.00 -40.09 17.42 -128.00 -2.23 -42.32 16 10 C -0.78 -32.93 3.48 22.46 0.08 -32.85 16 11 C 0.00 0.17 8.50 22.22 0.19 0.35 16 12 C -0.19 -9.28 8.66 22.73 0.20 -9.09 16 13 C 0.12 6.14 5.55 -21.29 -0.12 6.02 16 14 C -0.47 -23.36 9.06 23.46 0.21 -23.15 16 15 H 0.08 3.94 7.87 -2.91 -0.02 3.92 16 16 C 0.04 1.75 5.26 85.25 0.45 2.20 16 17 N -0.80 -36.63 10.83 21.82 0.24 -36.40 16 18 Si 0.99 34.71 29.57 68.60 2.03 36.73 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 20 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 21 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 22 C -0.25 -11.85 9.80 22.73 0.22 -11.62 16 23 C 0.00 -0.10 7.77 22.22 0.17 0.08 16 24 C 0.46 15.42 3.46 71.24 0.25 15.67 16 25 O -0.53 -20.48 16.13 21.95 0.35 -20.13 16 26 O -0.49 -17.11 10.55 -51.33 -0.54 -17.65 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.38 6.27 -2.39 -0.01 1.37 16 31 H 0.04 1.00 6.83 -2.39 -0.02 0.99 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.11 5.61 -2.39 -0.01 2.09 16 36 H 0.09 2.21 6.02 -2.38 -0.01 2.19 16 37 H 0.43 8.64 8.61 -96.75 -0.83 7.81 16 38 H 0.11 4.61 7.73 -2.91 -0.02 4.59 16 39 H 0.11 5.63 6.23 -2.91 -0.02 5.61 16 40 H 0.30 12.21 8.30 -92.71 -0.77 11.44 16 41 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.11 4.62 7.01 -2.91 -0.02 4.60 16 43 H 0.41 14.91 9.10 -74.06 -0.67 14.24 16 Total: -1.00 -62.47 355.81 -0.36 -62.83 By element: Atomic # 1 Polarization: 46.29 SS G_CDS: -0.44 Total: 45.85 kcal Atomic # 6 Polarization: -59.83 SS G_CDS: 3.15 Total: -56.68 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.59 Total: -66.29 kcal Atomic # 8 Polarization: -115.87 SS G_CDS: -4.19 Total: -120.05 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.73 kcal Atomic # 16 Polarization: 97.93 SS G_CDS: -0.32 Total: 97.61 kcal Total: -62.47 -0.36 -62.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092130708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.091 kcal (2) G-P(sol) polarization free energy of solvation -62.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds