Wall clock time and date at job start Tue Mar 31 2020 23:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46948 * 2 1 4 4 H 1.08999 * 109.46902 * 305.59034 * 3 2 1 5 5 C 1.50706 * 109.46968 * 185.59078 * 3 2 1 6 6 H 1.08002 * 119.99360 * 239.99644 * 5 3 2 7 7 C 1.37872 * 120.00157 * 59.99668 * 5 3 2 8 8 N 1.31519 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99868 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46985 * 90.00532 * 9 7 5 11 11 H 1.48506 * 109.47046 * 209.99943 * 9 7 5 12 12 H 1.48497 * 109.47344 * 330.00389 * 9 7 5 13 13 N 1.46501 * 109.47000 * 65.59014 * 3 2 1 14 14 S 1.65603 * 119.99739 * 243.84145 * 13 3 2 15 15 O 1.42095 * 106.40101 * 180.81800 * 14 13 3 16 16 O 1.42102 * 106.39802 * 47.89813 * 14 13 3 17 17 C 1.76203 * 107.21999 * 294.36135 * 14 13 3 18 18 C 1.37959 * 119.92498 * 117.50999 * 17 14 13 19 19 C 1.39609 * 119.84634 * 179.72163 * 18 17 14 20 20 C 1.47729 * 120.15138 * 180.02562 * 19 18 17 21 21 O 1.21467 * 119.99786 * 359.97438 * 20 19 18 22 22 O 1.34709 * 120.00023 * 180.02562 * 20 19 18 23 23 C 1.45204 * 117.00127 * 179.97438 * 22 20 19 24 24 C 1.39652 * 119.70017 * 0.02562 * 19 18 17 25 25 C 1.37925 * 119.84941 * 359.97438 * 24 19 18 26 26 C 1.38348 * 119.92080 * 297.22709 * 17 14 13 27 27 C 1.50704 * 119.84784 * 0.28241 * 26 17 14 28 28 H 1.08999 * 109.47191 * 59.00951 * 1 2 3 29 29 H 1.09004 * 109.46739 * 179.00879 * 1 2 3 30 30 H 1.09000 * 109.47039 * 299.01018 * 1 2 3 31 31 H 1.09001 * 109.47257 * 240.00220 * 2 1 3 32 32 H 1.08998 * 109.47114 * 119.99969 * 2 1 3 33 33 H 0.96995 * 120.00092 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00395 * 63.85115 * 13 3 2 35 35 H 1.08001 * 120.07806 * 359.69523 * 18 17 14 36 36 H 1.08995 * 109.46980 * 179.97438 * 23 22 20 37 37 H 1.08999 * 109.46760 * 300.00535 * 23 22 20 38 38 H 1.08997 * 109.46398 * 60.00202 * 23 22 20 39 39 H 1.08006 * 120.07695 * 180.02562 * 24 19 18 40 40 H 1.07996 * 119.92929 * 180.02562 * 25 24 19 41 41 H 1.09001 * 109.47306 * 83.92474 * 27 26 17 42 42 H 1.09000 * 109.46811 * 203.92493 * 27 26 17 43 43 H 1.08998 * 109.46912 * 323.91902 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5407 1.4448 -0.1384 6 1 4.1534 1.8868 0.6334 7 6 4.1313 0.8827 -1.2502 8 7 3.3851 0.3449 -2.1902 9 14 5.9914 0.8862 -1.4220 10 1 6.5473 -0.3474 -0.8100 11 1 6.3555 0.9321 -2.8610 12 1 6.5501 2.0763 -0.7318 13 7 1.6646 2.0932 1.2578 14 16 0.6280 3.3846 1.2447 15 8 0.4812 3.7950 2.5972 16 8 -0.4689 3.0102 0.4226 17 6 1.4476 4.7029 0.4108 18 6 0.9230 5.2077 -0.7610 19 6 1.5705 6.2560 -1.4173 20 6 1.0143 6.8021 -2.6722 21 8 -0.0083 6.3386 -3.1356 22 8 1.6419 7.8134 -3.3032 23 6 1.0390 8.2994 -4.5315 24 6 2.7463 6.7862 -0.8820 25 6 3.2598 6.2721 0.2903 26 6 2.6125 5.2332 0.9359 27 6 3.1795 4.6766 2.2165 28 1 -0.3633 0.5291 -0.8810 29 1 -0.3633 -1.0276 -0.0178 30 1 -0.3633 0.4984 0.8987 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8006 -0.0502 -2.9726 34 1 2.0232 1.7677 2.0981 35 1 0.0137 4.7925 -1.1700 36 1 1.6426 9.1118 -4.9358 37 1 0.9884 7.4877 -5.2572 38 1 0.0331 8.6636 -4.3229 39 1 3.2521 7.5976 -1.3844 40 1 4.1688 6.6814 0.7056 41 1 3.7830 3.7965 1.9943 42 1 3.8014 5.4318 2.6970 43 1 2.3640 4.3989 2.8843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186428362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:41 Heat of formation + Delta-G solvation = -141.422580 kcal Electronic energy + Delta-G solvation = -28877.108545 eV Core-core repulsion = 24821.381763 eV Total energy + Delta-G solvation = -4055.726782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57116 -38.98189 -36.89091 -36.44305 -35.95390 -35.37305 -33.07037 -32.25560 -31.28046 -30.53506 -28.55144 -26.92627 -26.67216 -23.26477 -23.01331 -22.92151 -20.98542 -20.12837 -19.19605 -18.17881 -17.28636 -17.13026 -16.42345 -16.37652 -15.88884 -15.63986 -15.41526 -15.07245 -14.44039 -14.11644 -13.92394 -13.73047 -13.51780 -13.34665 -13.12005 -12.95654 -12.43460 -12.31235 -12.17927 -11.97393 -11.81769 -11.72246 -11.56499 -11.47131 -11.27036 -11.25033 -10.93109 -10.89362 -10.86139 -10.66329 -10.45721 -10.23766 -10.00933 -9.69611 -9.50789 -9.33459 -8.82338 -8.55736 -8.27565 -6.16070 -4.25665 0.59459 0.93253 1.12624 2.44798 2.60240 3.19759 3.27690 3.28123 3.50209 3.69607 4.21321 4.30244 4.57921 4.65659 4.83731 4.95604 4.98671 5.03798 5.06715 5.13974 5.30901 5.40669 5.49310 5.65328 5.79802 5.81237 5.97460 6.12839 6.20143 6.23575 6.28453 6.33811 6.37380 6.39031 6.66345 6.76053 6.91248 7.13280 7.24799 7.57584 7.64602 7.70145 7.82378 7.97516 8.22755 8.77161 9.41206 10.88280 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.005129 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.276417 B = 5457.536765 C = 6411.672439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.047 0.953 5 C -0.530 4.530 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 N -1.096 6.096 14 S 2.692 3.308 15 O -0.979 6.979 16 O -0.957 6.957 17 C -0.679 4.679 18 C 0.052 3.948 19 C -0.161 4.161 20 C 0.512 3.488 21 O -0.501 6.501 22 O -0.358 6.358 23 C 0.037 3.963 24 C -0.011 4.011 25 C -0.158 4.158 26 C 0.070 3.930 27 C -0.178 4.178 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.409 0.591 35 H 0.156 0.844 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 12.435 2.422 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.176 3.824 4 H 0.065 0.935 5 C -0.569 4.569 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.521 5.521 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.857 5.857 14 S 2.780 3.220 15 O -0.969 6.969 16 O -0.947 6.947 17 C -0.764 4.764 18 C 0.033 3.967 19 C -0.163 4.163 20 C 0.357 3.643 21 O -0.389 6.389 22 O -0.274 6.274 23 C -0.057 4.057 24 C -0.029 4.029 25 C -0.177 4.177 26 C 0.069 3.931 27 C -0.234 4.234 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.242 0.758 35 H 0.173 0.827 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.047 12.349 2.212 12.589 hybrid contribution 1.801 0.259 -0.619 1.922 sum 0.754 12.608 1.593 12.730 Atomic orbital electron populations 1.21829 0.98440 0.99113 1.01058 1.21909 0.92512 0.99400 1.02886 1.18610 0.94991 0.90237 0.78593 0.93506 1.21388 0.91049 1.38796 1.05679 0.91817 1.24909 0.98232 0.94933 0.95602 1.69861 1.35001 1.37894 1.09324 0.86568 0.85412 0.78485 0.77369 1.20528 1.21199 1.19903 1.55493 1.67216 1.45955 1.17042 1.01889 0.73904 0.73178 0.73061 1.93491 1.86087 1.83004 1.34304 1.93580 1.49403 1.81758 1.69935 1.31001 1.11250 1.23396 1.10734 1.21004 0.96949 0.89279 0.89454 1.19026 0.99691 1.02039 0.95509 1.21116 0.81863 0.77269 0.84021 1.90857 1.23858 1.58367 1.65864 1.86518 1.53649 1.48804 1.38475 1.23275 0.99144 0.99732 0.83532 1.21619 0.92048 0.95902 0.93343 1.21124 1.01322 0.98635 0.96611 1.19789 0.89452 0.90216 0.93636 1.21721 1.04033 1.03452 0.94182 0.92934 0.94863 0.94464 0.87871 0.94272 0.92523 0.75766 0.82673 0.88050 0.91643 0.91838 0.84072 0.84428 0.87736 0.89988 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.21 37.16 0.34 -2.68 16 2 C -0.13 -2.84 5.45 -26.73 -0.15 -2.98 16 3 C 0.28 6.32 2.26 -69.08 -0.16 6.16 16 4 H 0.05 1.18 7.71 -51.93 -0.40 0.78 16 5 C -0.53 -12.77 8.84 -34.44 -0.30 -13.08 16 6 H 0.06 1.46 7.72 -52.49 -0.40 1.06 16 7 C 0.07 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.88 -23.44 11.29 55.43 0.63 -22.82 16 9 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 N -1.10 -20.52 4.54 -5.88 -0.03 -20.54 16 14 S 2.69 50.09 4.89 -107.50 -0.53 49.57 16 15 O -0.98 -18.31 15.54 -57.17 -0.89 -19.20 16 16 O -0.96 -20.18 15.41 -57.17 -0.88 -21.06 16 17 C -0.68 -12.04 5.88 -39.64 -0.23 -12.27 16 18 C 0.05 0.94 9.09 -39.17 -0.36 0.59 16 19 C -0.16 -2.60 5.87 -104.98 -0.62 -3.21 16 20 C 0.51 8.20 7.90 34.61 0.27 8.48 16 21 O -0.50 -9.25 16.14 -19.24 -0.31 -9.56 16 22 O -0.36 -4.66 9.82 -40.52 -0.40 -5.06 16 23 C 0.04 0.35 10.57 101.05 1.07 1.42 16 24 C -0.01 -0.15 9.62 -39.17 -0.38 -0.52 16 25 C -0.16 -2.12 9.65 -39.64 -0.38 -2.50 16 26 C 0.07 1.09 5.88 -104.52 -0.61 0.48 16 27 C -0.18 -2.39 9.14 36.01 0.33 -2.06 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.73 7.23 -51.93 -0.38 0.35 16 31 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.41 6.64 8.96 -34.47 -0.31 6.33 16 35 H 0.16 2.88 6.93 -52.49 -0.36 2.51 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.14 1.48 7.61 -52.48 -0.40 1.08 16 40 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.10 1.44 8.04 -51.93 -0.42 1.02 16 42 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 43 H 0.10 1.47 5.19 -51.93 -0.27 1.20 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -31.10 371.72 -8.85 -39.95 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.76 Total: 8.98 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.27 Total: -20.59 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.60 Total: -43.36 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -2.48 Total: -54.87 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.53 Total: 49.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.10 -8.85 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186428362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.472 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds