Wall clock time and date at job start Tue Mar 31 2020 23:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46948 * 2 1 4 4 H 1.08999 * 109.46902 * 305.59034 * 3 2 1 5 5 C 1.50706 * 109.46968 * 185.59078 * 3 2 1 6 6 H 1.08002 * 119.99360 * 239.99644 * 5 3 2 7 7 C 1.37872 * 120.00157 * 59.99668 * 5 3 2 8 8 N 1.31519 * 120.00147 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99868 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46985 * 90.00532 * 9 7 5 11 11 H 1.48506 * 109.47046 * 209.99943 * 9 7 5 12 12 H 1.48497 * 109.47344 * 330.00389 * 9 7 5 13 13 N 1.46501 * 109.47000 * 65.59014 * 3 2 1 14 14 S 1.65603 * 119.99739 * 243.84145 * 13 3 2 15 15 O 1.42095 * 106.40101 * 180.81800 * 14 13 3 16 16 O 1.42102 * 106.39802 * 47.89813 * 14 13 3 17 17 C 1.76203 * 107.21999 * 294.36135 * 14 13 3 18 18 C 1.37959 * 119.92498 * 117.50999 * 17 14 13 19 19 C 1.39609 * 119.84634 * 179.72163 * 18 17 14 20 20 C 1.47729 * 120.15138 * 180.02562 * 19 18 17 21 21 O 1.21467 * 119.99786 * 359.97438 * 20 19 18 22 22 O 1.34709 * 120.00023 * 180.02562 * 20 19 18 23 23 C 1.45204 * 117.00127 * 179.97438 * 22 20 19 24 24 C 1.39652 * 119.70017 * 0.02562 * 19 18 17 25 25 C 1.37925 * 119.84941 * 359.97438 * 24 19 18 26 26 C 1.38348 * 119.92080 * 297.22709 * 17 14 13 27 27 C 1.50704 * 119.84784 * 0.28241 * 26 17 14 28 28 H 1.08999 * 109.47191 * 59.00951 * 1 2 3 29 29 H 1.09004 * 109.46739 * 179.00879 * 1 2 3 30 30 H 1.09000 * 109.47039 * 299.01018 * 1 2 3 31 31 H 1.09001 * 109.47257 * 240.00220 * 2 1 3 32 32 H 1.08998 * 109.47114 * 119.99969 * 2 1 3 33 33 H 0.96995 * 120.00092 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00395 * 63.85115 * 13 3 2 35 35 H 1.08001 * 120.07806 * 359.69523 * 18 17 14 36 36 H 1.08995 * 109.46980 * 179.97438 * 23 22 20 37 37 H 1.08999 * 109.46760 * 300.00535 * 23 22 20 38 38 H 1.08997 * 109.46398 * 60.00202 * 23 22 20 39 39 H 1.08006 * 120.07695 * 180.02562 * 24 19 18 40 40 H 1.07996 * 119.92929 * 180.02562 * 25 24 19 41 41 H 1.09001 * 109.47306 * 83.92474 * 27 26 17 42 42 H 1.09000 * 109.46811 * 203.92493 * 27 26 17 43 43 H 1.08998 * 109.46912 * 323.91902 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5972 1.9844 -0.8357 5 6 3.5407 1.4448 -0.1384 6 1 4.1534 1.8868 0.6334 7 6 4.1313 0.8827 -1.2502 8 7 3.3851 0.3449 -2.1902 9 14 5.9914 0.8862 -1.4220 10 1 6.5473 -0.3474 -0.8100 11 1 6.3555 0.9321 -2.8610 12 1 6.5501 2.0763 -0.7318 13 7 1.6646 2.0932 1.2578 14 16 0.6280 3.3846 1.2447 15 8 0.4812 3.7950 2.5972 16 8 -0.4689 3.0102 0.4226 17 6 1.4476 4.7029 0.4108 18 6 0.9230 5.2077 -0.7610 19 6 1.5705 6.2560 -1.4173 20 6 1.0143 6.8021 -2.6722 21 8 -0.0083 6.3386 -3.1356 22 8 1.6419 7.8134 -3.3032 23 6 1.0390 8.2994 -4.5315 24 6 2.7463 6.7862 -0.8820 25 6 3.2598 6.2721 0.2903 26 6 2.6125 5.2332 0.9359 27 6 3.1795 4.6766 2.2165 28 1 -0.3633 0.5291 -0.8810 29 1 -0.3633 -1.0276 -0.0178 30 1 -0.3633 0.4984 0.8987 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8006 -0.0502 -2.9726 34 1 2.0232 1.7677 2.0981 35 1 0.0137 4.7925 -1.1700 36 1 1.6426 9.1118 -4.9358 37 1 0.9884 7.4877 -5.2572 38 1 0.0331 8.6636 -4.3229 39 1 3.2521 7.5976 -1.3844 40 1 4.1688 6.6814 0.7056 41 1 3.7830 3.7965 1.9943 42 1 3.8014 5.4318 2.6970 43 1 2.3640 4.3989 2.8843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186428362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:41 Heat of formation + Delta-G solvation = -161.407320 kcal Electronic energy + Delta-G solvation = -28877.975148 eV Core-core repulsion = 24821.381763 eV Total energy + Delta-G solvation = -4056.593385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75231 -40.14175 -38.44162 -37.70410 -37.58773 -36.93948 -34.30506 -34.04563 -32.48012 -32.22773 -29.55194 -28.53287 -27.88500 -24.85136 -24.47137 -24.04973 -22.19010 -21.88793 -20.60353 -19.54798 -18.86560 -18.40538 -18.03068 -17.49774 -17.20564 -17.16101 -16.67094 -16.55334 -15.95813 -15.42917 -15.19140 -15.02948 -14.82377 -14.70407 -14.59351 -14.40268 -13.64125 -13.52455 -13.49227 -13.40050 -13.17288 -13.13780 -13.11437 -12.98056 -12.76169 -12.70216 -12.60627 -12.56044 -12.10995 -11.90559 -11.90290 -11.79078 -11.61349 -11.50301 -11.27832 -10.55907 -10.45384 -10.01321 -9.97124 -8.06702 -6.21584 -0.62046 -0.49364 -0.15386 1.24967 1.46908 1.48967 1.52971 1.56798 2.08704 2.38577 2.49125 2.76147 3.22026 3.39677 3.51723 3.66027 3.72978 3.92757 4.17323 4.26626 4.29490 4.36350 4.49949 4.52473 4.61535 4.65284 4.68413 4.70317 4.77276 4.84557 4.92701 4.99238 5.13116 5.15963 5.18317 5.22883 5.38086 5.48147 5.64521 5.71548 5.81842 6.10171 6.18610 6.48739 6.52359 6.89407 7.48347 8.97174 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.005129 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.276417 B = 5457.536765 C = 6411.672439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.287 3.713 4 H 0.014 0.986 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.952 3.048 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.260 1.260 13 N -1.089 6.089 14 S 2.704 3.296 15 O -0.980 6.980 16 O -0.990 6.990 17 C -0.697 4.697 18 C 0.026 3.974 19 C -0.176 4.176 20 C 0.513 3.487 21 O -0.538 6.538 22 O -0.349 6.349 23 C 0.028 3.972 24 C 0.002 3.998 25 C -0.149 4.149 26 C 0.058 3.942 27 C -0.180 4.180 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.261 0.739 34 H 0.421 0.579 35 H 0.132 0.868 36 H 0.143 0.857 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.179 0.821 40 H 0.184 0.816 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 14.473 3.559 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.182 3.818 4 H 0.032 0.968 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.851 5.851 14 S 2.794 3.206 15 O -0.970 6.970 16 O -0.980 6.980 17 C -0.784 4.784 18 C 0.006 3.994 19 C -0.178 4.178 20 C 0.360 3.640 21 O -0.430 6.430 22 O -0.265 6.265 23 C -0.065 4.065 24 C -0.016 4.016 25 C -0.167 4.167 26 C 0.057 3.943 27 C -0.236 4.236 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.257 0.743 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.197 0.803 40 H 0.201 0.799 41 H 0.121 0.879 42 H 0.138 0.862 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.715 14.381 3.397 14.876 hybrid contribution 0.932 -0.259 -0.999 1.391 sum 2.647 14.123 2.397 14.567 Atomic orbital electron populations 1.21755 0.97346 1.00311 1.00431 1.21818 0.93521 0.99106 1.02133 1.18279 0.94381 0.90119 0.79018 0.96818 1.21733 0.91795 1.37790 1.05640 0.90439 1.25656 1.02067 0.94962 0.95554 1.70017 1.36550 1.39153 1.09862 0.85646 0.80832 0.78951 0.76774 1.20228 1.22086 1.18355 1.55205 1.67122 1.46396 1.16400 1.01284 0.73394 0.73211 0.72689 1.93484 1.86197 1.82972 1.34367 1.93535 1.51320 1.82537 1.70657 1.30713 1.12907 1.23626 1.11145 1.20933 0.97106 0.90910 0.90464 1.19194 1.00862 1.01963 0.95805 1.21213 0.81338 0.77450 0.84003 1.90836 1.25543 1.59727 1.66873 1.86500 1.53204 1.47386 1.39449 1.23658 1.00300 1.00559 0.82002 1.22073 0.90476 0.95904 0.93157 1.21664 1.02095 0.97118 0.95851 1.20223 0.88696 0.90827 0.94566 1.21805 1.04101 1.04526 0.93122 0.94950 0.92658 0.93741 0.90476 0.93038 0.92923 0.74340 0.85048 0.83920 0.92320 0.91627 0.80350 0.79887 0.87946 0.86182 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 9.21 71.98 0.66 -5.26 16 2 C -0.13 -5.71 5.45 30.60 0.17 -5.55 16 3 C 0.29 13.23 2.26 44.25 0.10 13.33 16 4 H 0.01 0.74 7.71 -2.39 -0.02 0.72 16 5 C -0.53 -25.35 8.84 25.60 0.23 -25.12 16 6 H 0.08 3.41 7.72 -2.91 -0.02 3.39 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -49.82 11.29 21.45 0.24 -49.58 16 9 Si 0.95 39.81 29.54 68.60 2.03 41.83 16 10 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 13 N -1.09 -40.97 4.54 -172.51 -0.78 -41.75 16 14 S 2.70 102.97 4.89 -56.49 -0.28 102.70 16 15 O -0.98 -36.58 15.54 -128.00 -1.99 -38.57 16 16 O -0.99 -44.11 15.41 -128.00 -1.97 -46.08 16 17 C -0.70 -24.91 5.88 22.23 0.13 -24.78 16 18 C 0.03 0.96 9.09 22.53 0.20 1.17 16 19 C -0.18 -5.65 5.87 -20.10 -0.12 -5.77 16 20 C 0.51 16.51 7.90 70.33 0.56 17.06 16 21 O -0.54 -20.79 16.14 19.94 0.32 -20.47 16 22 O -0.35 -8.51 9.82 -56.19 -0.55 -9.06 16 23 C 0.03 0.48 10.57 113.37 1.20 1.68 16 24 C 0.00 0.04 9.62 22.54 0.22 0.26 16 25 C -0.15 -3.39 9.65 22.23 0.21 -3.18 16 26 C 0.06 1.69 5.88 -19.80 -0.12 1.57 16 27 C -0.18 -4.30 9.14 71.24 0.65 -3.65 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.04 1.76 7.23 -2.39 -0.02 1.75 16 31 H 0.08 3.96 5.94 -2.39 -0.01 3.94 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.42 13.39 8.96 -96.75 -0.87 12.53 16 35 H 0.13 5.40 6.93 -2.91 -0.02 5.38 16 36 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.18 2.88 7.61 -2.91 -0.02 2.86 16 40 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.10 2.52 8.04 -2.39 -0.02 2.50 16 42 H 0.12 1.92 8.04 -2.39 -0.02 1.90 16 43 H 0.09 2.46 5.19 -2.39 -0.01 2.45 16 Total: -1.00 -69.74 371.72 1.74 -68.00 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.18 Total: 29.88 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 4.54 Total: -36.90 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -0.54 Total: -91.33 kcal Atomic # 8 Polarization: -109.99 SS G_CDS: -4.19 Total: -114.18 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Atomic # 16 Polarization: 102.97 SS G_CDS: -0.28 Total: 102.70 kcal Total: -69.74 1.74 -68.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186428362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.403 kcal (2) G-P(sol) polarization free energy of solvation -69.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds