Wall clock time and date at job start Tue Mar 31 2020 23:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 C 1.53000 * 109.47092 * 120.00004 * 2 1 3 5 5 C 1.53005 * 109.46869 * 299.99827 * 4 2 1 6 6 N 1.46503 * 109.46690 * 180.02562 * 5 4 2 7 7 S 1.65600 * 119.99765 * 164.72873 * 6 5 4 8 8 O 1.42094 * 106.40512 * 178.53760 * 7 6 5 9 9 O 1.42106 * 106.40226 * 311.45618 * 7 6 5 10 10 C 1.76198 * 107.22067 * 64.99582 * 7 6 5 11 11 C 1.38640 * 119.75037 * 269.72949 * 10 7 6 12 12 C 1.37618 * 120.24754 * 179.72238 * 11 10 7 13 13 C 1.40708 * 119.74303 * 0.56852 * 12 11 10 14 14 C 1.41395 * 120.24350 * 179.68190 * 13 12 11 15 15 H 1.07999 * 120.00421 * 204.40366 * 14 13 12 16 16 C 1.39948 * 120.00045 * 24.41232 * 14 13 12 17 17 N 1.30828 * 119.99938 * 17.83864 * 16 14 13 18 18 Si 1.86804 * 120.00206 * 197.84763 * 16 14 13 19 19 H 1.48497 * 109.46953 * 59.99362 * 18 16 14 20 20 H 1.48494 * 109.47057 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46965 * 299.99721 * 18 16 14 22 22 C 1.40718 * 119.51587 * 359.70656 * 13 12 11 23 23 C 1.37623 * 119.74191 * 359.97438 * 22 13 12 24 24 C 1.50700 * 109.47050 * 239.99884 * 2 1 3 25 25 O 1.20827 * 120.00117 * 240.00185 * 24 2 1 26 26 O 1.34224 * 120.00094 * 60.00221 * 24 2 1 27 27 H 1.09001 * 109.47318 * 300.00581 * 1 2 3 28 28 H 1.09007 * 109.47408 * 60.00053 * 1 2 3 29 29 H 1.08999 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47041 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46806 * 300.00316 * 3 2 1 32 32 H 1.08993 * 109.47075 * 59.99477 * 3 2 1 33 33 H 1.08997 * 109.47183 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46984 * 59.99844 * 4 2 1 35 35 H 1.08997 * 109.46914 * 60.00208 * 5 4 2 36 36 H 1.08999 * 109.47332 * 299.99805 * 5 4 2 37 37 H 0.96997 * 120.00372 * 344.99577 * 6 5 4 38 38 H 1.08001 * 119.87510 * 359.97438 * 11 10 7 39 39 H 1.07997 * 120.12712 * 180.27635 * 12 11 10 40 40 H 0.96994 * 120.00050 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.13001 * 179.97438 * 22 13 12 42 42 H 1.07999 * 119.87507 * 179.97438 * 23 22 13 43 43 H 0.96704 * 117.00169 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5299 0.0001 2.4985 6 7 2.0188 -0.6902 3.6947 7 16 1.9511 0.0601 5.1694 8 8 2.4601 -0.8691 6.1162 9 8 2.4971 1.3590 4.9842 10 6 0.2484 0.2874 5.5613 11 6 -0.3972 1.4517 5.1741 12 6 -1.7284 1.6374 5.4699 13 6 -2.4310 0.6454 6.1785 14 6 -3.7972 0.8282 6.4938 15 1 -4.2321 0.3066 7.3335 16 6 -4.5859 1.6850 5.7177 17 7 -4.1857 2.0405 4.5239 18 14 -6.2101 2.3212 6.3862 19 1 -5.9651 3.0899 7.6329 20 1 -6.8485 3.2047 5.3777 21 1 -7.1075 1.1750 6.6798 22 6 -1.7641 -0.5297 6.5714 23 6 -0.4343 -0.6970 6.2590 24 6 2.0323 -0.7104 -1.2305 25 8 2.7269 -1.6928 -1.1196 26 8 1.7080 -0.2519 -2.4496 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2492 35 1 0.4399 0.0001 2.4985 36 1 1.8933 1.0277 2.4985 37 1 2.3857 -1.5852 3.6223 38 1 0.1455 2.2139 4.6348 39 1 -2.2305 2.5431 5.1634 40 1 -4.7322 2.6346 3.9861 41 1 -2.2937 -1.2973 7.1160 42 1 0.0798 -1.5978 6.5599 43 1 2.0541 -0.7406 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314002670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:50 Heat of formation + Delta-G solvation = -172.431466 kcal Electronic energy + Delta-G solvation = -27717.425138 eV Core-core repulsion = 23660.353710 eV Total energy + Delta-G solvation = -4057.071428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80189 -37.61841 -37.48646 -36.47205 -36.24562 -35.13231 -34.18945 -34.05050 -30.27988 -29.48792 -28.38702 -27.58217 -25.84185 -25.12794 -22.83925 -21.53022 -21.15125 -19.66072 -18.79599 -18.08205 -17.64109 -17.14151 -16.77903 -16.46166 -15.96363 -15.60634 -15.47255 -14.91096 -14.51971 -14.16615 -13.98540 -13.72485 -13.42430 -13.31466 -13.21310 -12.66375 -12.43211 -12.21322 -12.13474 -11.96488 -11.81645 -11.77686 -11.61759 -11.46585 -11.37626 -11.29916 -11.27429 -11.24286 -11.06199 -10.99095 -10.90172 -10.45996 -10.44802 -9.77932 -9.64770 -9.52290 -9.01861 -7.98480 -7.72693 -7.17378 -4.82671 1.25043 2.00206 2.23476 2.77784 2.86258 2.87609 2.90013 2.93272 3.64181 3.71606 4.20687 4.41683 4.51014 4.56814 4.63960 5.00654 5.11050 5.15680 5.28698 5.36483 5.49909 5.52192 5.57468 5.63877 5.76056 5.82566 5.90560 6.05353 6.08877 6.10845 6.18878 6.21827 6.30109 6.65671 6.68635 6.89047 7.02741 7.29092 7.33122 7.40739 7.61026 7.67368 7.74635 7.94633 8.29229 8.48938 8.62636 9.74003 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003441 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.767294 B = 8135.078526 C =10067.364751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C -0.149 4.149 4 C -0.108 4.108 5 C 0.118 3.882 6 N -1.127 6.127 7 S 2.694 3.306 8 O -0.986 6.986 9 O -0.985 6.985 10 C -0.787 4.787 11 C -0.017 4.017 12 C -0.182 4.182 13 C 0.140 3.860 14 C -0.435 4.435 15 H 0.087 0.913 16 C 0.074 3.926 17 N -0.766 5.766 18 Si 0.917 3.083 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.239 4.239 23 C 0.003 3.997 24 C 0.490 3.510 25 O -0.515 6.515 26 O -0.513 6.513 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.410 0.590 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.289 0.711 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 -1.120 -11.697 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.051 4.051 3 C -0.207 4.207 4 C -0.147 4.147 5 C -0.009 4.009 6 N -0.883 5.883 7 S 2.793 3.207 8 O -0.977 6.977 9 O -0.975 6.975 10 C -0.883 4.883 11 C -0.038 4.038 12 C -0.203 4.203 13 C 0.136 3.864 14 C -0.463 4.463 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.388 5.388 18 Si 0.740 3.260 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.186 1.186 22 C -0.260 4.260 23 C -0.017 4.017 24 C 0.332 3.668 25 O -0.403 6.403 26 O -0.324 6.324 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.243 0.757 38 H 0.121 0.879 39 H 0.140 0.860 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 5.582 -0.604 -11.063 12.406 hybrid contribution -1.155 -0.611 -0.579 1.429 sum 4.427 -1.215 -11.642 12.514 Atomic orbital electron populations 1.22010 0.90875 1.03397 1.04397 1.20477 0.98471 0.96848 0.89344 1.22006 1.01655 0.92747 1.04250 1.21714 1.02074 0.99856 0.91090 1.21350 0.99606 0.96307 0.83603 1.55711 1.79228 1.29649 1.23687 1.01192 0.75235 0.72669 0.71628 1.93491 1.80348 1.64336 1.59511 1.93479 1.78407 1.39881 1.85706 1.29148 1.23562 1.07246 1.28386 1.20259 0.94699 0.93528 0.95287 1.21330 0.92707 1.00424 1.05802 1.17843 0.92650 0.89256 0.86633 1.19922 0.94217 1.20778 1.11357 0.89496 1.26117 1.00948 0.94001 0.93805 1.69799 1.37620 1.24281 1.07127 0.86202 0.80097 0.79689 0.80018 1.18355 1.19880 1.18573 1.21054 0.94852 0.98905 1.11189 1.20165 0.94024 0.95043 0.92489 1.23511 0.76511 0.82102 0.84707 1.90717 1.35995 1.26293 1.87302 1.84545 1.72190 1.58929 1.16778 0.89617 0.91075 0.91821 0.91882 0.91016 0.89853 0.90227 0.90155 0.90715 0.90101 0.75718 0.87886 0.85957 0.89944 0.88226 0.87800 0.73430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.05 37.15 0.30 -1.17 16 2 C -0.05 -0.50 0.74 -155.66 -0.11 -0.62 16 3 C -0.15 -1.35 8.05 37.16 0.30 -1.06 16 4 C -0.11 -1.22 3.70 -26.73 -0.10 -1.32 16 5 C 0.12 1.54 5.52 -4.04 -0.02 1.51 16 6 N -1.13 -16.42 6.00 -10.61 -0.06 -16.48 16 7 S 2.69 50.65 5.73 -107.50 -0.62 50.04 16 8 O -0.99 -20.63 17.26 -57.17 -0.99 -21.62 16 9 O -0.98 -20.42 16.72 -57.17 -0.96 -21.38 16 10 C -0.79 -16.80 5.97 -39.29 -0.23 -17.04 16 11 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 12 C -0.18 -4.39 8.70 -38.88 -0.34 -4.73 16 13 C 0.14 3.45 5.57 -106.83 -0.60 2.86 16 14 C -0.44 -10.43 9.05 -37.74 -0.34 -10.77 16 15 H 0.09 1.98 7.91 -52.49 -0.41 1.56 16 16 C 0.07 1.64 5.14 -17.34 -0.09 1.55 16 17 N -0.77 -17.44 10.95 55.55 0.61 -16.84 16 18 Si 0.92 16.59 29.60 -169.99 -5.03 11.56 16 19 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 20 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 21 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 22 C -0.24 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 24 C 0.49 5.20 6.92 36.01 0.25 5.45 16 25 O -0.52 -6.95 16.74 -18.75 -0.31 -7.27 16 26 O -0.51 -4.08 13.23 -39.24 -0.52 -4.60 16 27 H 0.09 0.88 6.43 -51.93 -0.33 0.55 16 28 H 0.07 0.63 8.11 -51.92 -0.42 0.21 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.58 8.11 -51.92 -0.42 0.16 16 32 H 0.08 0.76 6.43 -51.93 -0.33 0.43 16 33 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 35 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 36 H 0.08 1.04 6.03 -51.93 -0.31 0.73 16 37 H 0.41 5.08 8.65 -34.47 -0.30 4.78 16 38 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 39 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 40 H 0.29 5.91 8.30 -40.82 -0.34 5.58 16 41 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 42 H 0.10 2.07 7.60 -52.49 -0.40 1.67 16 43 H 0.41 1.56 9.10 45.56 0.41 1.97 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -31.48 371.14 -9.23 -40.70 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -4.82 Total: 12.62 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: -2.12 Total: -32.33 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.54 Total: -33.32 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -2.78 Total: -54.87 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 50.65 SS G_CDS: -0.62 Total: 50.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.48 -9.23 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314002670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.729 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds