Wall clock time and date at job start Tue Mar 31 2020 23:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47382 * 2 1 4 4 C 1.53000 * 109.47092 * 120.00004 * 2 1 3 5 5 C 1.53005 * 109.46869 * 299.99827 * 4 2 1 6 6 N 1.46503 * 109.46690 * 180.02562 * 5 4 2 7 7 S 1.65600 * 119.99765 * 164.72873 * 6 5 4 8 8 O 1.42094 * 106.40512 * 178.53760 * 7 6 5 9 9 O 1.42106 * 106.40226 * 311.45618 * 7 6 5 10 10 C 1.76198 * 107.22067 * 64.99582 * 7 6 5 11 11 C 1.38640 * 119.75037 * 269.72949 * 10 7 6 12 12 C 1.37618 * 120.24754 * 179.72238 * 11 10 7 13 13 C 1.40708 * 119.74303 * 0.56852 * 12 11 10 14 14 C 1.41395 * 120.24350 * 179.68190 * 13 12 11 15 15 H 1.07999 * 120.00421 * 204.40366 * 14 13 12 16 16 C 1.39948 * 120.00045 * 24.41232 * 14 13 12 17 17 N 1.30828 * 119.99938 * 17.83864 * 16 14 13 18 18 Si 1.86804 * 120.00206 * 197.84763 * 16 14 13 19 19 H 1.48497 * 109.46953 * 59.99362 * 18 16 14 20 20 H 1.48494 * 109.47057 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46965 * 299.99721 * 18 16 14 22 22 C 1.40718 * 119.51587 * 359.70656 * 13 12 11 23 23 C 1.37623 * 119.74191 * 359.97438 * 22 13 12 24 24 C 1.50700 * 109.47050 * 239.99884 * 2 1 3 25 25 O 1.20827 * 120.00117 * 240.00185 * 24 2 1 26 26 O 1.34224 * 120.00094 * 60.00221 * 24 2 1 27 27 H 1.09001 * 109.47318 * 300.00581 * 1 2 3 28 28 H 1.09007 * 109.47408 * 60.00053 * 1 2 3 29 29 H 1.08999 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47041 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.46806 * 300.00316 * 3 2 1 32 32 H 1.08993 * 109.47075 * 59.99477 * 3 2 1 33 33 H 1.08997 * 109.47183 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46984 * 59.99844 * 4 2 1 35 35 H 1.08997 * 109.46914 * 60.00208 * 5 4 2 36 36 H 1.08999 * 109.47332 * 299.99805 * 5 4 2 37 37 H 0.96997 * 120.00372 * 344.99577 * 6 5 4 38 38 H 1.08001 * 119.87510 * 359.97438 * 11 10 7 39 39 H 1.07997 * 120.12712 * 180.27635 * 12 11 10 40 40 H 0.96994 * 120.00050 * 180.02562 * 17 16 14 41 41 H 1.07995 * 120.13001 * 179.97438 * 22 13 12 42 42 H 1.07999 * 119.87507 * 179.97438 * 23 22 13 43 43 H 0.96704 * 117.00169 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5299 0.0001 2.4985 6 7 2.0188 -0.6902 3.6947 7 16 1.9511 0.0601 5.1694 8 8 2.4601 -0.8691 6.1162 9 8 2.4971 1.3590 4.9842 10 6 0.2484 0.2874 5.5613 11 6 -0.3972 1.4517 5.1741 12 6 -1.7284 1.6374 5.4699 13 6 -2.4310 0.6454 6.1785 14 6 -3.7972 0.8282 6.4938 15 1 -4.2321 0.3066 7.3335 16 6 -4.5859 1.6850 5.7177 17 7 -4.1857 2.0405 4.5239 18 14 -6.2101 2.3212 6.3862 19 1 -5.9651 3.0899 7.6329 20 1 -6.8485 3.2047 5.3777 21 1 -7.1075 1.1750 6.6798 22 6 -1.7641 -0.5297 6.5714 23 6 -0.4343 -0.6970 6.2590 24 6 2.0323 -0.7104 -1.2305 25 8 2.7269 -1.6928 -1.1196 26 8 1.7080 -0.2519 -2.4496 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1299 -0.7209 1.2495 34 1 1.6766 -1.7489 1.2492 35 1 0.4399 0.0001 2.4985 36 1 1.8933 1.0277 2.4985 37 1 2.3857 -1.5852 3.6223 38 1 0.1455 2.2139 4.6348 39 1 -2.2305 2.5431 5.1634 40 1 -4.7322 2.6346 3.9861 41 1 -2.2937 -1.2973 7.1160 42 1 0.0798 -1.5978 6.5599 43 1 2.0541 -0.7406 -3.2088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314002670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:49 Heat of formation + Delta-G solvation = -194.071091 kcal Electronic energy + Delta-G solvation = -27718.363503 eV Core-core repulsion = 23660.353710 eV Total energy + Delta-G solvation = -4058.009793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.61950 -39.35261 -38.45343 -38.02989 -37.05783 -36.76282 -35.77747 -35.27476 -32.03461 -31.25809 -29.39752 -28.32721 -27.59002 -25.98630 -23.79867 -23.25258 -22.90750 -20.67374 -20.10872 -19.39213 -18.87369 -18.62219 -18.05857 -17.73712 -17.18469 -16.79505 -16.72577 -15.96714 -15.83619 -15.72552 -15.17562 -14.99825 -14.84611 -14.51376 -14.20578 -14.07047 -13.92316 -13.59529 -13.55296 -13.11704 -13.07925 -12.99461 -12.92962 -12.86825 -12.86296 -12.57361 -12.54652 -12.47932 -12.33290 -11.99966 -11.92868 -11.88882 -11.51259 -11.31957 -11.28860 -11.19141 -10.30476 -9.75966 -9.51667 -8.84802 -6.62073 -0.28172 0.51579 1.09150 1.18555 1.37934 1.46055 1.51109 2.03418 2.13417 2.30643 2.56105 2.96136 3.51161 3.58227 3.64528 3.75380 3.83006 4.14687 4.26359 4.33990 4.36050 4.36819 4.56648 4.63602 4.77721 4.88169 4.89561 4.91568 4.97328 4.98142 5.00398 5.12994 5.21910 5.27300 5.34206 5.36109 5.55390 5.60250 5.62623 5.79639 5.95945 6.17567 6.20467 6.51864 6.71252 6.83997 6.99456 8.09975 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003441 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.767294 B = 8135.078526 C =10067.364751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C -0.150 4.150 4 C -0.102 4.102 5 C 0.112 3.888 6 N -1.112 6.112 7 S 2.726 3.274 8 O -1.004 7.004 9 O -1.000 7.000 10 C -0.796 4.796 11 C -0.018 4.018 12 C -0.205 4.205 13 C 0.112 3.888 14 C -0.468 4.468 15 H 0.088 0.912 16 C 0.038 3.962 17 N -0.790 5.790 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.257 1.257 22 C -0.259 4.259 23 C -0.002 4.002 24 C 0.497 3.503 25 O -0.548 6.548 26 O -0.506 6.506 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.423 0.577 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.299 0.701 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -0.882 -12.840 13.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.051 4.051 3 C -0.207 4.207 4 C -0.142 4.142 5 C -0.014 4.014 6 N -0.873 5.873 7 S 2.822 3.178 8 O -0.995 6.995 9 O -0.990 6.990 10 C -0.889 4.889 11 C -0.038 4.038 12 C -0.225 4.225 13 C 0.109 3.891 14 C -0.495 4.495 15 H 0.106 0.894 16 C -0.182 4.182 17 N -0.413 5.413 18 Si 0.807 3.193 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.181 1.181 22 C -0.280 4.280 23 C -0.022 4.022 24 C 0.340 3.660 25 O -0.438 6.438 26 O -0.319 6.319 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.259 0.741 38 H 0.138 0.862 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.141 0.859 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 5.531 -0.369 -12.222 13.420 hybrid contribution -1.038 -0.714 -0.345 1.307 sum 4.492 -1.083 -12.567 13.390 Atomic orbital electron populations 1.22001 0.90678 1.03306 1.04595 1.20449 0.98556 0.97302 0.88838 1.22028 1.01896 0.91983 1.04771 1.21632 1.02107 0.99693 0.90721 1.21532 0.99599 0.96706 0.83558 1.55298 1.78923 1.30361 1.22702 1.00243 0.73598 0.72090 0.71891 1.93462 1.80182 1.64698 1.61133 1.93458 1.78149 1.41221 1.86206 1.29607 1.25007 1.06664 1.27651 1.20469 0.94236 0.94225 0.94845 1.21351 0.93657 1.00359 1.07156 1.18180 0.93513 0.89986 0.87430 1.20194 0.94562 1.22486 1.12219 0.89354 1.26910 1.04107 0.93494 0.93663 1.69816 1.39094 1.24443 1.07954 0.85153 0.75745 0.79123 0.79284 1.18503 1.18604 1.18082 1.21266 0.95748 0.98997 1.11951 1.20439 0.93784 0.95887 0.92088 1.23465 0.75718 0.81376 0.85433 1.90711 1.37593 1.27701 1.87844 1.84494 1.71775 1.58886 1.16728 0.90344 0.89959 0.92078 0.91555 0.89847 0.90036 0.90057 0.90243 0.90948 0.89658 0.74109 0.86249 0.86899 0.88959 0.87384 0.85931 0.71168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.05 71.98 0.58 -2.14 16 2 C -0.05 -0.92 0.74 -52.93 -0.04 -0.96 16 3 C -0.15 -2.44 8.05 71.98 0.58 -1.86 16 4 C -0.10 -2.16 3.70 30.60 0.11 -2.05 16 5 C 0.11 2.77 5.52 86.38 0.48 3.24 16 6 N -1.11 -30.68 6.00 -187.48 -1.12 -31.81 16 7 S 2.73 99.09 5.73 -56.49 -0.32 98.77 16 8 O -1.00 -40.60 17.26 -128.00 -2.21 -42.81 16 9 O -1.00 -40.12 16.72 -128.00 -2.14 -42.26 16 10 C -0.80 -33.65 5.97 22.46 0.13 -33.51 16 11 C -0.02 -0.79 9.49 22.22 0.21 -0.58 16 12 C -0.20 -10.09 8.70 22.73 0.20 -9.90 16 13 C 0.11 5.69 5.57 -21.29 -0.12 5.57 16 14 C -0.47 -22.91 9.05 23.46 0.21 -22.70 16 15 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 16 C 0.04 1.72 5.14 85.26 0.44 2.15 16 17 N -0.79 -36.29 10.95 21.83 0.24 -36.05 16 18 Si 0.99 33.62 29.60 68.60 2.03 35.65 16 19 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 20 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 21 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 22 C -0.26 -12.23 9.80 22.73 0.22 -12.01 16 23 C 0.00 -0.10 9.49 22.22 0.21 0.12 16 24 C 0.50 9.69 6.92 71.24 0.49 10.19 16 25 O -0.55 -14.07 16.74 21.96 0.37 -13.71 16 26 O -0.51 -6.86 13.23 -51.36 -0.68 -7.54 16 27 H 0.08 1.55 6.43 -2.39 -0.02 1.54 16 28 H 0.08 1.30 8.11 -2.38 -0.02 1.29 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.16 8.11 -2.38 -0.02 1.14 16 32 H 0.08 1.36 6.43 -2.39 -0.02 1.35 16 33 H 0.08 1.70 8.10 -2.39 -0.02 1.68 16 34 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.07 1.86 6.43 -2.39 -0.02 1.84 16 36 H 0.09 2.07 6.03 -2.39 -0.01 2.05 16 37 H 0.42 9.69 8.65 -96.75 -0.84 8.86 16 38 H 0.12 4.78 7.59 -2.91 -0.02 4.76 16 39 H 0.11 5.66 6.16 -2.91 -0.02 5.64 16 40 H 0.30 12.17 8.30 -92.71 -0.77 11.40 16 41 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.12 4.78 7.60 -2.91 -0.02 4.76 16 43 H 0.43 2.23 9.10 -74.05 -0.67 1.55 16 Total: -1.00 -66.73 371.14 -0.57 -67.30 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: -0.45 Total: 36.89 kcal Atomic # 6 Polarization: -68.14 SS G_CDS: 3.71 Total: -64.43 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -0.89 Total: -67.86 kcal Atomic # 8 Polarization: -101.66 SS G_CDS: -4.66 Total: -106.32 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Atomic # 16 Polarization: 99.09 SS G_CDS: -0.32 Total: 98.77 kcal Total: -66.73 -0.57 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314002670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.770 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds