Wall clock time and date at job start Tue Mar 31 2020 23:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 S 1.76201 * 119.92953 * 180.30076 * 9 8 7 11 11 O 1.42095 * 106.39825 * 23.78839 * 10 9 8 12 12 O 1.42103 * 106.40275 * 156.71139 * 10 9 8 13 13 N 1.65605 * 107.21755 * 270.25183 * 10 9 8 14 14 C 1.46502 * 119.99934 * 64.99777 * 13 10 9 15 15 C 1.53000 * 109.46878 * 164.99999 * 14 13 10 16 16 C 1.52994 * 109.47223 * 300.00125 * 15 14 13 17 17 C 1.53009 * 109.47036 * 60.00098 * 15 14 13 18 18 C 1.50697 * 109.46782 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00013 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99725 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00093 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99997 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47003 * 90.00284 * 22 20 18 24 24 H 1.48498 * 109.47115 * 210.00248 * 22 20 18 25 25 H 1.48504 * 109.47040 * 330.00631 * 22 20 18 26 26 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 27 27 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 28 28 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 33 33 H 0.96998 * 119.99436 * 244.99968 * 13 10 9 34 34 H 1.08998 * 109.46927 * 284.99691 * 14 13 10 35 35 H 1.08995 * 109.47200 * 44.99992 * 14 13 10 36 36 H 1.08998 * 109.47587 * 59.99692 * 16 15 14 37 37 H 1.09002 * 109.47324 * 180.02562 * 16 15 14 38 38 H 1.09007 * 109.46918 * 299.99658 * 16 15 14 39 39 H 1.08992 * 109.46757 * 59.99715 * 17 15 14 40 40 H 1.08994 * 109.46369 * 180.02562 * 17 15 14 41 41 H 1.08998 * 109.46703 * 299.99652 * 17 15 14 42 42 H 0.97004 * 120.00297 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07576 * 179.75004 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 16 6.3602 4.1516 0.0002 11 8 7.6550 3.9364 -0.5441 12 8 5.4325 5.0800 -0.5446 13 7 6.5844 4.5880 1.5819 14 6 7.4717 3.7996 2.4406 15 6 7.7993 4.5973 3.7044 16 6 8.4936 5.9044 3.3168 17 6 6.5058 4.9112 4.4590 18 6 8.7115 3.7861 4.5880 19 1 9.0264 2.8003 4.2788 20 6 9.1449 4.3027 5.7906 21 7 8.7618 5.5032 6.1668 22 14 10.2763 3.2974 6.8856 23 1 11.6899 3.5873 6.5354 24 1 10.0352 3.6543 8.3067 25 1 10.0030 1.8516 6.6849 26 6 4.1759 2.5199 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8159 -0.8558 0.0006 31 1 6.2712 -0.7157 0.0010 32 1 7.3829 1.4790 0.0110 33 1 6.1281 5.3657 1.9397 34 1 6.9769 2.8685 2.7167 35 1 8.3931 3.5760 1.9030 36 1 7.8335 6.4910 2.6779 37 1 8.7275 6.4725 4.2173 38 1 9.4152 5.6807 2.7793 39 1 6.0112 3.9800 4.7350 40 1 6.7392 5.4798 5.3591 41 1 5.8457 5.4978 3.8201 42 1 9.0664 5.8666 7.0131 43 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416533708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:06 Heat of formation + Delta-G solvation = -134.708029 kcal Electronic energy + Delta-G solvation = -27812.276093 eV Core-core repulsion = 23756.840476 eV Total energy + Delta-G solvation = -4055.435617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86310 -39.07815 -37.17967 -36.81631 -36.71339 -35.67394 -33.26225 -32.06175 -31.52892 -30.56478 -28.11517 -25.70532 -25.56926 -24.61317 -24.45523 -23.47709 -21.44029 -19.57653 -18.98480 -18.47779 -17.52251 -17.38356 -16.67202 -16.44833 -16.19973 -15.90200 -15.75147 -15.11512 -14.71982 -14.41581 -14.01187 -13.93752 -13.88258 -13.53017 -13.16090 -12.94352 -12.61556 -12.48846 -12.26295 -12.02624 -11.94493 -11.84042 -11.75954 -11.50663 -11.14883 -11.14600 -11.03761 -10.93383 -10.75919 -10.68784 -10.41473 -10.19182 -9.77926 -9.66521 -9.44305 -9.36425 -8.89453 -8.79642 -8.38771 -6.03046 -4.14226 0.21938 0.54378 0.73869 2.13631 2.30465 3.12953 3.26296 3.33776 3.35135 3.40600 3.90715 4.25164 4.33847 4.37342 4.60520 4.63402 4.76933 4.83049 4.85630 5.07294 5.16723 5.23542 5.25044 5.46590 5.67997 5.73010 5.79116 5.85881 5.99824 6.14087 6.36810 6.40582 6.46587 6.74422 6.89878 6.99138 7.04767 7.33178 7.39232 7.47850 7.58175 7.68551 8.02543 8.13766 8.37591 8.85971 9.51685 10.98053 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.003173 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.144310 B = 8821.048993 C = 9533.718821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.499 6.499 5 C -0.151 4.151 6 C -0.013 4.013 7 C -0.151 4.151 8 C 0.019 3.981 9 C -0.684 4.684 10 S 2.692 3.308 11 O -0.955 6.955 12 O -0.966 6.966 13 N -1.104 6.104 14 C 0.126 3.874 15 C 0.064 3.936 16 C -0.133 4.133 17 C -0.133 4.133 18 C -0.509 4.509 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.046 3.954 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.151 0.849 33 H 0.419 0.581 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.011 0.989 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.026 0.974 40 H 0.086 0.914 41 H 0.009 0.991 42 H 0.260 0.740 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 -11.489 -11.496 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.387 6.387 5 C -0.153 4.153 6 C -0.031 4.031 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.768 4.768 10 S 2.779 3.221 11 O -0.945 6.945 12 O -0.956 6.956 13 N -0.868 5.868 14 C 0.001 3.999 15 C 0.062 3.938 16 C -0.191 4.191 17 C -0.190 4.190 18 C -0.548 4.548 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.522 5.522 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C 0.027 3.973 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.256 0.744 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.220 -10.785 -12.149 19.743 hybrid contribution -0.183 -0.898 1.168 1.485 sum -11.403 -11.683 -10.980 19.674 Atomic orbital electron populations 1.23316 0.75616 1.03875 1.02885 1.86518 1.23851 1.32473 1.84430 1.21083 0.88877 0.81628 0.72885 1.90872 1.66612 1.35907 1.45350 1.19132 0.89312 0.95094 1.11801 1.21752 0.94138 0.98034 0.89225 1.21339 0.94424 0.98447 1.02750 1.21348 1.00975 0.91146 0.86578 1.31316 1.04453 1.22976 1.18070 1.02003 0.73776 0.73159 0.73206 1.93586 1.38018 1.85893 1.76958 1.93578 1.64649 1.60205 1.77147 1.55461 1.60106 1.40785 1.30417 1.21711 0.91163 0.93670 0.93372 1.18254 0.93691 0.92833 0.88973 1.21832 0.97798 0.98634 1.00831 1.21843 0.95972 0.99309 1.01919 1.20997 1.28761 1.01885 1.03178 0.92425 1.24885 0.96054 0.94949 0.97588 1.69809 1.44579 1.15733 1.22060 0.86592 0.81117 0.80456 0.79778 1.20699 1.21324 1.19971 1.21011 0.92489 0.97894 0.85908 0.91582 0.91688 0.87836 0.83728 0.83874 0.83136 0.74391 0.93057 0.91286 0.97043 0.89719 0.95287 0.95458 0.89559 0.97224 0.92967 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.54 9.82 -40.51 -0.40 -3.93 16 3 C 0.51 6.34 7.90 34.60 0.27 6.62 16 4 O -0.50 -7.47 16.14 -19.24 -0.31 -7.78 16 5 C -0.15 -1.83 5.87 -104.99 -0.62 -2.44 16 6 C -0.01 -0.13 9.62 -39.17 -0.38 -0.50 16 7 C -0.15 -1.41 10.03 -39.64 -0.40 -1.81 16 8 C 0.02 0.22 9.52 -39.49 -0.38 -0.16 16 9 C -0.68 -9.18 5.94 -39.64 -0.24 -9.41 16 10 S 2.69 41.74 5.73 -107.50 -0.62 41.13 16 11 O -0.95 -16.77 16.75 -57.17 -0.96 -17.73 16 12 O -0.97 -16.77 17.27 -57.17 -0.99 -17.75 16 13 N -1.10 -18.10 5.33 -10.61 -0.06 -18.16 16 14 C 0.13 2.34 5.05 -4.04 -0.02 2.32 16 15 C 0.06 1.44 0.51 -155.66 -0.08 1.36 16 16 C -0.13 -3.01 8.08 37.15 0.30 -2.71 16 17 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 18 C -0.51 -12.72 8.01 -34.44 -0.28 -13.00 16 19 H 0.06 1.41 7.74 -52.49 -0.41 1.00 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.88 -23.21 9.35 55.43 0.52 -22.69 16 22 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.05 0.62 9.07 -39.17 -0.36 0.27 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.14 1.00 7.61 -52.49 -0.40 0.60 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.15 1.58 7.61 -52.49 -0.40 1.18 16 33 H 0.42 6.66 6.47 -34.47 -0.22 6.43 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.28 7.75 -51.93 -0.40 0.88 16 36 H 0.01 0.22 7.20 -51.93 -0.37 -0.16 16 37 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 38 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.01 0.17 6.60 -51.93 -0.34 -0.17 16 42 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 43 H 0.15 2.10 7.20 -52.49 -0.38 1.72 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -31.66 370.18 -8.78 -40.44 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.65 Total: 4.97 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.88 Total: -19.14 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.46 Total: -40.85 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -2.65 Total: -47.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 41.74 SS G_CDS: -0.62 Total: 41.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.66 -8.78 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416533708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.268 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds