Wall clock time and date at job start Tue Mar 31 2020 23:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34709 * 117.00180 * 2 1 4 4 O 1.21470 * 119.99931 * 359.97438 * 3 2 1 5 5 C 1.47717 * 120.00323 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14876 * 0.02562 * 5 3 2 7 7 C 1.37929 * 119.84941 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.14825 * 0.27872 * 7 6 5 9 9 C 1.38345 * 120.30474 * 359.44560 * 8 7 6 10 10 S 1.76201 * 119.92953 * 180.30076 * 9 8 7 11 11 O 1.42095 * 106.39825 * 23.78839 * 10 9 8 12 12 O 1.42103 * 106.40275 * 156.71139 * 10 9 8 13 13 N 1.65605 * 107.21755 * 270.25183 * 10 9 8 14 14 C 1.46502 * 119.99934 * 64.99777 * 13 10 9 15 15 C 1.53000 * 109.46878 * 164.99999 * 14 13 10 16 16 C 1.52994 * 109.47223 * 300.00125 * 15 14 13 17 17 C 1.53009 * 109.47036 * 60.00098 * 15 14 13 18 18 C 1.50697 * 109.46782 * 179.97438 * 15 14 13 19 19 H 1.08000 * 120.00013 * 0.02562 * 18 15 14 20 20 C 1.37878 * 119.99725 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00093 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99997 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47003 * 90.00284 * 22 20 18 24 24 H 1.48498 * 109.47115 * 210.00248 * 22 20 18 25 25 H 1.48504 * 109.47040 * 330.00631 * 22 20 18 26 26 C 1.37975 * 120.14878 * 0.55131 * 9 8 7 27 27 H 1.09000 * 109.47179 * 299.99893 * 1 2 3 28 28 H 1.08997 * 109.46840 * 60.00432 * 1 2 3 29 29 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.07600 * 359.97438 * 6 5 3 31 31 H 1.08002 * 119.92294 * 179.97438 * 7 6 5 32 32 H 1.08000 * 119.84887 * 179.71713 * 8 7 6 33 33 H 0.96998 * 119.99436 * 244.99968 * 13 10 9 34 34 H 1.08998 * 109.46927 * 284.99691 * 14 13 10 35 35 H 1.08995 * 109.47200 * 44.99992 * 14 13 10 36 36 H 1.08998 * 109.47587 * 59.99692 * 16 15 14 37 37 H 1.09002 * 109.47324 * 180.02562 * 16 15 14 38 38 H 1.09007 * 109.46918 * 299.99658 * 16 15 14 39 39 H 1.08992 * 109.46757 * 59.99715 * 17 15 14 40 40 H 1.08994 * 109.46369 * 180.02562 * 17 15 14 41 41 H 1.08998 * 109.46703 * 299.99652 * 17 15 14 42 42 H 0.97004 * 120.00297 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07576 * 179.75004 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1878 0.0006 8 6 6.3044 1.4225 0.0064 9 6 5.5541 2.5848 0.0007 10 16 6.3602 4.1516 0.0002 11 8 7.6550 3.9364 -0.5441 12 8 5.4325 5.0800 -0.5446 13 7 6.5844 4.5880 1.5819 14 6 7.4717 3.7996 2.4406 15 6 7.7993 4.5973 3.7044 16 6 8.4936 5.9044 3.3168 17 6 6.5058 4.9112 4.4590 18 6 8.7115 3.7861 4.5880 19 1 9.0264 2.8003 4.2788 20 6 9.1449 4.3027 5.7906 21 7 8.7618 5.5032 6.1668 22 14 10.2763 3.2974 6.8856 23 1 11.6899 3.5873 6.5354 24 1 10.0352 3.6543 8.3067 25 1 10.0030 1.8516 6.6849 26 6 4.1759 2.5199 0.0006 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8159 -0.8558 0.0006 31 1 6.2712 -0.7157 0.0010 32 1 7.3829 1.4790 0.0110 33 1 6.1281 5.3657 1.9397 34 1 6.9769 2.8685 2.7167 35 1 8.3931 3.5760 1.9030 36 1 7.8335 6.4910 2.6779 37 1 8.7275 6.4725 4.2173 38 1 9.4152 5.6807 2.7793 39 1 6.0112 3.9800 4.7350 40 1 6.7392 5.4798 5.3591 41 1 5.8457 5.4978 3.8201 42 1 9.0664 5.8666 7.0131 43 1 3.5913 3.4279 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416533708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:05 Heat of formation + Delta-G solvation = -155.145043 kcal Electronic energy + Delta-G solvation = -27813.162309 eV Core-core repulsion = 23756.840476 eV Total energy + Delta-G solvation = -4056.321833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74719 -39.93846 -38.67729 -38.27820 -37.60435 -37.00176 -34.92577 -32.95797 -32.40654 -32.30748 -28.75564 -27.50098 -27.36810 -26.23453 -25.35632 -24.38929 -22.31132 -20.79721 -20.59636 -19.61289 -18.72943 -18.40032 -17.61936 -17.49674 -17.34728 -17.19512 -17.08650 -16.57686 -16.05546 -15.49733 -15.13646 -15.06929 -14.87675 -14.73672 -14.63752 -14.03633 -13.88501 -13.47329 -13.39993 -13.31194 -13.27146 -13.19452 -13.10477 -12.90398 -12.79764 -12.71719 -12.48065 -12.24789 -12.05978 -12.00115 -11.89323 -11.74650 -11.44036 -11.09195 -10.66961 -10.62978 -10.39633 -10.30715 -10.20614 -7.95286 -6.11603 -0.72859 -0.57296 -0.22155 1.24300 1.47555 1.50640 1.51565 1.57662 2.00126 2.39615 2.51146 2.71490 3.24265 3.28985 3.50067 3.66137 3.86920 3.95920 4.19510 4.24797 4.27430 4.31317 4.36880 4.60330 4.64673 4.69469 4.77506 4.81460 4.84676 4.98400 5.06378 5.10723 5.15236 5.17823 5.26996 5.28421 5.55254 5.56726 5.73361 5.74148 6.07953 6.20706 6.30652 6.49342 6.51281 6.95941 7.56447 9.03613 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.003173 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.144310 B = 8821.048993 C = 9533.718821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.512 3.488 4 O -0.535 6.535 5 C -0.164 4.164 6 C 0.002 3.998 7 C -0.138 4.138 8 C 0.008 3.992 9 C -0.689 4.689 10 S 2.708 3.292 11 O -0.978 6.978 12 O -0.989 6.989 13 N -1.106 6.106 14 C 0.136 3.864 15 C 0.054 3.946 16 C -0.128 4.128 17 C -0.125 4.125 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.022 3.978 21 N -0.905 5.905 22 Si 0.946 3.054 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.267 1.267 26 C 0.029 3.971 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.161 0.839 33 H 0.420 0.580 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.022 0.978 39 H 0.027 0.973 40 H 0.057 0.943 41 H 0.031 0.969 42 H 0.257 0.743 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -14.629 -12.111 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.358 3.642 4 O -0.426 6.426 5 C -0.166 4.166 6 C -0.016 4.016 7 C -0.156 4.156 8 C -0.011 4.011 9 C -0.777 4.777 10 S 2.799 3.201 11 O -0.968 6.968 12 O -0.979 6.979 13 N -0.869 5.869 14 C 0.010 3.990 15 C 0.053 3.947 16 C -0.186 4.186 17 C -0.183 4.183 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.177 4.177 21 N -0.544 5.544 22 Si 0.773 3.227 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.191 1.191 26 C 0.009 3.991 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.158 0.842 30 H 0.196 0.804 31 H 0.201 0.799 32 H 0.178 0.822 33 H 0.257 0.743 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.585 -13.909 -12.766 22.151 hybrid contribution -0.150 -0.018 1.313 1.322 sum -11.735 -13.928 -11.453 21.514 Atomic orbital electron populations 1.23648 0.73916 1.06206 1.02696 1.86505 1.25461 1.30876 1.83723 1.21223 0.89096 0.81831 0.72018 1.90855 1.67381 1.37191 1.47202 1.19246 0.89460 0.95489 1.12387 1.22161 0.94246 0.98364 0.86812 1.21786 0.94560 0.98839 1.00455 1.21657 1.01580 0.91442 0.86467 1.30776 1.04348 1.22055 1.20534 1.01187 0.73030 0.73480 0.72357 1.93549 1.39459 1.86477 1.77273 1.93545 1.65057 1.61929 1.77377 1.55357 1.60072 1.41058 1.30385 1.21454 0.91810 0.93744 0.91980 1.18292 0.93327 0.92734 0.90386 1.21738 0.98040 0.99031 0.99800 1.21710 0.96334 0.99202 1.01093 1.21379 1.28927 1.02215 1.03578 0.92213 1.25533 0.97419 0.95798 0.98938 1.69954 1.45483 1.16827 1.22131 0.85753 0.79345 0.79629 0.78011 1.20861 1.21690 1.19107 1.20967 0.92536 0.98391 0.87207 0.91995 0.91785 0.84205 0.80411 0.79883 0.82158 0.74269 0.91536 0.91322 0.95184 0.92327 0.95928 0.95377 0.92404 0.95017 0.93381 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.12 9.82 -56.18 -0.55 -6.67 16 3 C 0.51 12.15 7.90 70.33 0.56 12.70 16 4 O -0.54 -16.12 16.14 19.93 0.32 -15.79 16 5 C -0.16 -3.67 5.87 -20.10 -0.12 -3.79 16 6 C 0.00 0.03 9.62 22.54 0.22 0.25 16 7 C -0.14 -2.00 10.03 22.23 0.22 -1.77 16 8 C 0.01 0.16 9.52 22.33 0.21 0.37 16 9 C -0.69 -17.77 5.94 22.23 0.13 -17.64 16 10 S 2.71 83.42 5.73 -56.49 -0.32 83.10 16 11 O -0.98 -33.93 16.75 -128.00 -2.14 -36.07 16 12 O -0.99 -34.84 17.27 -128.00 -2.21 -37.05 16 13 N -1.11 -35.68 5.33 -187.49 -1.00 -36.68 16 14 C 0.14 4.90 5.05 86.38 0.44 5.34 16 15 C 0.05 2.41 0.51 -52.93 -0.03 2.38 16 16 C -0.13 -5.84 8.08 71.98 0.58 -5.26 16 17 C -0.13 -5.48 8.08 71.99 0.58 -4.89 16 18 C -0.52 -25.86 8.01 25.60 0.21 -25.65 16 19 H 0.06 2.86 7.74 -2.91 -0.02 2.84 16 20 C 0.02 1.14 5.15 84.66 0.44 1.58 16 21 N -0.90 -48.26 9.35 21.45 0.20 -48.06 16 22 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C 0.03 0.76 9.07 22.54 0.20 0.96 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.18 1.53 7.61 -2.91 -0.02 1.51 16 31 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.16 2.95 7.61 -2.91 -0.02 2.92 16 33 H 0.42 13.20 6.47 -96.75 -0.63 12.58 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.48 7.75 -2.39 -0.02 2.46 16 36 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 37 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 38 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 41 H 0.03 1.19 6.60 -2.39 -0.02 1.18 16 42 H 0.26 13.31 8.31 -92.70 -0.77 12.54 16 43 H 0.14 3.99 7.20 -2.91 -0.02 3.97 16 Total: -1.00 -68.90 370.18 1.57 -67.33 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.42 Total: 20.71 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 4.84 Total: -33.89 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -0.80 Total: -84.74 kcal Atomic # 8 Polarization: -91.00 SS G_CDS: -4.58 Total: -95.59 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 16 Polarization: 83.42 SS G_CDS: -0.32 Total: 83.10 kcal Total: -68.90 1.57 -67.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416533708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.813 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds