Wall clock time and date at job start Tue Mar 31 2020 23:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34712 * 116.99828 * 2 1 4 4 O 1.21466 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.47724 * 119.99508 * 180.02562 * 3 2 1 6 6 C 1.39641 * 120.15251 * 359.97393 * 5 3 2 7 7 C 1.37920 * 119.84772 * 180.02562 * 6 5 3 8 8 C 1.38395 * 120.15232 * 359.72709 * 7 6 5 9 9 C 1.38351 * 120.29961 * 0.55291 * 8 7 6 10 10 C 1.50697 * 119.92531 * 179.72474 * 9 8 7 11 11 S 1.81401 * 109.46758 * 269.72327 * 10 9 8 12 12 O 1.42101 * 110.54202 * 68.37618 * 11 10 9 13 13 O 1.42093 * 110.54535 * 291.62347 * 11 10 9 14 14 N 1.65606 * 104.44760 * 180.02562 * 11 10 9 15 15 C 1.46503 * 119.99732 * 269.99885 * 14 11 10 16 16 C 1.46497 * 120.00019 * 89.99597 * 14 11 10 17 17 H 1.08993 * 109.47082 * 0.02562 * 16 14 11 18 18 C 1.53006 * 109.46700 * 120.00261 * 16 14 11 19 19 C 1.50687 * 109.47444 * 240.00081 * 16 14 11 20 20 H 1.08004 * 120.00410 * 356.62509 * 19 16 14 21 21 C 1.37877 * 120.00251 * 176.62943 * 19 16 14 22 22 N 1.31516 * 120.00066 * 351.52505 * 21 19 16 23 23 Si 1.86807 * 120.00330 * 171.80988 * 21 19 16 24 24 H 1.48505 * 109.46545 * 264.97259 * 23 21 19 25 25 H 1.48496 * 109.46790 * 24.97002 * 23 21 19 26 26 H 1.48495 * 109.47372 * 144.97211 * 23 21 19 27 27 C 1.37968 * 120.14422 * 359.44548 * 9 8 7 28 28 H 1.09007 * 109.47302 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47460 * 300.00163 * 1 2 3 30 30 H 1.08997 * 109.47405 * 60.00352 * 1 2 3 31 31 H 1.08000 * 120.07876 * 359.97438 * 6 5 3 32 32 H 1.07999 * 119.92959 * 180.02562 * 7 6 5 33 33 H 1.07998 * 119.84981 * 180.26881 * 8 7 6 34 34 H 1.08992 * 109.47126 * 149.72260 * 10 9 8 35 35 H 1.08999 * 109.46858 * 29.72169 * 10 9 8 36 36 H 1.09001 * 109.47202 * 269.99912 * 15 14 11 37 37 H 1.09003 * 109.47187 * 30.00591 * 15 14 11 38 38 H 1.09001 * 109.46679 * 149.99964 * 15 14 11 39 39 H 1.08995 * 109.46771 * 185.90526 * 18 16 14 40 40 H 1.09008 * 109.47169 * 305.90190 * 18 16 14 41 41 H 1.08992 * 109.47369 * 65.90182 * 18 16 14 42 42 H 0.96998 * 120.00304 * 180.27649 * 22 21 19 43 43 H 1.08008 * 120.06747 * 180.25517 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.3024 0.1084 -0.0006 7 6 5.6793 0.1878 -0.0006 8 6 6.3043 1.4226 -0.0063 9 6 5.5539 2.5849 -0.0005 10 6 6.2434 3.9249 -0.0005 11 16 6.5200 4.4625 1.7098 12 8 7.4845 3.6332 2.3433 13 8 5.2847 4.7651 2.3434 14 7 7.2741 5.9297 1.5649 15 6 8.7361 5.9986 1.5006 16 6 6.4793 7.1586 1.5009 17 1 5.4200 6.9099 1.5634 18 6 6.8580 8.0722 2.6684 19 6 6.7534 7.8670 0.1994 20 1 7.4902 7.4732 -0.4851 21 6 6.0638 9.0181 -0.1176 22 7 5.0541 9.4068 0.6302 23 14 6.5585 10.0214 -1.6137 24 1 7.4780 11.1106 -1.1971 25 1 7.2446 9.1423 -2.5942 26 1 5.3463 10.6087 -2.2388 27 6 4.1758 2.5198 -0.0005 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8159 -0.8558 0.0003 32 1 6.2711 -0.7155 -0.0010 33 1 7.3828 1.4790 -0.0106 34 1 5.6183 4.6551 -0.5143 35 1 7.2010 3.8407 -0.5143 36 1 9.1399 6.0957 2.5084 37 1 9.1228 5.0895 1.0401 38 1 9.0332 6.8621 0.9054 39 1 6.1955 8.9376 2.6821 40 1 6.7592 7.5241 3.6055 41 1 7.8888 8.4055 2.5494 42 1 4.5664 10.2144 0.4049 43 1 3.5912 3.4280 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128133621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:13 Heat of formation + Delta-G solvation = -127.114703 kcal Electronic energy + Delta-G solvation = -27855.135319 eV Core-core repulsion = 23800.028973 eV Total energy + Delta-G solvation = -4055.106346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72608 -39.15571 -36.63180 -36.56329 -36.20368 -35.37004 -33.32348 -32.61184 -31.51922 -29.20907 -28.22002 -27.28478 -25.53663 -25.18615 -24.30114 -22.16197 -21.00902 -20.70240 -18.34332 -17.84839 -17.30414 -17.00538 -16.52092 -16.44156 -16.23927 -15.92205 -15.68169 -15.16306 -14.63735 -14.57852 -13.78978 -13.72030 -13.56149 -13.45588 -13.19348 -12.74581 -12.69942 -12.55173 -12.33575 -12.01054 -11.91576 -11.84436 -11.57926 -11.47293 -11.40817 -11.22181 -11.04248 -11.00488 -10.86347 -10.85969 -10.66882 -10.45235 -10.28427 -10.05622 -9.38333 -9.26583 -8.91434 -8.49011 -7.96621 -6.15009 -4.21468 0.42048 0.67569 1.22323 2.37505 2.45691 3.22568 3.26304 3.31285 3.33829 3.54777 4.17587 4.33089 4.43293 4.49492 4.53124 4.72445 4.87022 4.90562 4.97460 5.04900 5.13823 5.17073 5.24043 5.36085 5.44526 5.57083 5.69779 5.84796 6.01610 6.05283 6.14106 6.15974 6.26712 6.29205 6.58533 6.61810 6.80542 6.82251 7.05758 7.38674 7.56985 7.59097 7.72784 7.91945 8.19583 8.81598 9.44502 10.92091 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.003439 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.998234 B = 8140.054928 C = 9234.286794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.508 3.492 4 O -0.495 6.495 5 C -0.126 4.126 6 C -0.061 4.061 7 C -0.131 4.131 8 C -0.072 4.072 9 C -0.091 4.091 10 C -0.597 4.597 11 S 2.603 3.397 12 O -0.969 6.969 13 O -0.948 6.948 14 N -0.982 5.982 15 C 0.104 3.896 16 C 0.263 3.737 17 H 0.067 0.933 18 C -0.137 4.137 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.068 3.932 22 N -0.882 5.882 23 Si 0.893 3.107 24 H -0.280 1.280 25 H -0.274 1.274 26 H -0.286 1.286 27 C -0.041 4.041 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.017 0.983 41 H 0.036 0.964 42 H 0.265 0.735 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 -18.554 -3.010 18.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.352 3.648 4 O -0.383 6.383 5 C -0.127 4.127 6 C -0.080 4.080 7 C -0.149 4.149 8 C -0.091 4.091 9 C -0.093 4.093 10 C -0.721 4.721 11 S 2.696 3.304 12 O -0.959 6.959 13 O -0.938 6.938 14 N -0.821 5.821 15 C -0.042 4.042 16 C 0.160 3.840 17 H 0.084 0.916 18 C -0.197 4.197 19 C -0.577 4.577 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.519 5.519 23 Si 0.721 3.279 24 H -0.206 1.206 25 H -0.199 1.199 26 H -0.212 1.212 27 C -0.060 4.060 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.170 0.830 35 H 0.158 0.842 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.071 -18.518 -2.199 18.679 hybrid contribution 0.109 0.947 -1.667 1.920 sum -0.962 -17.571 -3.866 18.017 Atomic orbital electron populations 1.23296 0.75852 1.03700 1.02889 1.86517 1.23661 1.32617 1.84565 1.21160 0.89041 0.81546 0.73025 1.90886 1.66599 1.35893 1.44938 1.19022 0.89136 0.94765 1.09790 1.21508 0.93970 0.97870 0.94616 1.21155 0.94317 0.97927 1.01468 1.21512 1.00912 0.91735 0.94948 1.19050 0.93078 0.93377 1.03813 1.29888 1.10027 1.02687 1.29530 1.05218 0.74426 0.73736 0.77057 1.93522 1.61245 1.69012 1.72169 1.93589 1.45582 1.82997 1.71618 1.57487 1.14038 1.22314 1.88293 1.21240 0.79818 1.01975 1.01215 1.18802 0.91132 0.79277 0.94756 0.91566 1.21960 1.00695 1.00929 0.96109 1.21383 1.23040 1.09622 1.03615 0.91750 1.24934 0.94335 0.97494 0.96799 1.69952 1.18662 1.24147 1.39104 0.86576 0.78175 0.80515 0.82679 1.20580 1.19871 1.21179 1.21375 0.93830 0.97784 0.92981 0.87967 0.91631 0.91737 0.84118 0.84459 0.84403 0.83034 0.84227 0.93583 0.93097 0.90125 0.90476 0.96354 0.94514 0.92518 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.99 9.82 -40.53 -0.40 -4.39 16 3 C 0.51 7.14 7.90 34.61 0.27 7.41 16 4 O -0.50 -8.44 16.14 -19.24 -0.31 -8.75 16 5 C -0.13 -1.70 5.87 -104.99 -0.62 -2.32 16 6 C -0.06 -0.64 9.62 -39.17 -0.38 -1.02 16 7 C -0.13 -1.29 10.03 -39.64 -0.40 -1.68 16 8 C -0.07 -0.85 9.69 -39.48 -0.38 -1.23 16 9 C -0.09 -1.31 5.13 -104.68 -0.54 -1.85 16 10 C -0.60 -8.95 6.30 36.00 0.23 -8.72 16 11 S 2.60 49.47 5.35 -107.50 -0.57 48.89 16 12 O -0.97 -18.91 17.09 -57.54 -0.98 -19.90 16 13 O -0.95 -21.50 16.57 -57.54 -0.95 -22.46 16 14 N -0.98 -19.81 2.99 -115.86 -0.35 -20.16 16 15 C 0.10 1.77 9.31 59.85 0.56 2.32 16 16 C 0.26 6.32 2.45 -69.09 -0.17 6.15 16 17 H 0.07 1.77 6.86 -51.93 -0.36 1.41 16 18 C -0.14 -3.22 8.85 37.16 0.33 -2.89 16 19 C -0.54 -13.45 8.00 -34.45 -0.28 -13.72 16 20 H 0.06 1.54 7.22 -52.48 -0.38 1.16 16 21 C 0.07 1.77 5.24 -17.82 -0.09 1.68 16 22 N -0.88 -24.18 12.01 55.43 0.67 -23.52 16 23 Si 0.89 20.07 29.55 -169.99 -5.02 15.05 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 C -0.04 -0.62 9.24 -39.17 -0.36 -0.98 16 28 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.12 7.61 -52.49 -0.40 0.72 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.15 2.31 8.08 -51.93 -0.42 1.89 16 35 H 0.14 1.68 8.08 -51.92 -0.42 1.26 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 38 H 0.08 1.37 6.96 -51.93 -0.36 1.01 16 39 H 0.08 1.95 6.84 -51.93 -0.36 1.59 16 40 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.04 0.80 7.86 -51.93 -0.41 0.39 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.15 2.41 7.65 -52.48 -0.40 2.01 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -33.29 379.12 -8.97 -42.26 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.00 Total: 2.74 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.76 Total: -15.50 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.32 Total: -43.67 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -2.64 Total: -55.49 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 49.47 SS G_CDS: -0.57 Total: 48.89 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.29 -8.97 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128133621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.854 kcal (2) G-P(sol) polarization free energy of solvation -33.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds