Wall clock time and date at job start Tue Mar 31 2020 23:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47147 * 2 1 4 4 O 1.45195 * 109.47065 * 179.97438 * 3 2 1 5 5 C 1.34717 * 116.99524 * 180.02562 * 4 3 2 6 6 O 1.21462 * 120.00170 * 359.97438 * 5 4 3 7 7 C 1.47729 * 119.99714 * 180.02562 * 5 4 3 8 8 C 1.39622 * 120.15060 * 180.02562 * 7 5 4 9 9 C 1.37945 * 119.84969 * 180.02562 * 8 7 5 10 10 C 1.38365 * 120.15161 * 0.02562 * 9 8 7 11 11 S 1.76197 * 119.85065 * 179.97438 * 10 9 8 12 12 O 1.42100 * 106.39925 * 336.45651 * 11 10 9 13 13 O 1.42103 * 106.39966 * 203.53767 * 11 10 9 14 14 N 1.65597 * 107.21750 * 89.99747 * 11 10 9 15 15 C 1.46506 * 120.00079 * 65.00357 * 14 11 10 16 16 C 1.52996 * 109.47045 * 164.72323 * 15 14 11 17 17 C 1.50706 * 109.46754 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99849 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99719 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00495 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00066 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46898 * 59.99493 * 21 19 17 23 23 H 1.48498 * 109.47407 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47189 * 299.99893 * 21 19 17 25 25 C 1.38370 * 120.29814 * 0.23362 * 10 9 8 26 26 C 1.37943 * 120.15314 * 359.48790 * 25 10 9 27 27 H 1.09005 * 109.47323 * 59.99833 * 1 2 3 28 28 H 1.09003 * 109.47283 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47436 * 299.99747 * 1 2 3 30 30 H 1.09002 * 109.47436 * 240.00253 * 2 1 3 31 31 H 1.08998 * 109.47565 * 119.99942 * 2 1 3 32 32 H 1.09002 * 109.46746 * 59.99831 * 3 2 1 33 33 H 1.08998 * 109.46841 * 300.00386 * 3 2 1 34 34 H 1.08004 * 120.07280 * 359.97438 * 8 7 5 35 35 H 1.08001 * 119.92448 * 179.97438 * 9 8 7 36 36 H 0.97005 * 120.00050 * 244.72378 * 14 11 10 37 37 H 1.08999 * 109.46682 * 284.72550 * 15 14 11 38 38 H 1.09000 * 109.47243 * 44.71866 * 15 14 11 39 39 H 1.08997 * 109.47099 * 299.99462 * 16 15 14 40 40 H 1.08996 * 109.47715 * 60.00141 * 16 15 14 41 41 H 0.96998 * 120.00519 * 180.02562 * 20 19 17 42 42 H 1.07998 * 119.92018 * 179.72619 * 25 10 9 43 43 H 1.07998 * 120.07644 * 180.25923 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4919 1.4426 0.0006 5 6 4.1034 2.6429 0.0012 6 8 3.4419 3.6616 0.0008 7 6 5.5787 2.7203 0.0013 8 6 6.2158 3.9627 0.0025 9 6 7.5937 4.0276 0.0020 10 6 8.3443 2.8653 -0.0002 11 16 10.1039 2.9575 -0.0014 12 8 10.4387 4.2273 -0.5445 13 8 10.5695 1.7312 -0.5479 14 7 10.5946 2.9811 1.5800 15 6 10.3606 1.8162 2.4370 16 6 11.2206 1.9294 3.6974 17 6 10.9794 0.7313 4.5793 18 1 10.2821 -0.0340 4.2717 19 6 11.6480 0.6128 5.7792 20 7 12.4967 1.5450 6.1540 21 14 11.3486 -0.8717 6.8727 22 1 11.7103 -2.1097 6.1365 23 1 12.1833 -0.7620 8.0959 24 1 9.9145 -0.9241 7.2545 25 6 7.7194 1.6308 -0.0068 26 6 6.3422 1.5512 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 5.6311 4.8707 0.0029 35 1 8.0878 4.9880 0.0025 36 1 11.0407 3.7647 1.9378 37 1 9.3081 1.7771 2.7176 38 1 10.6264 0.9079 1.8962 39 1 12.2731 1.9684 3.4168 40 1 10.9548 2.8376 4.2383 41 1 12.9674 1.4615 6.9980 42 1 8.3112 0.7274 -0.0129 43 1 5.8558 0.5870 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273638245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:02 Heat of formation + Delta-G solvation = -151.253608 kcal Electronic energy + Delta-G solvation = -26503.790021 eV Core-core repulsion = 22447.636934 eV Total energy + Delta-G solvation = -4056.153087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96819 -39.13150 -37.14174 -37.05859 -35.74081 -35.46645 -34.33473 -32.78652 -32.01771 -31.42322 -29.19211 -27.42416 -24.89771 -24.54551 -23.14863 -22.03928 -21.46015 -21.20374 -19.46887 -18.52577 -17.93663 -17.40998 -17.06180 -16.99442 -16.35193 -15.86574 -15.23414 -15.20544 -15.02853 -14.61851 -14.54068 -14.10941 -13.92428 -13.85048 -13.51651 -13.39312 -12.97301 -12.94818 -12.61622 -12.58939 -12.00419 -11.95297 -11.83558 -11.68640 -11.65312 -11.53366 -11.34047 -11.21908 -11.10943 -10.90306 -10.82294 -10.66879 -10.50174 -9.79463 -9.62823 -9.38966 -9.32569 -9.00925 -8.44290 -6.11141 -4.15011 -0.07611 0.54392 0.97855 2.00088 2.15292 3.09316 3.28349 3.33037 3.33824 3.37084 3.84533 4.11571 4.23977 4.38257 4.40406 4.41441 4.55224 4.58885 4.75546 4.94652 4.95184 5.01394 5.12617 5.13959 5.24576 5.25680 5.47973 5.57026 5.58977 5.61057 5.68088 5.71900 5.75633 5.85360 6.01010 6.11978 6.38567 6.40102 6.65597 7.30963 7.32012 7.51517 7.60428 7.86646 8.23793 8.90485 9.49821 11.00145 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008779 B = 0.002828 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3188.737524 B = 9897.326139 C =12318.441174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.066 3.934 4 O -0.350 6.350 5 C 0.510 3.490 6 O -0.500 6.500 7 C -0.079 4.079 8 C -0.078 4.078 9 C -0.030 4.030 10 C -0.642 4.642 11 S 2.691 3.309 12 O -0.965 6.965 13 O -0.954 6.954 14 N -1.108 6.108 15 C 0.116 3.884 16 C 0.018 3.982 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.896 3.104 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.030 4.030 26 C -0.083 4.083 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.419 0.581 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.024 0.976 41 H 0.263 0.737 42 H 0.153 0.847 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.178 0.755 -13.648 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.007 4.007 4 O -0.267 6.267 5 C 0.354 3.646 6 O -0.388 6.388 7 C -0.080 4.080 8 C -0.097 4.097 9 C -0.049 4.049 10 C -0.726 4.726 11 S 2.779 3.221 12 O -0.955 6.955 13 O -0.943 6.943 14 N -0.870 5.870 15 C -0.008 4.008 16 C -0.021 4.021 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.724 3.276 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.049 4.049 26 C -0.102 4.102 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.171 0.829 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.895 0.944 -14.316 23.724 hybrid contribution -0.871 -0.370 1.236 1.557 sum -19.766 0.573 -13.079 23.708 Atomic orbital electron populations 1.21691 0.93996 1.02712 1.02363 1.21538 0.96242 0.94446 1.04057 1.23218 0.75617 0.98997 1.02903 1.86534 1.23881 1.32355 1.83920 1.21158 0.88981 0.81588 0.72881 1.90845 1.66705 1.36038 1.45238 1.19403 0.89129 0.95390 1.04113 1.21368 0.94657 0.96965 0.96730 1.20918 0.93409 0.97751 0.92783 1.31559 1.28763 0.99392 1.12904 1.02029 0.73382 0.73622 0.73110 1.93573 1.82636 1.42197 1.77143 1.93595 1.78043 1.45935 1.76767 1.55479 1.73802 1.27023 1.30719 1.21706 1.00425 0.84975 0.93732 1.19282 0.95101 0.97999 0.89697 1.21034 1.25294 1.06357 1.03786 0.92288 1.24998 0.94966 0.96440 0.97841 1.69941 1.26994 1.33628 1.22511 0.86593 0.78221 0.82993 0.79821 1.20067 1.21262 1.20175 1.21051 0.94886 0.96798 0.92174 1.21601 0.93854 0.98296 0.96430 0.92313 0.91494 0.92227 0.90601 0.90467 0.90901 0.90989 0.83594 0.83086 0.74607 0.92882 0.91140 0.95479 0.95746 0.92729 0.82930 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.15 0.37 -0.31 16 2 C -0.13 -0.74 6.31 -26.73 -0.17 -0.90 16 3 C 0.07 0.53 5.48 37.16 0.20 0.73 16 4 O -0.35 -3.56 9.47 -40.54 -0.38 -3.95 16 5 C 0.51 5.99 7.90 34.61 0.27 6.26 16 6 O -0.50 -6.81 16.14 -19.24 -0.31 -7.12 16 7 C -0.08 -0.91 5.87 -104.98 -0.62 -1.52 16 8 C -0.08 -0.87 9.60 -39.17 -0.38 -1.25 16 9 C -0.03 -0.34 9.50 -39.64 -0.38 -0.72 16 10 C -0.64 -8.11 5.95 -39.49 -0.24 -8.34 16 11 S 2.69 38.86 5.74 -107.50 -0.62 38.25 16 12 O -0.97 -15.31 17.27 -57.17 -0.99 -16.30 16 13 O -0.95 -16.19 16.73 -57.17 -0.96 -17.15 16 14 N -1.11 -17.07 6.00 -10.61 -0.06 -17.13 16 15 C 0.12 2.14 6.16 -4.04 -0.02 2.12 16 16 C 0.02 0.43 5.12 -27.88 -0.14 0.28 16 17 C -0.53 -13.90 9.11 -34.44 -0.31 -14.21 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.03 -0.35 9.50 -39.64 -0.38 -0.73 16 26 C -0.08 -0.89 9.62 -39.17 -0.38 -1.27 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.15 1.43 7.65 -52.48 -0.40 1.03 16 35 H 0.15 1.48 7.60 -52.49 -0.40 1.08 16 36 H 0.42 5.96 8.65 -34.47 -0.30 5.66 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.29 7.75 -51.93 -0.40 0.89 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.15 1.63 7.60 -52.49 -0.40 1.23 16 43 H 0.15 1.26 7.61 -52.49 -0.40 0.86 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -33.52 385.29 -10.12 -43.64 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.07 Total: 1.44 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.26 Total: -18.34 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.67 Total: -42.01 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.64 Total: -44.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 38.86 SS G_CDS: -0.62 Total: 38.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.52 -10.12 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273638245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.609 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds