Wall clock time and date at job start Tue Mar 31 2020 23:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46945 * 2 1 4 4 C 1.50697 * 109.47615 * 239.99427 * 2 1 3 5 5 O 1.21290 * 119.99934 * 239.99989 * 4 2 1 6 6 N 1.34778 * 119.99560 * 59.99837 * 4 2 1 7 7 C 1.39995 * 119.99836 * 175.49994 * 6 4 2 8 8 C 1.38922 * 120.00326 * 215.12490 * 7 6 4 9 9 C 1.38005 * 119.99568 * 180.02562 * 8 7 6 10 10 C 1.38909 * 120.00085 * 0.02562 * 9 8 7 11 11 O 1.35780 * 119.99168 * 179.97438 * 10 9 8 12 12 C 1.34810 * 117.00255 * 5.33843 * 11 10 9 13 13 H 1.07994 * 120.00313 * 354.96932 * 12 11 10 14 14 C 1.38634 * 119.99954 * 174.96456 * 12 11 10 15 15 N 1.31572 * 119.99982 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00078 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46807 * 89.99736 * 16 14 12 18 18 H 1.48492 * 109.47255 * 210.00095 * 16 14 12 19 19 H 1.48504 * 109.47017 * 330.00319 * 16 14 12 20 20 C 1.38903 * 120.00421 * 0.25082 * 10 9 8 21 21 C 1.38005 * 120.00278 * 359.45406 * 20 10 9 22 22 C 1.53006 * 109.46977 * 119.99160 * 2 1 3 23 23 H 1.08996 * 109.46583 * 60.00548 * 22 2 1 24 24 C 1.53003 * 109.46932 * 180.02562 * 22 2 1 25 25 S 1.81400 * 109.47193 * 300.00335 * 22 2 1 26 26 C 1.81398 * 101.91936 * 184.99823 * 25 22 2 27 27 O 1.42093 * 108.57829 * 299.48740 * 25 22 2 28 28 O 1.42099 * 108.57755 * 70.50973 * 25 22 2 29 29 H 1.09007 * 109.46863 * 60.00579 * 1 2 3 30 30 H 1.09004 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47937 * 300.00782 * 1 2 3 32 32 H 0.97001 * 120.00455 * 355.50612 * 6 4 2 33 33 H 1.07996 * 119.99801 * 359.97438 * 8 7 6 34 34 H 1.07990 * 119.99603 * 179.97438 * 9 8 7 35 35 H 0.97009 * 119.99724 * 180.02562 * 15 14 12 36 36 H 1.08003 * 119.99373 * 179.70770 * 20 10 9 37 37 H 1.07994 * 120.00127 * 180.27491 * 21 20 10 38 38 H 1.09007 * 109.46818 * 180.02562 * 24 22 2 39 39 H 1.08995 * 109.47113 * 300.00180 * 24 22 2 40 40 H 1.08996 * 109.47209 * 60.00723 * 24 22 2 41 41 H 1.08997 * 109.47044 * 60.00185 * 26 25 22 42 42 H 1.09004 * 109.47254 * 180.02562 * 26 25 22 43 43 H 1.09001 * 109.47321 * 299.99822 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7297 -1.6966 -1.1189 6 7 1.7068 -0.2501 -2.4545 7 6 2.2492 -0.8524 -3.5959 8 6 2.5587 -0.0800 -4.7084 9 6 3.0929 -0.6740 -5.8337 10 6 3.3207 -2.0442 -5.8542 11 8 3.8458 -2.6284 -6.9616 12 6 4.2261 -1.8103 -7.9634 13 1 4.0330 -0.7499 -7.8974 14 6 4.8652 -2.3304 -9.0783 15 7 5.2368 -1.5319 -10.0557 16 14 5.2001 -4.1646 -9.1922 17 1 4.0491 -4.8383 -9.8454 18 1 6.4286 -4.3947 -9.9940 19 1 5.3886 -4.7191 -7.8275 20 6 3.0059 -2.8173 -4.7440 21 6 2.4773 -2.2226 -3.6163 22 6 2.0399 -0.7211 1.2494 23 1 1.6766 -1.7487 1.2494 24 6 3.5700 -0.7205 1.2497 25 16 1.4352 0.1342 2.7304 26 6 2.2700 -0.7785 4.0573 27 8 1.9290 1.4665 2.7171 28 8 0.0357 -0.0859 2.8405 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.0967 0.4986 -2.5447 33 1 2.3805 0.9850 -4.6928 34 1 3.3331 -0.0737 -6.6986 35 1 5.6837 -1.8959 -10.8360 36 1 3.1786 -3.8833 -4.7618 37 1 2.2367 -2.8231 -2.7516 38 1 3.9333 -1.2347 2.1396 39 1 3.9336 -1.2342 0.3598 40 1 3.9329 0.3072 1.2499 41 1 3.3495 -0.6998 3.9288 42 1 1.9869 -0.3572 5.0219 43 1 1.9749 -1.8271 4.0185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001440347821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:54 Heat of formation + Delta-G solvation = -98.020557 kcal Electronic energy + Delta-G solvation = -27233.008719 eV Core-core repulsion = 23179.163990 eV Total energy + Delta-G solvation = -4053.844729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63057 -39.03831 -37.41892 -37.06647 -36.47800 -35.47334 -34.25840 -32.38401 -31.49153 -30.36270 -29.49117 -28.16520 -25.43876 -24.75474 -23.75153 -22.42179 -21.30851 -20.05888 -19.17716 -18.25823 -17.85529 -17.55623 -16.99310 -16.54436 -16.33871 -15.99934 -15.46950 -14.83475 -14.78184 -14.33252 -14.21065 -13.87343 -13.84293 -13.75649 -13.64954 -13.54598 -13.09513 -12.85546 -12.72396 -12.42125 -12.36571 -12.33513 -12.27427 -12.03737 -11.84387 -11.80562 -11.69713 -11.49176 -11.35680 -11.02121 -10.82647 -10.73361 -10.23426 -9.81761 -9.59236 -9.29619 -8.81185 -8.35238 -7.12806 -6.45306 -4.11355 -0.45765 1.90093 2.05634 2.26717 2.64420 2.98154 3.21100 3.23624 3.28642 3.38739 3.56846 3.84368 4.12596 4.21031 4.32668 4.37771 4.46452 4.51056 4.69745 4.83047 4.88107 4.93208 5.07626 5.09872 5.21783 5.32060 5.34546 5.43919 5.54030 5.65635 5.76329 5.92856 6.03324 6.09120 6.17046 6.61254 6.69272 6.85600 7.01056 7.17523 7.51955 7.54151 7.74076 7.97926 8.18464 8.89784 9.51659 10.62083 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.032353 B = 0.002085 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.238020 B =13423.886281 C =13704.836989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 H 0.116 0.884 4 C 0.521 3.479 5 O -0.519 6.519 6 N -0.657 5.657 7 C 0.040 3.960 8 C -0.090 4.090 9 C -0.207 4.207 10 C 0.153 3.847 11 O -0.215 6.215 12 C -0.390 4.390 13 H 0.107 0.893 14 C 0.063 3.937 15 N -0.878 5.878 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.259 1.259 20 C -0.179 4.179 21 C -0.069 4.069 22 C -0.548 4.548 23 H 0.145 0.855 24 C -0.161 4.161 25 S 2.416 3.584 26 C -0.657 4.657 27 O -0.937 6.937 28 O -0.938 6.938 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.404 0.596 33 H 0.114 0.886 34 H 0.138 0.862 35 H 0.280 0.720 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.777 3.081 25.562 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.117 4.117 3 H 0.134 0.866 4 C 0.307 3.693 5 O -0.395 6.395 6 N -0.301 5.301 7 C -0.052 4.052 8 C -0.110 4.110 9 C -0.226 4.226 10 C 0.101 3.899 11 O -0.120 6.120 12 C -0.465 4.465 13 H 0.124 0.876 14 C -0.140 4.140 15 N -0.516 5.516 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.183 1.183 20 C -0.199 4.199 21 C -0.089 4.089 22 C -0.657 4.657 23 H 0.163 0.837 24 C -0.218 4.218 25 S 2.599 3.401 26 C -0.806 4.806 27 O -0.934 6.934 28 O -0.935 6.935 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.239 0.761 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.089 0.911 41 H 0.151 0.849 42 H 0.148 0.852 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.701 2.889 25.465 26.760 hybrid contribution 0.454 -0.853 -0.357 1.030 sum -7.247 2.037 25.108 26.212 Atomic orbital electron populations 1.22280 0.91593 1.04821 1.04802 1.21088 0.97996 1.00998 0.91641 0.86645 1.20161 0.80271 0.84904 0.83978 1.90621 1.37393 1.25459 1.85995 1.43207 1.46941 1.35596 1.04386 1.17311 1.08352 0.92089 0.87481 1.20554 0.99362 0.98246 0.92824 1.21100 1.06776 0.95058 0.99701 1.19165 0.92616 0.91284 0.86845 1.83581 1.69626 1.36348 1.22461 1.20758 1.38254 0.92386 0.95130 0.87594 1.24475 0.95176 1.00123 0.94249 1.69654 1.38478 1.35706 1.07769 0.86173 0.77992 0.83474 0.79240 1.19856 1.20797 1.18298 1.20144 1.08089 0.99671 0.92013 1.20725 0.98290 0.92666 0.97222 1.29980 1.07772 1.13652 1.14342 0.83692 1.22016 0.89356 1.04074 1.06374 1.08130 0.76294 0.77059 0.78639 1.30269 1.15368 1.15792 1.19187 1.93594 1.81908 1.32022 1.85850 1.93596 1.27826 1.86538 1.85506 0.90488 0.90519 0.89727 0.76094 0.86815 0.84449 0.91010 0.86155 0.85138 0.91452 0.87084 0.91054 0.84905 0.85207 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 8.56 37.15 0.32 -1.03 16 2 C -0.09 -0.81 2.32 -91.77 -0.21 -1.02 16 3 H 0.12 0.84 8.14 -51.92 -0.42 0.41 16 4 C 0.52 6.24 6.70 -10.99 -0.07 6.16 16 5 O -0.52 -7.69 11.10 5.55 0.06 -7.63 16 6 N -0.66 -7.97 5.26 -9.82 -0.05 -8.02 16 7 C 0.04 0.65 6.30 -83.62 -0.53 0.12 16 8 C -0.09 -1.52 9.96 -39.41 -0.39 -1.91 16 9 C -0.21 -4.27 9.16 -39.42 -0.36 -4.63 16 10 C 0.15 3.47 6.65 -39.09 -0.26 3.22 16 11 O -0.22 -5.60 8.58 0.01 0.00 -5.59 16 12 C -0.39 -10.78 9.94 30.88 0.31 -10.48 16 13 H 0.11 2.97 5.43 -52.49 -0.28 2.68 16 14 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 15 N -0.88 -25.04 13.96 55.48 0.77 -24.26 16 16 Si 0.91 21.47 28.62 -169.99 -4.86 16.60 16 17 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.18 -3.58 9.98 -39.42 -0.39 -3.98 16 21 C -0.07 -1.23 8.69 -39.41 -0.34 -1.58 16 22 C -0.55 -3.98 2.03 -26.73 -0.05 -4.04 16 23 H 0.15 0.89 8.10 -51.93 -0.42 0.47 16 24 C -0.16 -1.20 8.58 37.16 0.32 -0.88 16 25 S 2.42 16.67 4.41 -107.50 -0.47 16.20 16 26 C -0.66 -2.38 10.01 101.05 1.01 -1.37 16 27 O -0.94 -9.47 18.06 -57.83 -1.04 -10.51 16 28 O -0.94 -8.99 15.71 -57.83 -0.91 -9.90 16 29 H 0.08 0.46 7.47 -51.93 -0.39 0.07 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.66 5.52 -51.93 -0.29 0.37 16 32 H 0.40 3.54 8.12 -40.82 -0.33 3.21 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.14 2.96 5.63 -52.49 -0.30 2.67 16 35 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 37 H 0.13 2.23 6.23 -52.49 -0.33 1.90 16 38 H 0.07 0.31 6.39 -51.93 -0.33 -0.03 16 39 H 0.11 1.17 5.51 -51.93 -0.29 0.88 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.13 0.30 6.77 -51.93 -0.35 -0.05 16 42 H 0.13 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -35.36 361.70 -7.21 -42.57 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.40 Total: 4.86 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -0.76 Total: -19.77 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.72 Total: -32.28 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.89 Total: -33.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.86 Total: 16.60 kcal Atomic # 16 Polarization: 16.67 SS G_CDS: -0.47 Total: 16.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.36 -7.21 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440347821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.453 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds