Wall clock time and date at job start Tue Mar 31 2020 23:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.52995 * 109.46824 * 85.00335 * 4 3 2 6 6 C 1.50706 * 109.47335 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99587 * 359.97438 * 6 5 4 8 8 O 1.34227 * 120.00347 * 180.02562 * 6 5 4 9 9 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 10 10 O 1.42095 * 106.40469 * 23.26116 * 9 3 2 11 11 O 1.42098 * 106.40441 * 156.18457 * 9 3 2 12 12 C 1.76207 * 107.21624 * 269.72430 * 9 3 2 13 13 C 1.38238 * 119.99673 * 269.72920 * 12 9 3 14 14 C 1.38231 * 119.99694 * 179.76874 * 13 12 9 15 15 C 1.38237 * 120.00023 * 0.50296 * 14 13 12 16 16 C 1.50703 * 120.00079 * 179.72591 * 15 14 13 17 17 C 1.50697 * 109.47112 * 270.01993 * 16 15 14 18 18 H 1.07999 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99924 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00207 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.46926 * 89.99709 * 21 19 17 23 23 H 1.48494 * 109.47200 * 210.00053 * 21 19 17 24 24 H 1.48504 * 109.46978 * 330.00162 * 21 19 17 25 25 C 1.38232 * 120.00056 * 359.74738 * 15 14 13 26 26 C 1.38224 * 119.99967 * 90.00006 * 12 9 3 27 27 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 28 28 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 29 29 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 31 31 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 32 32 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 33 33 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 34 34 H 1.09003 * 109.47335 * 299.99547 * 5 4 3 35 35 H 1.09002 * 109.47311 * 59.99668 * 5 4 3 36 36 H 0.96694 * 116.99863 * 179.97438 * 8 6 5 37 37 H 1.07998 * 120.00071 * 359.97438 * 13 12 9 38 38 H 1.08002 * 120.00049 * 180.22469 * 14 13 12 39 39 H 1.09002 * 109.46915 * 30.02122 * 16 15 14 40 40 H 1.09004 * 109.46770 * 150.02118 * 16 15 14 41 41 H 0.96998 * 120.00074 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00465 * 179.97438 * 25 15 14 43 43 H 1.08006 * 120.00306 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.5151 1.7839 1.8918 6 6 3.6589 2.5317 3.1923 7 8 2.7676 3.2510 3.5772 8 8 4.7774 2.3995 3.9225 9 16 2.4057 2.1224 -1.4293 10 8 1.6809 1.4412 -2.4440 11 8 2.2940 3.5203 -1.1995 12 6 4.1112 1.8034 -1.7368 13 6 5.0735 2.6771 -1.2661 14 6 6.4117 2.4244 -1.5032 15 6 6.7870 1.3035 -2.2199 16 6 8.2455 1.0312 -2.4837 17 6 8.6526 1.6861 -3.7785 18 1 7.9278 2.2440 -4.3526 19 6 9.9507 1.5738 -4.2295 20 7 10.3061 2.1457 -5.3592 21 14 11.2046 0.6093 -3.2360 22 1 11.1937 -0.8107 -3.6702 23 1 12.5566 1.1834 -3.4543 24 1 10.8601 0.6885 -1.7936 25 6 5.8244 0.4325 -2.6950 26 6 4.4864 0.6826 -2.4534 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0923 3.1802 1.0756 33 1 1.3617 1.8097 1.9453 34 1 3.5812 0.7123 2.0801 35 1 4.3117 2.0828 1.2103 36 1 4.8237 2.8993 4.7490 37 1 4.7801 3.5554 -0.7103 38 1 7.1638 3.1050 -1.1324 39 1 8.8441 1.4361 -1.6677 40 1 8.4074 -0.0445 -2.5540 41 1 11.2193 2.0664 -5.6766 42 1 6.1175 -0.4430 -3.2553 43 1 3.7343 0.0021 -2.8245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596318921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:53 Heat of formation + Delta-G solvation = -173.830007 kcal Electronic energy + Delta-G solvation = -27836.234651 eV Core-core repulsion = 23779.102578 eV Total energy + Delta-G solvation = -4057.132074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24154 -40.25986 -38.46989 -38.18457 -37.04914 -36.98474 -35.53929 -33.56617 -33.20170 -31.96636 -30.33720 -29.70441 -25.86632 -25.25301 -23.80086 -23.60065 -22.32060 -21.92214 -19.99086 -19.30256 -19.02287 -18.78327 -18.54534 -17.76120 -17.07906 -16.97820 -16.74784 -16.22513 -15.99250 -15.54286 -15.35606 -14.98044 -14.87696 -14.59404 -14.50444 -14.32730 -14.19953 -13.98066 -13.61867 -13.44300 -13.31508 -13.21581 -13.19400 -13.08226 -12.69673 -12.56827 -12.53704 -12.50103 -12.07664 -12.03170 -11.91484 -11.75228 -11.69889 -11.65653 -11.50265 -10.82106 -10.25043 -9.96131 -9.90636 -8.33063 -6.40451 -0.72580 -0.08952 0.39026 1.22159 1.37031 1.38969 1.50235 1.75732 2.28525 2.33284 2.54907 2.74544 3.01618 3.20471 3.68890 3.74639 3.84763 3.96576 4.08554 4.09587 4.35950 4.37434 4.43700 4.46778 4.47576 4.58980 4.66803 4.78557 4.82989 4.85437 4.97532 4.99035 5.01285 5.09778 5.17996 5.26700 5.29351 5.44621 5.50241 5.58166 5.65949 5.78622 5.93611 6.19478 6.66553 7.01394 7.23657 8.83445 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012484 B = 0.003320 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.318654 B = 8430.631267 C = 9748.354583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 N -0.984 5.984 4 C 0.125 3.875 5 C -0.144 4.144 6 C 0.492 3.508 7 O -0.548 6.548 8 O -0.515 6.515 9 S 2.707 3.293 10 O -0.975 6.975 11 O -0.984 6.984 12 C -0.697 4.697 13 C -0.025 4.025 14 C -0.150 4.150 15 C -0.001 4.001 16 C 0.011 3.989 17 C -0.527 4.527 18 H 0.026 0.974 19 C 0.009 3.991 20 N -0.948 5.948 21 Si 0.954 3.046 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.240 1.240 25 C -0.150 4.150 26 C -0.018 4.018 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.428 0.572 37 H 0.150 0.850 38 H 0.133 0.867 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.269 0.731 42 H 0.136 0.864 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.571 -7.148 20.195 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.016 4.016 3 N -0.823 5.823 4 C 0.000 4.000 5 C -0.183 4.183 6 C 0.335 3.665 7 O -0.439 6.439 8 O -0.329 6.329 9 S 2.799 3.201 10 O -0.965 6.965 11 O -0.975 6.975 12 C -0.785 4.785 13 C -0.044 4.044 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.026 4.026 17 C -0.564 4.564 18 H 0.044 0.956 19 C -0.189 4.189 20 N -0.588 5.588 21 Si 0.776 3.224 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.163 1.163 25 C -0.169 4.169 26 C -0.037 4.037 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.160 0.840 35 H 0.126 0.874 36 H 0.290 0.710 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.269 -6.678 19.303 26.747 hybrid contribution 1.740 0.245 0.162 1.764 sum -15.530 -6.433 19.464 25.718 Atomic orbital electron populations 1.22258 0.95539 1.03626 1.02151 1.21648 0.95020 0.79563 1.05401 1.57403 1.79157 1.25130 1.20595 1.21228 0.96611 0.97402 0.84772 1.21962 1.00834 1.04075 0.91419 1.23378 0.78628 0.78594 0.85891 1.90743 1.42285 1.38909 1.71938 1.84519 1.40850 1.68610 1.38876 1.01393 0.73311 0.72605 0.72796 1.93537 1.70562 1.75539 1.56875 1.93526 1.86726 1.31690 1.85520 1.30803 1.24728 1.06628 1.16319 1.20962 0.92065 0.96538 0.94840 1.21323 0.96672 0.97803 1.01110 1.20583 0.96803 0.92866 0.89869 1.18831 0.89922 0.97777 0.96035 1.21080 0.95921 1.33475 1.05967 0.95594 1.26020 1.00671 0.96289 0.95910 1.70061 1.19694 1.46045 1.23021 0.85612 0.77329 0.78921 0.80540 1.18817 1.21139 1.16322 1.21366 0.92831 1.01256 1.01473 1.21028 0.96563 0.94149 0.91978 0.91461 0.93908 0.89446 0.89408 0.86769 0.89391 0.86743 0.84039 0.87434 0.70992 0.83276 0.84912 0.94063 0.94065 0.92246 0.84642 0.82565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 10.24 71.98 0.74 -1.33 16 2 C 0.11 1.22 6.06 86.38 0.52 1.74 16 3 N -0.98 -16.10 2.78 -515.80 -1.44 -17.53 16 4 C 0.13 1.86 4.97 86.38 0.43 2.29 16 5 C -0.14 -1.82 6.13 29.85 0.18 -1.64 16 6 C 0.49 7.62 8.33 71.24 0.59 8.22 16 7 O -0.55 -11.80 16.74 21.96 0.37 -11.43 16 8 O -0.51 -6.18 13.42 -51.38 -0.69 -6.87 16 9 S 2.71 68.13 5.65 -56.49 -0.32 67.81 16 10 O -0.97 -28.41 16.25 -128.00 -2.08 -30.49 16 11 O -0.98 -30.12 15.83 -128.00 -2.03 -32.15 16 12 C -0.70 -19.30 5.97 22.27 0.13 -19.17 16 13 C -0.02 -0.72 8.47 22.27 0.19 -0.54 16 14 C -0.15 -5.11 9.70 22.27 0.22 -4.90 16 15 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 16 C 0.01 0.50 4.17 29.10 0.12 0.62 16 17 C -0.53 -29.35 9.65 25.60 0.25 -29.11 16 18 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 19 C 0.01 0.48 5.47 84.66 0.46 0.95 16 20 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 21 Si 0.95 41.67 27.47 68.60 1.88 43.56 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 25 C -0.15 -5.04 9.70 22.27 0.22 -4.82 16 26 C -0.02 -0.51 9.52 22.27 0.21 -0.30 16 27 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.00 7.61 -2.39 -0.02 0.99 16 31 H 0.11 0.57 8.11 -2.39 -0.02 0.55 16 32 H 0.09 1.66 6.87 -2.39 -0.02 1.64 16 33 H 0.11 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.51 7.06 -2.39 -0.02 1.50 16 36 H 0.43 1.75 9.10 -74.06 -0.67 1.07 16 37 H 0.15 3.69 7.61 -2.91 -0.02 3.66 16 38 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 39 H 0.04 1.73 7.14 -2.39 -0.02 1.71 16 40 H 0.04 1.69 7.51 -2.39 -0.02 1.67 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.57 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 43 H 0.16 3.56 7.62 -2.91 -0.02 3.54 16 Total: -1.00 -79.19 378.00 0.47 -78.72 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.30 Total: 14.52 kcal Atomic # 6 Polarization: -52.28 SS G_CDS: 4.16 Total: -48.11 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.14 Total: -75.55 kcal Atomic # 8 Polarization: -76.52 SS G_CDS: -4.43 Total: -80.95 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.88 Total: 43.56 kcal Atomic # 16 Polarization: 68.13 SS G_CDS: -0.32 Total: 67.81 kcal Total: -79.19 0.47 -78.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596318921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.111 kcal (2) G-P(sol) polarization free energy of solvation -79.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds