Wall clock time and date at job start Tue Mar 31 2020 23:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 120.00420 * 2 1 4 4 H 1.48500 * 109.46998 * 269.99461 * 3 2 1 5 5 H 1.48500 * 109.47160 * 29.99225 * 3 2 1 6 6 H 1.48494 * 109.47254 * 149.99350 * 3 2 1 7 7 C 1.38802 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.07987 * 120.00196 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99570 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99850 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47197 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99681 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99955 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99820 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46871 * 179.97438 * 14 13 11 16 16 N 1.46901 * 109.46916 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47066 * 180.02562 * 17 16 15 19 19 N 1.30796 * 127.01914 * 90.02532 * 18 17 16 20 20 O 1.21590 * 111.71447 * 179.97438 * 19 18 17 21 21 C 1.32789 * 111.22274 * 359.93574 * 20 19 18 22 22 C 1.35842 * 106.51969 * 359.89230 * 21 20 19 23 23 C 1.50067 * 123.78541 * 179.43465 * 22 21 20 24 24 O 1.43612 * 107.87214 * 345.78389 * 23 22 21 25 25 C 1.42997 * 114.40386 * 49.86758 * 24 23 22 26 26 C 1.50623 * 130.95902 * 180.22314 * 21 20 19 27 27 H 0.97005 * 119.99662 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.46946 * 59.99703 * 10 9 7 29 29 H 1.09006 * 109.46691 * 299.99695 * 10 9 7 30 30 H 0.97000 * 120.00338 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47316 * 60.00405 * 14 13 11 32 32 H 1.08996 * 109.47008 * 299.99302 * 14 13 11 33 33 H 1.09004 * 109.46889 * 60.00248 * 15 14 13 34 34 H 1.08995 * 109.47384 * 299.99888 * 15 14 13 35 35 H 1.00901 * 111.00067 * 303.95263 * 16 15 14 36 36 H 1.09001 * 109.46798 * 300.00327 * 17 16 15 37 37 H 1.08998 * 109.46961 * 60.00043 * 17 16 15 38 38 H 1.09003 * 109.93469 * 226.09375 * 23 22 21 39 39 H 1.08994 * 109.64578 * 105.30841 * 23 22 21 40 40 H 1.08999 * 109.40426 * 169.40652 * 25 24 23 41 41 H 1.09000 * 109.32800 * 49.61729 * 25 24 23 42 42 H 1.08999 * 109.83158 * 283.63899 * 26 21 20 43 43 H 1.08999 * 109.82731 * 44.57524 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0462 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3299 -7.7151 0.0003 15 6 3.5019 -8.6987 0.0001 16 7 2.9867 -10.0744 0.0007 17 6 4.0864 -11.0484 0.0012 18 6 3.5204 -12.4450 0.0012 19 7 3.2254 -13.1752 -1.0432 20 8 2.7851 -14.2622 -0.7223 21 6 2.7344 -14.3894 0.5985 22 6 3.2084 -13.2267 1.1170 23 6 3.3094 -12.9491 2.5883 24 8 2.5320 -13.9401 3.2782 25 6 2.8071 -15.2868 2.8836 26 6 2.2758 -15.5342 1.4633 27 1 -0.4850 0.8401 -0.0004 28 1 3.1242 -3.7315 0.8904 29 1 3.1242 -3.7315 -0.8895 30 1 3.8006 -6.1837 0.0006 31 1 1.7217 -7.8753 -0.8899 32 1 1.7211 -7.8751 0.8901 33 1 4.1106 -8.5387 0.8902 34 1 4.1105 -8.5386 -0.8898 35 1 2.3674 -10.2283 0.7823 36 1 4.6991 -10.9050 -0.8888 37 1 4.6990 -10.9043 0.8912 38 1 2.9181 -11.9554 2.8067 39 1 4.3511 -13.0127 2.9026 40 1 2.3213 -15.9736 3.5767 41 1 3.8838 -15.4552 2.9019 42 1 1.1866 -15.5735 1.4777 43 1 2.6752 -16.4721 1.0774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799554.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:37 Heat of formation + Delta-G solvation = -15.665189 kcal Electronic energy + Delta-G solvation = -25513.852356 eV Core-core repulsion = 21495.871574 eV Total energy + Delta-G solvation = -4017.980781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.47605 -39.47688 -39.21654 -37.41429 -35.11533 -33.79586 -33.57134 -32.42536 -31.19865 -30.30768 -28.42931 -26.97452 -25.65450 -25.31024 -24.59316 -22.44567 -21.93842 -20.52795 -20.37381 -18.20201 -18.05310 -17.83895 -16.91753 -16.67470 -16.29663 -16.16644 -16.02345 -15.45107 -15.23683 -14.86239 -14.79871 -14.55509 -14.32136 -14.11142 -13.84001 -13.69446 -13.43599 -13.10032 -12.88353 -12.55302 -12.27473 -12.23107 -11.86510 -11.78489 -11.62552 -11.46119 -11.06115 -11.02227 -10.77972 -10.74847 -10.41538 -9.81589 -9.61987 -9.43109 -9.06896 -9.00974 -8.90896 -8.23252 -6.49745 -6.21321 -3.91998 0.91002 1.58332 2.41613 2.95726 3.04016 3.09670 3.22617 3.26206 3.30465 3.49995 3.67430 3.84959 4.04984 4.08256 4.20643 4.25774 4.33127 4.44079 4.59705 4.69819 4.71134 4.78468 4.85284 4.88284 5.01808 5.10006 5.13810 5.16536 5.17974 5.19132 5.25560 5.46647 5.60314 5.72705 5.86017 5.89869 6.13368 6.34750 6.35062 6.58059 6.79395 7.59738 7.67930 7.75761 8.35437 8.60458 9.23893 10.86103 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031338 B = 0.001442 C = 0.001424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.268168 B =19411.563745 C =19652.685817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.051 3.949 16 N -0.679 5.679 17 C 0.139 3.861 18 C 0.044 3.956 19 N -0.348 5.348 20 O 0.115 5.885 21 C -0.024 4.024 22 C -0.250 4.250 23 C 0.141 3.859 24 O -0.372 6.372 25 C 0.063 3.937 26 C -0.072 4.072 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.347 0.653 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 -33.714 5.724 36.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.078 4.078 16 N -0.312 5.312 17 C 0.010 3.990 18 C -0.114 4.114 19 N -0.052 5.052 20 O 0.050 5.950 21 C -0.090 4.090 22 C -0.254 4.254 23 C 0.064 3.936 24 O -0.290 6.290 25 C -0.014 4.014 26 C -0.110 4.110 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.166 0.834 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.760 -33.714 3.851 35.309 hybrid contribution 2.951 1.399 1.282 3.508 sum 12.711 -32.316 5.133 35.103 Atomic orbital electron populations 1.70022 1.05955 1.27457 1.46815 1.24995 0.95028 0.99029 0.94529 0.86161 0.79385 0.81559 0.78348 1.20267 1.20746 1.19720 1.22870 0.94914 0.91667 1.59002 0.90918 1.85423 1.04901 0.96311 1.96718 1.23527 1.06594 0.95303 1.04940 1.20304 0.86500 0.86225 0.75156 1.90716 1.15357 1.85566 1.47286 1.45881 1.09959 1.05357 1.78242 1.21113 0.95565 0.80352 1.03160 1.22118 0.96839 0.87222 1.01654 1.60228 1.18243 1.01846 1.50915 1.20150 0.92310 0.83835 1.02747 1.22680 1.02326 0.98382 0.88024 1.74416 1.14710 0.92869 1.23218 1.84731 1.60140 1.28428 1.21712 1.24005 1.01697 0.99000 0.84255 1.21402 1.09566 0.95545 0.98923 1.20879 0.96272 0.93033 0.83457 1.88137 1.63867 1.14909 1.62131 1.22745 1.00653 0.84362 0.93680 1.21036 1.03315 0.94127 0.92544 0.92174 0.89208 0.89175 0.76880 0.90579 0.91687 0.94090 0.89892 0.83418 0.88728 0.92460 0.87211 0.90976 0.86821 0.92113 0.87682 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.96 7.85 -10.99 -0.09 9.88 16 12 O -0.52 -11.90 15.86 5.55 0.09 -11.82 16 13 N -0.74 -9.62 5.56 -60.29 -0.33 -9.96 16 14 C 0.12 1.42 5.93 -4.04 -0.02 1.39 16 15 C 0.05 0.40 5.80 -3.82 -0.02 0.38 16 16 N -0.68 -5.68 6.49 -115.05 -0.75 -6.42 16 17 C 0.14 1.01 6.27 -4.97 -0.03 0.98 16 18 C 0.04 0.40 6.83 -82.46 -0.56 -0.16 16 19 N -0.35 -3.86 12.11 33.44 0.40 -3.46 16 20 O 0.11 1.11 11.19 20.10 0.22 1.33 16 21 C -0.02 -0.18 7.51 -35.20 -0.26 -0.44 16 22 C -0.25 -1.89 6.17 -105.21 -0.65 -2.54 16 23 C 0.14 0.79 7.26 35.70 0.26 1.05 16 24 O -0.37 -2.41 10.76 -35.23 -0.38 -2.79 16 25 C 0.06 0.21 6.77 37.50 0.25 0.46 16 26 C -0.07 -0.26 6.56 -27.58 -0.18 -0.44 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 30 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.35 2.71 8.72 -39.29 -0.34 2.37 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.06 0.15 8.09 -51.93 -0.42 -0.27 16 42 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -37.50 381.99 -8.53 -46.02 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.15 Total: -0.39 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -0.89 Total: -5.31 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.06 Total: -45.36 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.07 Total: -13.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.50 -8.53 -46.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799554.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.359 kcal (2) G-P(sol) polarization free energy of solvation -37.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds