Wall clock time and date at job start Tue Mar 31 2020 23:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 126.70264 * 2 1 4 4 C 1.36824 * 103.84288 * 180.09639 * 3 2 1 5 5 C 1.47519 * 126.94172 * 179.97438 * 4 3 2 6 6 O 1.21581 * 119.99761 * 359.71064 * 5 4 3 7 7 N 1.34773 * 119.99893 * 179.70823 * 5 4 3 8 8 C 1.46501 * 119.99786 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47084 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46884 * 295.00891 * 9 8 7 11 11 C 1.52997 * 109.47127 * 175.00139 * 9 8 7 12 12 N 1.46497 * 109.46631 * 55.00356 * 9 8 7 13 13 C 1.46505 * 120.00341 * 60.00014 * 12 9 8 14 14 C 1.34779 * 119.99848 * 239.99844 * 12 9 8 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 9 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 9 17 17 S 1.80995 * 109.47490 * 180.02562 * 16 14 12 18 18 C 1.76192 * 100.00289 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00046 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00483 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00616 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99437 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47116 * 90.00386 * 22 20 18 24 24 H 1.48505 * 109.46779 * 209.99833 * 22 20 18 25 25 H 1.48496 * 109.47216 * 329.99696 * 22 20 18 26 26 O 1.34640 * 106.11400 * 359.66714 * 4 3 2 27 27 N 1.20886 * 111.46752 * 0.22956 * 26 4 3 28 28 H 1.09000 * 109.47553 * 270.26004 * 1 2 3 29 29 H 1.09000 * 109.47329 * 30.26477 * 1 2 3 30 30 H 1.08998 * 109.47117 * 150.26021 * 1 2 3 31 31 H 1.07993 * 128.07950 * 359.97438 * 3 2 1 32 32 H 0.96999 * 120.00431 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.46848 * 60.00720 * 8 7 5 34 34 H 1.09001 * 109.47209 * 300.00353 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 37 37 H 1.09004 * 109.47261 * 300.00303 * 11 9 8 38 38 H 1.09005 * 109.46851 * 89.99998 * 13 12 9 39 39 H 1.08997 * 109.47129 * 209.99273 * 13 12 9 40 40 H 1.08993 * 109.46804 * 329.99912 * 13 12 9 41 41 H 1.09009 * 109.47061 * 300.00107 * 16 14 12 42 42 H 1.08996 * 109.47578 * 59.99511 * 16 14 12 43 43 H 0.97002 * 119.99999 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6120 0.6011 -0.0022 5 6 4.8870 1.3431 -0.0037 6 8 4.8828 2.5589 -0.0083 7 7 6.0565 0.6732 0.0000 8 6 7.3227 1.4102 -0.0020 9 6 8.4891 0.4199 0.0024 10 1 8.4843 -0.1428 0.9359 11 6 9.8080 1.1849 -0.1254 12 7 8.3493 -0.5042 -1.1256 13 6 8.3279 0.0114 -2.4968 14 6 8.2403 -1.8289 -0.9020 15 8 8.2575 -2.2557 0.2331 16 6 8.0970 -2.7797 -2.0624 17 16 7.9733 -4.4753 -1.4415 18 6 7.8186 -5.3482 -2.9641 19 1 7.8220 -4.8078 -3.8992 20 6 7.6933 -6.7306 -2.9621 21 7 7.5772 -7.3827 -4.0995 22 14 7.6880 -7.6654 -1.3447 23 1 6.2939 -7.7868 -0.8477 24 1 8.2586 -9.0203 -1.5543 25 1 8.5074 -6.9322 -0.3466 26 8 3.4539 -0.7360 0.0041 27 7 2.2847 -1.0432 0.0052 28 1 -0.3634 0.0047 1.0276 29 1 -0.3634 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 2.0678 2.1746 -0.0004 32 1 6.0599 -0.2967 0.0034 33 1 7.3775 2.0406 0.8854 34 1 7.3790 2.0333 -0.8946 35 1 10.6389 0.4794 -0.1227 36 1 9.9119 1.8725 0.7139 37 1 9.8126 1.7476 -1.0589 38 1 9.3449 0.0465 -2.8876 39 1 7.7210 -0.6436 -3.1218 40 1 7.9021 1.0147 -2.5010 41 1 7.1969 -2.5327 -2.6255 42 1 8.9674 -2.6931 -2.7128 43 1 7.4900 -8.3488 -4.0980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508740708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:24 Heat of formation + Delta-G solvation = -7.116368 kcal Electronic energy + Delta-G solvation = -27323.527635 eV Core-core repulsion = 23305.917558 eV Total energy + Delta-G solvation = -4017.610077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.23911 -40.40793 -39.48853 -36.74470 -35.22988 -34.46772 -32.64087 -32.44872 -31.91492 -29.01231 -28.93104 -27.11760 -26.98939 -25.62928 -23.87672 -23.06691 -21.88713 -20.40701 -19.36810 -18.51821 -18.02018 -17.78131 -17.13386 -16.69622 -16.43809 -15.83844 -15.62250 -15.25357 -14.96840 -14.65546 -14.15764 -14.03466 -13.70852 -13.59910 -13.45873 -13.38629 -13.26264 -13.05701 -13.00942 -12.80916 -12.57666 -12.37613 -12.23183 -11.98315 -11.62875 -11.27816 -11.26153 -11.01650 -10.68749 -10.61334 -10.38470 -10.01686 -9.87491 -9.61070 -9.45942 -9.01396 -8.78980 -8.51703 -6.93777 -6.29979 -4.02023 0.53427 1.78385 2.31259 2.60333 2.67809 2.79139 2.91636 3.13261 3.33089 3.49385 3.56186 3.79493 4.15681 4.29980 4.32552 4.56808 4.64141 4.74754 4.75747 4.90862 4.95703 5.01624 5.09260 5.11616 5.14122 5.19844 5.29164 5.32066 5.35957 5.38641 5.40057 5.60942 5.71293 5.72847 5.77313 5.83018 5.95991 5.96995 6.43294 6.96282 7.27916 7.60173 7.87374 7.92891 8.29374 8.40283 9.16258 10.79240 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.003615 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.541758 B = 7743.210140 C =10204.710561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.005 3.995 3 C -0.150 4.150 4 C -0.088 4.088 5 C 0.608 3.392 6 O -0.518 6.518 7 N -0.708 5.708 8 C 0.109 3.891 9 C 0.122 3.878 10 H 0.112 0.888 11 C -0.156 4.156 12 N -0.620 5.620 13 C 0.076 3.924 14 C 0.531 3.469 15 O -0.515 6.515 16 C -0.122 4.122 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.097 3.903 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 O 0.126 5.874 27 N -0.336 5.336 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.183 0.817 32 H 0.413 0.587 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 22.232 6.925 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.153 4.153 3 C -0.173 4.173 4 C -0.154 4.154 5 C 0.392 3.608 6 O -0.394 6.394 7 N -0.359 5.359 8 C -0.015 4.015 9 C 0.018 3.982 10 H 0.130 0.870 11 C -0.215 4.215 12 N -0.356 5.356 13 C -0.067 4.067 14 C 0.319 3.681 15 O -0.390 6.390 16 C -0.273 4.273 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 O 0.051 5.949 27 N -0.036 5.036 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.200 0.800 32 H 0.249 0.751 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.776 20.981 8.502 23.364 hybrid contribution -0.123 0.239 -1.053 1.087 sum -5.899 21.221 7.449 23.251 Atomic orbital electron populations 1.20208 0.85197 1.04225 1.03698 1.23701 0.99508 0.88232 1.03813 1.22838 0.89871 1.01664 1.02900 1.24186 0.97217 0.84402 1.09571 1.16478 0.81094 0.86061 0.77190 1.90862 1.86266 1.11770 1.50505 1.45848 1.05138 1.11553 1.73372 1.21901 0.81609 0.94535 1.03449 1.21315 0.93911 0.90659 0.92276 0.87041 1.22040 0.96225 1.00537 1.02676 1.47949 1.74750 1.05994 1.06944 1.21804 1.02259 1.00313 0.82349 1.20417 0.75118 0.81795 0.90756 1.90709 1.48371 1.76334 1.23550 1.23321 1.05566 0.99174 0.99189 1.84793 1.96419 0.95907 1.14336 1.22295 1.58121 0.94798 0.91675 0.89414 1.24702 0.93152 0.96584 0.96774 1.69935 1.47466 1.08748 1.25505 0.86750 0.80296 0.80417 0.84486 1.19166 1.19950 1.15916 1.85072 1.21505 1.21805 1.66491 1.73831 0.89167 1.24174 1.16412 0.89888 0.89722 0.90087 0.79969 0.75051 0.89663 0.90397 0.91276 0.91077 0.91893 0.92279 0.90412 0.91180 0.88482 0.88426 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.47 36.00 0.38 -0.15 16 2 C 0.00 0.05 7.31 -82.17 -0.60 -0.55 16 3 C -0.15 -1.53 10.92 -38.94 -0.43 -1.95 16 4 C -0.09 -1.04 7.29 -36.31 -0.26 -1.30 16 5 C 0.61 7.18 7.82 -12.48 -0.10 7.08 16 6 O -0.52 -7.00 16.91 5.29 0.09 -6.91 16 7 N -0.71 -7.56 5.38 -61.35 -0.33 -7.89 16 8 C 0.11 0.95 4.92 -4.04 -0.02 0.93 16 9 C 0.12 1.16 2.80 -67.93 -0.19 0.97 16 10 H 0.11 1.27 6.90 -51.93 -0.36 0.91 16 11 C -0.16 -1.13 9.19 37.16 0.34 -0.78 16 12 N -0.62 -7.08 2.24 -173.93 -0.39 -7.47 16 13 C 0.08 0.67 9.30 59.85 0.56 1.23 16 14 C 0.53 8.62 7.40 -10.98 -0.08 8.54 16 15 O -0.52 -10.08 15.19 5.56 0.08 -10.00 16 16 C -0.12 -2.25 4.71 36.01 0.17 -2.08 16 17 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 18 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 19 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 22 Si 0.86 21.66 27.74 -169.99 -4.72 16.95 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 O 0.13 1.71 11.04 15.56 0.17 1.89 16 27 N -0.34 -4.63 12.04 33.52 0.40 -4.22 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.41 4.87 7.69 -40.82 -0.31 4.56 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.62 6.88 -51.93 -0.36 0.27 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.39 7.67 -51.93 -0.40 -0.01 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.73 6.44 -51.93 -0.33 0.40 16 40 H 0.07 0.50 6.53 -51.93 -0.34 0.16 16 41 H 0.10 1.68 7.40 -51.91 -0.38 1.29 16 42 H 0.10 1.70 8.11 -51.92 -0.42 1.27 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -35.13 380.70 -6.05 -41.18 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.87 Total: 1.71 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.02 Total: 0.14 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.46 Total: -45.22 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.35 Total: -15.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.72 Total: 16.95 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.13 -6.05 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508740708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.063 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds