Wall clock time and date at job start Tue Mar 31 2020 23:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 126.70264 * 2 1 4 4 C 1.36824 * 103.84288 * 180.09639 * 3 2 1 5 5 C 1.47519 * 126.94172 * 179.97438 * 4 3 2 6 6 O 1.21581 * 119.99761 * 359.71064 * 5 4 3 7 7 N 1.34773 * 119.99893 * 179.70823 * 5 4 3 8 8 C 1.46501 * 119.99786 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47084 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46884 * 295.00891 * 9 8 7 11 11 C 1.52997 * 109.47127 * 175.00139 * 9 8 7 12 12 N 1.46497 * 109.46631 * 55.00356 * 9 8 7 13 13 C 1.46505 * 120.00341 * 60.00014 * 12 9 8 14 14 C 1.34779 * 119.99848 * 239.99844 * 12 9 8 15 15 O 1.21282 * 120.00232 * 0.02562 * 14 12 9 16 16 C 1.50702 * 120.00153 * 180.02562 * 14 12 9 17 17 S 1.80995 * 109.47490 * 180.02562 * 16 14 12 18 18 C 1.76192 * 100.00289 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00046 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00483 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00616 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99437 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47116 * 90.00386 * 22 20 18 24 24 H 1.48505 * 109.46779 * 209.99833 * 22 20 18 25 25 H 1.48496 * 109.47216 * 329.99696 * 22 20 18 26 26 O 1.34640 * 106.11400 * 359.66714 * 4 3 2 27 27 N 1.20886 * 111.46752 * 0.22956 * 26 4 3 28 28 H 1.09000 * 109.47553 * 270.26004 * 1 2 3 29 29 H 1.09000 * 109.47329 * 30.26477 * 1 2 3 30 30 H 1.08998 * 109.47117 * 150.26021 * 1 2 3 31 31 H 1.07993 * 128.07950 * 359.97438 * 3 2 1 32 32 H 0.96999 * 120.00431 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.46848 * 60.00720 * 8 7 5 34 34 H 1.09001 * 109.47209 * 300.00353 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 37 37 H 1.09004 * 109.47261 * 300.00303 * 11 9 8 38 38 H 1.09005 * 109.46851 * 89.99998 * 13 12 9 39 39 H 1.08997 * 109.47129 * 209.99273 * 13 12 9 40 40 H 1.08993 * 109.46804 * 329.99912 * 13 12 9 41 41 H 1.09009 * 109.47061 * 300.00107 * 16 14 12 42 42 H 1.08996 * 109.47578 * 59.99511 * 16 14 12 43 43 H 0.97002 * 119.99999 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6120 0.6011 -0.0022 5 6 4.8870 1.3431 -0.0037 6 8 4.8828 2.5589 -0.0083 7 7 6.0565 0.6732 0.0000 8 6 7.3227 1.4102 -0.0020 9 6 8.4891 0.4199 0.0024 10 1 8.4843 -0.1428 0.9359 11 6 9.8080 1.1849 -0.1254 12 7 8.3493 -0.5042 -1.1256 13 6 8.3279 0.0114 -2.4968 14 6 8.2403 -1.8289 -0.9020 15 8 8.2575 -2.2557 0.2331 16 6 8.0970 -2.7797 -2.0624 17 16 7.9733 -4.4753 -1.4415 18 6 7.8186 -5.3482 -2.9641 19 1 7.8220 -4.8078 -3.8992 20 6 7.6933 -6.7306 -2.9621 21 7 7.5772 -7.3827 -4.0995 22 14 7.6880 -7.6654 -1.3447 23 1 6.2939 -7.7868 -0.8477 24 1 8.2586 -9.0203 -1.5543 25 1 8.5074 -6.9322 -0.3466 26 8 3.4539 -0.7360 0.0041 27 7 2.2847 -1.0432 0.0052 28 1 -0.3634 0.0047 1.0276 29 1 -0.3634 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5098 31 1 2.0678 2.1746 -0.0004 32 1 6.0599 -0.2967 0.0034 33 1 7.3775 2.0406 0.8854 34 1 7.3790 2.0333 -0.8946 35 1 10.6389 0.4794 -0.1227 36 1 9.9119 1.8725 0.7139 37 1 9.8126 1.7476 -1.0589 38 1 9.3449 0.0465 -2.8876 39 1 7.7210 -0.6436 -3.1218 40 1 7.9021 1.0147 -2.5010 41 1 7.1969 -2.5327 -2.6255 42 1 8.9674 -2.6931 -2.7128 43 1 7.4900 -8.3488 -4.0980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508740708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:23 Heat of formation + Delta-G solvation = -31.862189 kcal Electronic energy + Delta-G solvation = -27324.600694 eV Core-core repulsion = 23305.917558 eV Total energy + Delta-G solvation = -4018.683136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.12286 -41.41822 -40.54849 -37.79670 -36.06012 -35.40566 -34.67278 -33.55577 -32.80856 -30.27585 -29.66636 -27.87987 -27.85002 -27.82493 -24.71832 -23.92345 -22.87487 -21.28062 -20.47279 -19.65790 -19.36936 -18.93651 -18.37761 -17.61677 -17.32750 -17.13721 -16.87908 -16.70555 -16.31609 -15.78962 -15.56060 -14.95991 -14.83413 -14.61554 -14.57303 -14.25377 -14.19136 -14.02088 -13.86479 -13.69322 -13.53021 -13.39740 -13.25086 -13.08463 -13.01976 -12.85646 -12.59728 -12.40644 -11.97321 -11.86161 -11.62385 -11.17494 -11.16926 -10.94634 -10.92422 -10.51916 -10.32166 -9.78101 -8.98964 -8.51835 -6.21914 -0.35778 0.96756 0.97663 1.31076 1.43799 1.47205 1.49952 1.53687 1.77514 1.98478 2.13053 2.24425 2.68819 2.86817 3.06134 3.34685 3.48143 3.68600 3.81015 3.95171 4.04447 4.11993 4.23176 4.24360 4.30051 4.43968 4.56618 4.63311 4.66264 4.70790 4.72112 4.77589 4.78509 4.93902 5.03772 5.07734 5.16078 5.31984 5.53734 5.70429 6.04536 6.11131 6.18391 6.69221 6.93733 6.99745 7.05992 8.60627 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.008763 B = 0.003615 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.541758 B = 7743.210140 C =10204.710561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.141 4.141 4 C -0.103 4.103 5 C 0.613 3.387 6 O -0.535 6.535 7 N -0.706 5.706 8 C 0.111 3.889 9 C 0.124 3.876 10 H 0.091 0.909 11 C -0.149 4.149 12 N -0.603 5.603 13 C 0.067 3.933 14 C 0.535 3.465 15 O -0.555 6.555 16 C -0.108 4.108 17 S -0.174 6.174 18 C -0.528 4.528 19 H 0.061 0.939 20 C 0.047 3.953 21 N -0.917 5.917 22 Si 0.912 3.088 23 H -0.265 1.265 24 H -0.259 1.259 25 H -0.235 1.235 26 O 0.099 5.901 27 N -0.375 5.375 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.077 0.923 31 H 0.209 0.791 32 H 0.407 0.593 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 24.823 7.516 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C -0.163 4.163 4 C -0.168 4.168 5 C 0.396 3.604 6 O -0.413 6.413 7 N -0.356 5.356 8 C -0.012 4.012 9 C 0.021 3.979 10 H 0.109 0.891 11 C -0.208 4.208 12 N -0.338 5.338 13 C -0.075 4.075 14 C 0.322 3.678 15 O -0.433 6.433 16 C -0.259 4.259 17 S 0.053 5.947 18 C -0.675 4.675 19 H 0.080 0.920 20 C -0.158 4.158 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.189 1.189 24 H -0.183 1.183 25 H -0.159 1.159 26 O 0.029 5.971 27 N -0.080 5.080 28 H 0.116 0.884 29 H 0.130 0.870 30 H 0.096 0.904 31 H 0.226 0.774 32 H 0.242 0.758 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.962 23.622 9.069 25.996 hybrid contribution -0.084 -0.362 -1.302 1.354 sum -6.047 23.260 7.767 25.257 Atomic orbital electron populations 1.20426 0.82551 1.05399 1.05036 1.24376 1.01103 0.87628 1.01568 1.23234 0.88997 1.02695 1.01346 1.24412 0.98053 0.84156 1.10224 1.16432 0.81250 0.85768 0.76913 1.90848 1.86501 1.12243 1.51712 1.45944 1.05676 1.11297 1.72713 1.22042 0.80116 0.94150 1.04889 1.21461 0.95774 0.90234 0.90459 0.89119 1.22010 0.93841 1.00327 1.04599 1.47901 1.72533 1.04463 1.08898 1.22074 1.03553 1.01366 0.80490 1.19972 0.75464 0.83171 0.89194 1.90698 1.50779 1.77362 1.24497 1.23295 1.06762 0.95472 1.00342 1.84689 1.96544 1.00432 1.13044 1.22457 1.57409 0.95308 0.92363 0.92027 1.25536 0.92928 0.97571 0.99813 1.70013 1.48694 1.09403 1.27430 0.85900 0.80366 0.79670 0.80649 1.18947 1.18344 1.15881 1.85029 1.21742 1.22658 1.67656 1.73828 0.89618 1.25864 1.18658 0.88352 0.87028 0.90399 0.77383 0.75754 0.88308 0.88780 0.92560 0.89044 0.90056 0.90514 0.91039 0.88587 0.87360 0.87150 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.47 71.24 0.75 -0.15 16 2 C 0.01 0.22 7.31 43.56 0.32 0.54 16 3 C -0.14 -2.65 10.92 22.68 0.25 -2.40 16 4 C -0.10 -2.38 7.29 24.39 0.18 -2.21 16 5 C 0.61 13.78 7.82 86.69 0.68 14.46 16 6 O -0.53 -13.49 16.91 -3.97 -0.07 -13.56 16 7 N -0.71 -14.30 5.38 -466.29 -2.51 -16.81 16 8 C 0.11 1.66 4.92 86.38 0.42 2.08 16 9 C 0.12 2.11 2.80 44.99 0.13 2.23 16 10 H 0.09 2.00 6.90 -2.39 -0.02 1.98 16 11 C -0.15 -1.71 9.19 71.98 0.66 -1.04 16 12 N -0.60 -12.78 2.24 -822.58 -1.85 -14.63 16 13 C 0.07 1.00 9.30 127.77 1.19 2.19 16 14 C 0.53 17.09 7.40 87.66 0.65 17.74 16 15 O -0.56 -21.91 15.19 -3.04 -0.05 -21.96 16 16 C -0.11 -3.95 4.71 71.24 0.34 -3.62 16 17 S -0.17 -8.67 18.55 -56.49 -1.05 -9.72 16 18 C -0.53 -30.64 10.04 67.95 0.68 -29.96 16 19 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 20 C 0.05 2.76 5.50 84.86 0.47 3.22 16 21 N -0.92 -56.02 13.97 21.65 0.30 -55.72 16 22 Si 0.91 45.18 27.74 68.60 1.90 47.09 16 23 H -0.26 -12.91 7.11 99.48 0.71 -12.20 16 24 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 26 O 0.10 2.76 11.04 65.85 0.73 3.49 16 27 N -0.38 -10.44 12.04 -48.87 -0.59 -11.03 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.41 9.54 7.69 -92.71 -0.71 8.82 16 33 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.16 6.88 -2.39 -0.02 1.14 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.66 7.67 -2.38 -0.02 0.64 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.07 1.21 6.44 -2.39 -0.02 1.19 16 40 H 0.10 0.99 6.53 -2.39 -0.02 0.98 16 41 H 0.11 3.72 7.40 -2.39 -0.02 3.70 16 42 H 0.11 3.76 8.11 -2.40 -0.02 3.74 16 43 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -78.33 380.70 3.83 -74.51 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.30 Total: 15.24 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.70 Total: 3.09 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.64 Total: -98.19 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: 0.61 Total: -32.02 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.05 Total: -9.72 kcal Total: -78.33 3.83 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508740708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.643 kcal (2) G-P(sol) polarization free energy of solvation -78.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds