Wall clock time and date at job start Tue Mar 31 2020 23:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 C 1.52997 * 109.46885 * 240.00127 * 2 1 3 5 5 N 1.46501 * 109.47075 * 119.99880 * 2 1 3 6 6 S 1.65604 * 119.99617 * 67.83963 * 5 2 1 7 7 O 1.42093 * 104.27928 * 313.34861 * 6 5 2 8 8 O 1.42106 * 104.27425 * 185.49335 * 6 5 2 9 9 C 1.81402 * 104.45022 * 69.42295 * 6 5 2 10 10 C 1.50695 * 109.46859 * 172.75471 * 9 6 5 11 11 O 1.21282 * 120.00322 * 359.97438 * 10 9 6 12 12 N 1.34778 * 120.00165 * 179.97438 * 10 9 6 13 13 C 1.39264 * 120.00452 * 185.52284 * 12 10 9 14 14 C 1.39676 * 119.57393 * 12.51475 * 13 12 10 15 15 C 1.38651 * 119.49707 * 180.02562 * 14 13 12 16 16 C 1.38348 * 118.66583 * 359.74091 * 15 14 13 17 17 C 1.40574 * 119.13511 * 0.49905 * 16 15 14 18 18 C 1.41334 * 119.79248 * 179.76911 * 17 16 15 19 19 H 1.08007 * 119.99766 * 8.46542 * 18 17 16 20 20 C 1.40024 * 120.00144 * 188.46706 * 18 17 16 21 21 N 1.30747 * 119.99762 * 190.03311 * 20 18 17 22 22 Si 1.86800 * 119.99995 * 10.02579 * 20 18 17 23 23 H 1.48504 * 109.47094 * 270.00283 * 22 20 18 24 24 H 1.48496 * 109.47107 * 30.00560 * 22 20 18 25 25 H 1.48501 * 109.46760 * 150.00628 * 22 20 18 26 26 N 1.31904 * 119.57656 * 192.52696 * 13 12 10 27 27 H 1.09002 * 109.46684 * 294.12579 * 1 2 3 28 28 H 1.09001 * 109.46942 * 54.11887 * 1 2 3 29 29 H 1.08997 * 109.47241 * 174.12114 * 1 2 3 30 30 H 1.09001 * 109.47294 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47192 * 300.00208 * 3 2 1 32 32 H 1.08998 * 109.47319 * 59.99719 * 3 2 1 33 33 H 1.09003 * 109.47204 * 316.00645 * 4 2 1 34 34 H 1.08999 * 109.47645 * 76.00366 * 4 2 1 35 35 H 1.09005 * 109.47175 * 196.00545 * 4 2 1 36 36 H 0.96996 * 119.99854 * 247.83825 * 5 2 1 37 37 H 1.09001 * 109.47140 * 52.75980 * 9 6 5 38 38 H 1.08993 * 109.47046 * 292.75660 * 9 6 5 39 39 H 0.97005 * 119.99812 * 5.52897 * 12 10 9 40 40 H 1.08003 * 120.25289 * 359.97438 * 14 13 12 41 41 H 1.07995 * 120.66394 * 180.02562 * 15 14 13 42 42 H 1.08005 * 120.43142 * 180.24786 * 16 15 14 43 43 H 0.96999 * 120.00219 * 354.90799 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 16 1.7843 -2.3214 1.3643 7 8 0.4195 -2.5168 1.0206 8 8 2.2591 -2.6106 2.6720 9 6 2.8683 -3.0654 0.1145 10 6 2.8789 -4.5626 0.2860 11 8 2.2205 -5.0770 1.1651 12 7 3.6201 -5.3300 -0.5375 13 6 3.5416 -6.7180 -0.4545 14 6 2.5156 -7.3072 0.2879 15 6 2.4393 -8.6892 0.3699 16 6 3.3863 -9.4468 -0.2959 17 6 4.3975 -8.7943 -1.0224 18 6 5.3748 -9.5547 -1.7037 19 1 5.2680 -10.6267 -1.7807 20 6 6.4815 -8.9182 -2.2789 21 7 7.2794 -9.5842 -3.0721 22 14 6.8177 -7.1175 -1.9130 23 1 6.1227 -6.2705 -2.9155 24 1 6.3184 -6.7868 -0.5542 25 1 8.2794 -6.8637 -1.9787 26 7 4.4373 -7.4591 -1.0776 27 1 -0.3633 0.4201 0.9379 28 1 -0.3633 0.6023 -0.8327 29 1 -0.3633 -1.0222 -0.1053 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.4640 -1.6339 -1.4025 34 1 1.9268 -0.0704 -2.1163 35 1 3.0925 -0.9733 -1.1191 36 1 2.4788 -0.1926 1.8897 37 1 3.8803 -2.6788 0.2347 38 1 2.5000 -2.8163 -0.8806 39 1 4.2083 -4.9156 -1.1881 40 1 1.7878 -6.6911 0.7948 41 1 1.6538 -9.1647 0.9383 42 1 3.3515 -10.5255 -0.2546 43 1 7.1484 -10.5362 -3.2040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434327708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:01 Heat of formation + Delta-G solvation = -66.750152 kcal Electronic energy + Delta-G solvation = -28089.028309 eV Core-core repulsion = 24068.832317 eV Total energy + Delta-G solvation = -4020.195991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45087 -38.54063 -38.29840 -37.07482 -36.04309 -34.84439 -33.62413 -31.52956 -31.28107 -31.16280 -29.24674 -27.80336 -27.51957 -25.38915 -22.76243 -21.87802 -21.06361 -20.18777 -19.48841 -18.54054 -18.00373 -17.62214 -16.86275 -16.79502 -16.13007 -15.77096 -15.17901 -15.02735 -14.72184 -14.63550 -14.29721 -14.10720 -13.87281 -13.45259 -13.31440 -13.14591 -12.78539 -12.59613 -12.53018 -12.31655 -12.26706 -12.17064 -11.95462 -11.90432 -11.84905 -11.73823 -11.42331 -11.23589 -10.99554 -10.93607 -10.46937 -10.14178 -9.99669 -9.79472 -9.39300 -9.22164 -8.60841 -7.82047 -7.53774 -7.30513 -4.81817 -0.04975 1.91561 2.45180 2.59868 2.81387 2.92903 3.39539 3.54990 3.66223 3.86032 3.94224 4.14002 4.27501 4.28898 4.33577 4.50390 4.54182 4.61906 4.76771 4.91239 5.04402 5.10744 5.25187 5.41176 5.47119 5.50460 5.59648 5.64935 5.77037 5.88412 5.93405 6.15938 6.34403 6.44285 6.47679 6.63493 7.01335 7.05499 7.36403 7.42658 7.56384 7.68112 7.98997 8.08982 8.29164 8.59053 9.32402 9.94056 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.003133 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.443696 B = 8934.016795 C = 9856.738139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.171 3.829 3 C -0.149 4.149 4 C -0.201 4.201 5 N -1.113 6.113 6 S 2.647 3.353 7 O -0.935 6.935 8 O -0.938 6.938 9 C -0.690 4.690 10 C 0.544 3.456 11 O -0.508 6.508 12 N -0.637 5.637 13 C 0.374 3.626 14 C -0.317 4.317 15 C -0.036 4.036 16 C -0.272 4.272 17 C 0.272 3.728 18 C -0.477 4.477 19 H 0.084 0.916 20 C 0.045 3.955 21 N -0.806 5.806 22 Si 1.141 2.859 23 H -0.290 1.290 24 H -0.270 1.270 25 H -0.329 1.329 26 N -0.592 5.592 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.418 0.582 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.411 0.589 40 H 0.152 0.848 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 22.401 2.233 23.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.083 3.917 3 C -0.208 4.208 4 C -0.259 4.259 5 N -0.874 5.874 6 S 2.734 3.266 7 O -0.925 6.925 8 O -0.928 6.928 9 C -0.816 4.816 10 C 0.328 3.672 11 O -0.385 6.385 12 N -0.280 5.280 13 C 0.143 3.857 14 C -0.342 4.342 15 C -0.060 4.060 16 C -0.294 4.294 17 C 0.148 3.852 18 C -0.509 4.509 19 H 0.102 0.898 20 C -0.176 4.176 21 N -0.428 5.428 22 Si 0.975 3.025 23 H -0.218 1.218 24 H -0.197 1.197 25 H -0.262 1.262 26 N -0.317 5.317 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.253 0.747 37 H 0.181 0.819 38 H 0.188 0.812 39 H 0.247 0.753 40 H 0.169 0.831 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.192 23.008 2.389 24.224 hybrid contribution -0.454 -1.466 -0.051 1.535 sum -7.645 21.543 2.338 22.978 Atomic orbital electron populations 1.22653 0.93367 1.05470 1.02562 1.20183 0.94701 0.93494 0.83348 1.22068 1.01727 0.93878 1.03133 1.22953 1.02162 1.02123 0.98665 1.56001 1.74395 1.27025 1.29937 1.04147 0.75326 0.72457 0.74692 1.93562 1.29584 1.84610 1.84725 1.93611 1.82513 1.83025 1.33640 1.31767 1.21423 1.04177 1.24247 1.19079 0.80144 0.86336 0.81631 1.90710 1.42533 1.73058 1.32172 1.43045 1.42870 1.05435 1.36677 1.18081 0.91488 0.81654 0.94463 1.21939 1.04278 0.95554 1.12388 1.20967 0.96308 0.93400 0.95373 1.21656 1.01255 0.99104 1.07430 1.18213 0.91992 0.85799 0.89215 1.20696 1.04589 0.96029 1.29601 0.89776 1.27694 0.91300 1.09455 0.89195 1.70609 1.36483 1.11540 1.24181 0.82211 0.70883 0.70930 0.78464 1.21771 1.19721 1.26159 1.66293 1.26985 1.07589 1.30807 0.91830 0.91609 0.88839 0.91697 0.90909 0.91671 0.91199 0.89393 0.90659 0.74716 0.81871 0.81214 0.75348 0.83128 0.87358 0.87550 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 8.13 37.16 0.30 -1.06 16 2 C 0.17 1.05 1.13 -131.82 -0.15 0.90 16 3 C -0.15 -0.60 8.53 37.16 0.32 -0.29 16 4 C -0.20 -1.03 6.79 37.16 0.25 -0.78 16 5 N -1.11 -8.13 5.46 0.54 0.00 -8.13 16 6 S 2.65 31.37 4.39 -107.50 -0.47 30.90 16 7 O -0.94 -13.43 14.95 -57.54 -0.86 -14.29 16 8 O -0.94 -14.83 17.80 -60.82 -1.08 -15.92 16 9 C -0.69 -6.94 4.99 36.00 0.18 -6.76 16 10 C 0.54 8.87 7.73 -10.99 -0.08 8.78 16 11 O -0.51 -10.11 12.21 2.39 0.03 -10.08 16 12 N -0.64 -11.41 5.41 -11.40 -0.06 -11.47 16 13 C 0.37 8.51 7.57 -154.98 -1.17 7.33 16 14 C -0.32 -7.23 8.94 -38.89 -0.35 -7.57 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.27 -6.48 9.83 -38.66 -0.38 -6.86 16 17 C 0.27 7.08 6.32 -85.00 -0.54 6.54 16 18 C -0.48 -12.83 9.55 -37.74 -0.36 -13.19 16 19 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 20 C 0.04 1.20 5.52 -17.34 -0.10 1.10 16 21 N -0.81 -21.62 13.65 55.55 0.76 -20.86 16 22 Si 1.14 26.75 26.11 -169.99 -4.44 22.31 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.39 6.11 56.52 0.35 -6.05 16 25 H -0.33 -7.62 7.11 56.52 0.40 -7.22 16 26 N -0.59 -14.74 4.56 -10.26 -0.05 -14.79 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.91 5.65 -51.93 -0.29 0.62 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.40 6.17 -51.93 -0.32 0.08 16 34 H 0.09 0.31 8.04 -51.93 -0.42 -0.10 16 35 H 0.07 0.28 6.87 -51.93 -0.36 -0.08 16 36 H 0.42 2.27 8.58 -34.48 -0.30 1.98 16 37 H 0.16 1.02 8.13 -51.92 -0.42 0.60 16 38 H 0.17 1.18 4.79 -51.93 -0.25 0.93 16 39 H 0.41 6.10 8.83 -40.82 -0.36 5.74 16 40 H 0.15 3.37 4.92 -54.25 -0.27 3.10 16 41 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 42 H 0.11 2.36 8.06 -52.48 -0.42 1.93 16 43 H 0.28 7.31 8.73 -40.82 -0.36 6.95 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -35.83 355.61 -8.86 -44.69 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.57 Total: 5.32 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.48 Total: -13.04 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.65 Total: -55.24 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.91 Total: -40.29 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.44 Total: 22.31 kcal Atomic # 16 Polarization: 31.37 SS G_CDS: -0.47 Total: 30.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.83 -8.86 -44.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434327708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.063 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds