Wall clock time and date at job start Tue Mar 31 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21288 * 120.00159 * 2 1 4 4 N 1.34775 * 120.00115 * 179.97438 * 2 1 3 5 5 C 1.39925 * 120.00271 * 185.27281 * 4 2 1 6 6 C 1.38878 * 120.06776 * 33.29408 * 5 4 2 7 7 C 1.38109 * 119.92637 * 180.02562 * 6 5 4 8 8 C 1.38280 * 120.07144 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.92718 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.47040 * 90.00554 * 9 8 7 11 11 S 1.65598 * 120.00061 * 164.99631 * 10 9 8 12 12 O 1.42098 * 106.40077 * 178.53785 * 11 10 9 13 13 O 1.42097 * 106.40210 * 311.46221 * 11 10 9 14 14 N 1.65609 * 107.21597 * 65.00232 * 11 10 9 15 15 C 1.46501 * 119.99418 * 269.99940 * 14 11 10 16 16 C 1.46496 * 120.00024 * 89.99607 * 14 11 10 17 17 C 1.50703 * 109.46955 * 95.00131 * 16 14 11 18 18 H 1.08007 * 119.99699 * 359.97438 * 17 16 14 19 19 C 1.37871 * 120.00029 * 179.97438 * 17 16 14 20 20 N 1.31511 * 119.99978 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00104 * 179.97438 * 19 17 16 22 22 H 1.48513 * 109.47054 * 60.00398 * 21 19 17 23 23 H 1.48495 * 109.47322 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47436 * 300.00569 * 21 19 17 25 25 C 1.38281 * 120.14336 * 0.26198 * 8 7 6 26 26 C 1.38113 * 120.07010 * 359.47992 * 25 8 7 27 27 H 1.08997 * 109.47026 * 240.00269 * 1 2 3 28 28 H 1.09005 * 109.46769 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47288 * 120.00439 * 1 2 3 30 30 H 0.96998 * 119.99590 * 5.27901 * 4 2 1 31 31 H 1.08000 * 120.03178 * 0.02562 * 6 5 4 32 32 H 1.07995 * 119.96211 * 179.97438 * 7 6 5 33 33 H 1.09005 * 109.47083 * 209.99955 * 9 8 7 34 34 H 1.08994 * 109.47304 * 330.00149 * 9 8 7 35 35 H 0.97006 * 119.99962 * 344.99760 * 10 9 8 36 36 H 1.08994 * 109.47316 * 90.00228 * 15 14 11 37 37 H 1.09006 * 109.46546 * 209.99866 * 15 14 11 38 38 H 1.08995 * 109.47203 * 329.99456 * 15 14 11 39 39 H 1.08999 * 109.46988 * 214.99607 * 16 14 11 40 40 H 1.09002 * 109.47216 * 335.00026 * 16 14 11 41 41 H 0.97007 * 120.00070 * 179.97438 * 20 19 17 42 42 H 1.08002 * 119.97003 * 179.74423 * 25 8 7 43 43 H 1.07996 * 120.03881 * 180.25816 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5757 -1.1697 0.1119 6 6 4.2150 -0.1974 0.8700 7 6 5.5919 -0.2024 0.9774 8 6 6.3338 -1.1744 0.3317 9 6 7.8361 -1.1764 0.4507 10 7 8.2335 -1.9866 1.6048 11 16 9.8066 -2.4764 1.7704 12 8 9.8742 -3.2037 2.9893 13 8 10.1906 -3.0237 0.5165 14 7 10.7238 -1.1146 1.9869 15 6 11.2900 -0.4210 0.8274 16 6 10.9689 -0.6037 3.3379 17 6 12.2850 -1.1348 3.8447 18 1 12.8792 -1.7880 3.2228 19 6 12.7304 -0.7868 5.1022 20 7 12.0066 0.0081 5.8596 21 14 14.3614 -1.4457 5.7308 22 1 15.4548 -1.0040 4.8280 23 1 14.6099 -0.9277 7.1001 24 1 14.3161 -2.9297 5.7641 25 6 5.7006 -2.1410 -0.4279 26 6 4.3237 -2.1448 -0.5350 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 1.6990 -2.0054 -0.0764 31 1 3.6360 0.5617 1.3748 32 1 6.0897 0.5536 1.5665 33 1 8.2719 -1.5969 -0.4556 34 1 8.1914 -0.1547 0.5845 35 1 7.5750 -2.2362 2.2720 36 1 10.5848 0.3311 0.4739 37 1 12.2239 0.0628 1.1139 38 1 11.4828 -1.1407 0.0319 39 1 11.0017 0.4856 3.3139 40 1 10.1665 -0.9286 4.0003 41 1 12.3199 0.2527 6.7446 42 1 6.2831 -2.8963 -0.9344 43 1 3.8294 -2.9024 -1.1250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027969734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:45 Heat of formation + Delta-G solvation = -83.626313 kcal Electronic energy + Delta-G solvation = -26992.894269 eV Core-core repulsion = 22971.966472 eV Total energy + Delta-G solvation = -4020.927797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83361 -38.97182 -36.60555 -35.87577 -35.45174 -35.13144 -34.27175 -32.40902 -31.19637 -31.10959 -29.19428 -27.74979 -25.35569 -24.99470 -23.27022 -22.26872 -21.90724 -20.71334 -18.92676 -18.16995 -17.35860 -17.31261 -16.79777 -16.50641 -16.01317 -15.92951 -15.40969 -15.00419 -14.75292 -14.61855 -14.21726 -13.77232 -13.71025 -13.46900 -13.28644 -13.25172 -13.14675 -12.83388 -12.66551 -12.26693 -12.13326 -12.06604 -11.58396 -11.49599 -11.37975 -11.18478 -11.13919 -11.03510 -10.69348 -10.64904 -10.47329 -10.22463 -10.01572 -9.76034 -9.30864 -9.10021 -8.42111 -8.35333 -8.03488 -6.04099 -4.08061 0.88493 1.23135 1.34622 2.18176 2.65550 3.35462 3.38911 3.42991 3.45867 3.74654 4.18749 4.24376 4.46803 4.60379 4.65404 4.72949 4.80004 4.82471 5.07143 5.15398 5.21181 5.23856 5.31158 5.37347 5.47209 5.56102 5.68622 5.87797 5.95250 6.00691 6.05775 6.09835 6.25817 6.32941 6.48536 6.58962 6.79926 6.95741 7.13535 7.29252 7.44998 7.64146 7.67533 7.93308 8.22923 8.94005 9.56938 11.04446 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.002321 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.554740 B =12062.898820 C =12721.020559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.523 6.523 4 N -0.676 5.676 5 C 0.144 3.856 6 C -0.122 4.122 7 C -0.081 4.081 8 C -0.107 4.107 9 C 0.163 3.837 10 N -1.130 6.130 11 S 2.782 3.218 12 O -0.963 6.963 13 O -0.999 6.999 14 N -0.996 5.996 15 C 0.094 3.906 16 C 0.258 3.742 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.275 1.275 25 C -0.082 4.082 26 C -0.148 4.148 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.035 0.965 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.130 0.870 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.775 -1.441 -13.975 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.296 3.704 3 O -0.398 6.398 4 N -0.321 5.321 5 C 0.050 3.950 6 C -0.142 4.142 7 C -0.100 4.100 8 C -0.109 4.109 9 C 0.037 3.963 10 N -0.889 5.889 11 S 2.790 3.210 12 O -0.947 6.947 13 O -0.982 6.982 14 N -0.839 5.839 15 C -0.053 4.053 16 C 0.136 3.864 17 C -0.569 4.569 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.101 4.101 26 C -0.168 4.168 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.247 0.753 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.148 0.852 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.943 -1.392 -13.954 26.041 hybrid contribution 0.139 -0.428 0.729 0.857 sum -21.803 -1.820 -13.225 25.566 Atomic orbital electron populations 1.21934 0.90668 1.06086 1.04579 1.21037 0.90933 0.83167 0.75232 1.90774 1.70584 1.31197 1.47225 1.43624 1.05422 1.09921 1.73176 1.17778 0.82495 0.97554 0.97205 1.21112 0.94768 0.99464 0.98896 1.21061 0.93145 0.97907 0.97926 1.19887 0.95280 0.96375 0.99395 1.20073 0.91201 0.95924 0.89134 1.56326 1.29577 1.69595 1.33398 1.01917 0.72498 0.73651 0.72953 1.93645 1.85537 1.69941 1.45598 1.93515 1.82227 1.76927 1.45545 1.57593 1.64435 1.47486 1.14369 1.21377 0.99553 0.96784 0.87594 1.19044 0.97076 0.95385 0.74939 1.21462 1.04985 1.29762 1.00642 0.92226 1.24934 0.97677 0.94997 0.96466 1.69911 1.38062 1.35313 1.10235 0.86571 0.83579 0.79576 0.77794 1.20183 1.21201 1.20009 1.20935 0.93601 0.97785 0.97795 1.20842 0.94055 1.00459 1.01491 0.88950 0.88507 0.89116 0.75326 0.84819 0.85072 0.89821 0.90960 0.75396 0.94308 0.90394 0.91550 0.94710 0.94425 0.92654 0.85162 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.32 36.01 0.37 -0.22 16 2 C 0.51 4.07 7.68 -10.98 -0.08 3.99 16 3 O -0.52 -6.66 14.77 5.55 0.08 -6.58 16 4 N -0.68 -4.63 5.34 -9.86 -0.05 -4.68 16 5 C 0.14 1.41 6.28 -83.69 -0.53 0.88 16 6 C -0.12 -1.41 8.66 -39.39 -0.34 -1.75 16 7 C -0.08 -0.93 9.69 -39.61 -0.38 -1.31 16 8 C -0.11 -1.22 5.28 -104.59 -0.55 -1.77 16 9 C 0.16 2.01 6.37 -5.19 -0.03 1.98 16 10 N -1.13 -16.65 6.05 -11.65 -0.07 -16.72 16 11 S 2.78 54.42 6.10 -107.50 -0.66 53.77 16 12 O -0.96 -23.01 17.11 -57.17 -0.98 -23.98 16 13 O -1.00 -20.35 16.21 -57.17 -0.93 -21.28 16 14 N -1.00 -20.48 3.23 -123.05 -0.40 -20.88 16 15 C 0.09 1.58 10.68 59.85 0.64 2.22 16 16 C 0.26 6.46 5.08 -5.19 -0.03 6.43 16 17 C -0.53 -14.95 9.38 -34.44 -0.32 -15.27 16 18 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 21 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.08 -0.83 9.69 -39.61 -0.38 -1.21 16 26 C -0.15 -1.32 9.96 -39.39 -0.39 -1.71 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.10 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.41 1.31 8.82 -40.82 -0.36 0.95 16 31 H 0.13 1.63 6.41 -52.49 -0.34 1.29 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.08 0.99 7.69 -51.93 -0.40 0.59 16 34 H 0.07 0.83 8.08 -51.93 -0.42 0.42 16 35 H 0.41 5.59 8.65 -34.47 -0.30 5.30 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.07 1.06 7.02 -51.93 -0.36 0.70 16 39 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.04 1.00 7.61 -51.93 -0.40 0.61 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -37.60 380.78 -9.59 -47.20 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.92 Total: 2.09 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.13 Total: -6.08 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: 0.22 Total: -67.85 kcal Atomic # 8 Polarization: -50.02 SS G_CDS: -1.82 Total: -51.84 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 54.42 SS G_CDS: -0.66 Total: 53.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.60 -9.59 -47.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027969734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.431 kcal (2) G-P(sol) polarization free energy of solvation -37.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds