Wall clock time and date at job start Tue Mar 31 2020 23:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46891 * 2 1 4 4 O 1.45197 * 109.47107 * 239.99071 * 2 1 3 5 5 C 1.34711 * 116.99378 * 90.00765 * 4 2 1 6 6 O 1.21464 * 120.00296 * 359.97438 * 5 4 2 7 7 C 1.47765 * 119.99463 * 179.97438 * 5 4 2 8 8 C 1.39972 * 120.03391 * 359.72038 * 7 5 4 9 9 C 1.38319 * 120.35322 * 179.76352 * 8 7 5 10 10 C 1.37759 * 120.41648 * 0.51806 * 9 8 7 11 11 C 1.40760 * 120.05305 * 359.73926 * 10 9 8 12 12 C 1.41439 * 120.17469 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99710 * 150.17838 * 12 11 10 14 14 C 1.39938 * 119.99886 * 330.17437 * 12 11 10 15 15 N 1.30829 * 119.99911 * 161.73694 * 14 12 11 16 16 Si 1.86800 * 120.00158 * 341.72911 * 14 12 11 17 17 H 1.48503 * 109.46659 * 95.41518 * 16 14 12 18 18 H 1.48492 * 109.47311 * 215.41189 * 16 14 12 19 19 H 1.48497 * 109.47082 * 335.41798 * 16 14 12 20 20 C 1.39052 * 120.03138 * 179.97438 * 7 5 4 21 21 C 1.50708 * 109.46670 * 119.99405 * 2 1 3 22 22 O 1.21263 * 119.99818 * 115.00137 * 21 2 1 23 23 N 1.34773 * 120.00244 * 294.99873 * 21 2 1 24 24 C 1.38938 * 120.00112 * 179.97438 * 23 21 2 25 25 N 1.32407 * 119.20329 * 359.73246 * 24 23 21 26 26 C 1.32268 * 120.74885 * 179.75752 * 25 24 23 27 27 C 1.38609 * 119.18614 * 0.50826 * 26 25 24 28 28 C 1.38617 * 118.53879 * 359.74638 * 27 26 25 29 29 N 1.32272 * 119.17890 * 0.02562 * 28 27 26 30 30 H 1.09000 * 109.47282 * 300.00565 * 1 2 3 31 31 H 1.09004 * 109.46603 * 60.00322 * 1 2 3 32 32 H 1.08999 * 109.47466 * 180.02562 * 1 2 3 33 33 H 1.08001 * 119.82335 * 0.02562 * 8 7 5 34 34 H 1.07995 * 119.79118 * 180.25299 * 9 8 7 35 35 H 1.08004 * 119.97422 * 179.76381 * 10 9 8 36 36 H 0.96993 * 119.99829 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.19965 * 359.95196 * 20 7 5 38 38 H 0.96999 * 119.99956 * 0.02562 * 23 21 2 39 39 H 1.08005 * 120.40699 * 180.25450 * 26 25 24 40 40 H 1.08001 * 120.73618 * 179.77299 * 27 26 25 41 41 H 1.07993 * 120.40758 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6847 -1.1854 5 6 2.2180 0.0665 -2.2849 6 8 1.9971 1.2605 -2.2543 7 6 2.7104 -0.5622 -3.5282 8 6 2.9707 -1.9371 -3.5624 9 6 3.4271 -2.5333 -4.7241 10 6 3.6410 -1.7798 -5.8573 11 6 3.3900 -0.3948 -5.8406 12 6 3.6082 0.3812 -7.0028 13 1 3.0129 1.2643 -7.1820 14 6 4.5955 0.0048 -7.9203 15 7 4.5723 0.4814 -9.1385 16 14 5.9467 -1.1780 -7.4058 17 1 5.5696 -2.5602 -7.7964 18 1 7.2160 -0.8024 -8.0785 19 1 6.1282 -1.1118 -5.9334 20 6 2.9207 0.2123 -4.6637 21 6 2.0323 -0.7103 1.2306 22 8 2.6528 -1.7465 1.1218 23 7 1.7918 -0.1940 2.4521 24 6 2.2544 -0.8492 3.5866 25 7 2.9251 -1.9825 3.4498 26 6 3.3835 -2.6291 4.5087 27 6 3.1448 -2.1118 5.7723 28 6 2.4348 -0.9260 5.8791 29 7 2.0088 -0.3281 4.7788 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 2.8102 -2.5364 -2.6784 34 1 3.6211 -3.5956 -4.7415 35 1 4.0012 -2.2521 -6.7593 36 1 5.2564 0.2202 -9.7745 37 1 2.7244 1.2741 -4.6411 38 1 1.2952 0.6346 2.5392 39 1 3.9335 -3.5511 4.3905 40 1 3.5044 -2.6210 6.6542 41 1 2.2320 -0.4958 6.8486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525597.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:57 Heat of formation + Delta-G solvation = -26.943068 kcal Electronic energy + Delta-G solvation = -27799.567077 eV Core-core repulsion = 23645.653299 eV Total energy + Delta-G solvation = -4153.913778 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67795 -40.51425 -39.41561 -37.70016 -36.16032 -35.38209 -34.06233 -33.74051 -32.55216 -31.02221 -30.55179 -30.08336 -25.81266 -25.36037 -25.04481 -24.28700 -23.09515 -21.09567 -20.71315 -20.31495 -19.06906 -18.35134 -17.68594 -16.98439 -16.69309 -16.29497 -16.16274 -16.07491 -15.62307 -15.37990 -14.87432 -14.68755 -14.60736 -14.13084 -13.86591 -13.82759 -13.47572 -13.10785 -12.81761 -12.77270 -12.53249 -12.05954 -11.88374 -11.63521 -11.48637 -11.34611 -11.21889 -11.12213 -10.87226 -10.77080 -10.61638 -10.19092 -10.08374 -9.90817 -9.71115 -9.34202 -9.26805 -9.12944 -7.99706 -7.81320 -7.02845 -4.58415 0.52540 0.75037 1.60273 1.86402 2.24689 2.48668 2.96311 3.04069 3.15659 3.20060 3.31402 3.51901 3.71749 3.91201 3.95512 4.25917 4.40762 4.43122 4.60263 4.73312 4.76388 4.78260 5.01505 5.25579 5.34040 5.41724 5.45675 5.58477 5.82294 5.89264 6.07651 6.15978 6.26536 6.48715 6.58503 6.61345 6.62138 6.67743 6.91571 7.14290 7.36827 7.46553 7.66136 7.68797 7.84909 7.87123 8.16728 8.24064 8.46803 8.67416 9.99236 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022930 B = 0.002175 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.795745 B =12867.656338 C =13554.289284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 H 0.115 0.885 4 O -0.323 6.323 5 C 0.516 3.484 6 O -0.516 6.516 7 C -0.097 4.097 8 C -0.187 4.187 9 C -0.090 4.090 10 C -0.209 4.209 11 C 0.078 3.922 12 C -0.443 4.443 13 H 0.094 0.906 14 C 0.084 3.916 15 N -0.803 5.803 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.288 1.288 19 H -0.243 1.243 20 C -0.132 4.132 21 C 0.512 3.488 22 O -0.435 6.435 23 N -0.639 5.639 24 C 0.540 3.460 25 N -0.504 5.504 26 C 0.179 3.821 27 C -0.265 4.265 28 C 0.179 3.821 29 N -0.550 5.550 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.287 0.713 37 H 0.118 0.882 38 H 0.424 0.576 39 H 0.173 0.827 40 H 0.149 0.851 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -3.531 26.047 26.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.132 0.868 4 O -0.240 6.240 5 C 0.363 3.637 6 O -0.406 6.406 7 C -0.098 4.098 8 C -0.206 4.206 9 C -0.108 4.108 10 C -0.229 4.229 11 C 0.075 3.925 12 C -0.471 4.471 13 H 0.112 0.888 14 C -0.136 4.136 15 N -0.426 5.426 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.215 1.215 19 H -0.166 1.166 20 C -0.152 4.152 21 C 0.295 3.705 22 O -0.299 6.299 23 N -0.291 5.291 24 C 0.185 3.815 25 N -0.224 5.224 26 C 0.011 3.989 27 C -0.289 4.289 28 C 0.012 3.988 29 N -0.271 5.271 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.263 0.737 39 H 0.190 0.810 40 H 0.167 0.833 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.331 -3.386 24.711 25.315 hybrid contribution 0.649 -0.330 0.999 1.236 sum -3.682 -3.716 25.710 26.237 Atomic orbital electron populations 1.22185 0.91537 1.04290 1.04319 1.22198 0.96071 0.97582 0.82628 0.86772 1.86762 1.77468 1.40879 1.18864 1.21958 0.73378 0.84943 0.83422 1.90757 1.49553 1.16164 1.84135 1.18697 1.06726 0.94651 0.89711 1.20693 1.08404 0.93128 0.98417 1.20606 0.98884 0.98279 0.93006 1.21294 1.09320 0.94207 0.98054 1.17639 0.91223 0.91592 0.92067 1.19464 1.16450 1.10604 1.00629 0.88783 1.26150 0.98941 0.95084 0.93402 1.69682 1.31829 1.37612 1.03519 0.86354 0.78943 0.79725 0.81601 1.19422 1.21538 1.16615 1.21265 1.04631 0.98570 0.90711 1.20544 0.80622 0.86139 0.83176 1.90875 1.33705 1.20463 1.84825 1.43135 1.55694 1.27354 1.02945 1.19413 0.89358 0.87175 0.85571 1.68525 1.12298 1.07434 1.34117 1.23287 0.91096 0.97433 0.87034 1.22801 1.05499 1.00170 1.00461 1.22987 0.89068 0.90534 0.96243 1.67789 1.25497 1.35835 0.97984 0.90353 0.89825 0.90629 0.86923 0.87816 0.87616 0.90272 0.86414 0.73748 0.81035 0.83295 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.50 37.16 0.35 -1.32 16 2 C 0.07 0.99 2.98 -27.88 -0.08 0.90 16 3 H 0.11 1.40 7.16 -51.93 -0.37 1.03 16 4 O -0.32 -5.69 8.66 -47.19 -0.41 -6.10 16 5 C 0.52 10.23 7.87 34.63 0.27 10.50 16 6 O -0.52 -10.59 15.59 -19.24 -0.30 -10.89 16 7 C -0.10 -2.11 5.87 -105.05 -0.62 -2.73 16 8 C -0.19 -3.91 9.62 -38.90 -0.37 -4.29 16 9 C -0.09 -1.89 10.01 -39.73 -0.40 -2.28 16 10 C -0.21 -4.88 7.17 -38.80 -0.28 -5.16 16 11 C 0.08 1.94 5.10 -106.87 -0.55 1.39 16 12 C -0.44 -11.73 9.57 -37.73 -0.36 -12.09 16 13 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 14 C 0.08 2.15 5.40 -17.34 -0.09 2.05 16 15 N -0.80 -20.93 13.93 55.55 0.77 -20.15 16 16 Si 0.91 20.24 24.52 -169.99 -4.17 16.07 16 17 H -0.27 -5.74 6.71 56.52 0.38 -5.36 16 18 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 20 C -0.13 -3.12 9.34 -38.43 -0.36 -3.48 16 21 C 0.51 6.98 7.14 -10.98 -0.08 6.90 16 22 O -0.43 -7.70 14.71 -14.04 -0.21 -7.90 16 23 N -0.64 -6.84 5.36 -13.07 -0.07 -6.91 16 24 C 0.54 6.40 8.38 -322.25 -2.70 3.70 16 25 N -0.50 -6.51 7.87 -13.83 -0.11 -6.62 16 26 C 0.18 1.56 11.30 -17.23 -0.19 1.36 16 27 C -0.27 -1.59 10.16 -39.30 -0.40 -1.98 16 28 C 0.18 1.19 11.30 -17.22 -0.19 1.00 16 29 N -0.55 -5.37 10.46 -13.83 -0.14 -5.52 16 30 H 0.08 0.52 7.92 -51.93 -0.41 0.11 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.11 2.18 7.59 -52.49 -0.40 1.79 16 34 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.11 2.43 4.72 -52.48 -0.25 2.18 16 36 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 37 H 0.12 2.75 7.64 -52.49 -0.40 2.35 16 38 H 0.42 3.08 8.60 -40.82 -0.35 2.73 16 39 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -33.23 360.99 -9.55 -42.78 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.31 Total: 5.33 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -6.05 Total: -5.54 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.45 Total: -39.19 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.91 Total: -24.89 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.17 Total: 16.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.23 -9.55 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525597.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.839 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds