Wall clock time and date at job start Tue Mar 31 2020 23:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47134 * 2 1 4 4 O 1.45195 * 109.47428 * 120.00466 * 2 1 3 5 5 C 1.34702 * 117.00088 * 270.00085 * 4 2 1 6 6 O 1.21461 * 119.99958 * 359.97438 * 5 4 2 7 7 C 1.47769 * 119.99980 * 179.97438 * 5 4 2 8 8 C 1.39968 * 120.03194 * 359.72755 * 7 5 4 9 9 C 1.38318 * 120.35107 * 179.76231 * 8 7 5 10 10 C 1.37756 * 120.41894 * 0.51182 * 9 8 7 11 11 C 1.40747 * 120.05154 * 359.74296 * 10 9 8 12 12 C 1.41445 * 120.17908 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99688 * 24.43872 * 12 11 10 14 14 C 1.39932 * 120.00422 * 204.44276 * 12 11 10 15 15 N 1.30834 * 119.99950 * 17.87410 * 14 12 11 16 16 Si 1.86794 * 120.00033 * 197.88173 * 14 12 11 17 17 H 1.48499 * 109.47544 * 59.99759 * 16 14 12 18 18 H 1.48501 * 109.47189 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47172 * 299.99383 * 16 14 12 20 20 C 1.39055 * 120.02929 * 179.97438 * 7 5 4 21 21 C 1.50700 * 109.46922 * 240.00440 * 2 1 3 22 22 O 1.21267 * 120.00059 * 245.00000 * 21 2 1 23 23 N 1.34783 * 120.00098 * 65.00076 * 21 2 1 24 24 C 1.38934 * 120.00003 * 179.97438 * 23 21 2 25 25 N 1.32404 * 119.20753 * 359.73102 * 24 23 21 26 26 C 1.32271 * 120.75206 * 179.76213 * 25 24 23 27 27 C 1.38609 * 119.18698 * 0.50031 * 26 25 24 28 28 C 1.38612 * 118.53448 * 359.75320 * 27 26 25 29 29 N 1.32272 * 119.18663 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47611 * 59.99676 * 1 2 3 31 31 H 1.09004 * 109.47171 * 299.99892 * 1 2 3 32 32 H 1.09001 * 109.47729 * 179.97438 * 1 2 3 33 33 H 1.08001 * 119.82379 * 359.97438 * 8 7 5 34 34 H 1.07997 * 119.78548 * 180.25154 * 9 8 7 35 35 H 1.08002 * 119.97556 * 179.76254 * 10 9 8 36 36 H 0.96999 * 119.99664 * 179.97438 * 15 14 12 37 37 H 1.07998 * 120.20370 * 359.95848 * 20 7 5 38 38 H 0.97004 * 119.99853 * 359.97438 * 23 21 2 39 39 H 1.08001 * 120.40778 * 180.23155 * 26 25 24 40 40 H 1.08000 * 120.73411 * 179.77433 * 27 26 25 41 41 H 1.08000 * 120.40694 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 1.1854 5 6 2.2179 0.0665 2.2849 6 8 1.9978 1.2606 2.2541 7 6 2.7093 -0.5624 3.5285 8 6 2.9577 -1.9393 3.5665 9 6 3.4225 -2.5340 4.7256 10 6 3.6362 -1.7805 5.8588 11 6 3.3871 -0.3954 5.8416 12 6 3.6061 0.3810 7.0034 13 1 4.3057 0.0440 7.7541 14 6 2.9164 1.5856 7.1804 15 7 1.8381 1.8309 6.4812 16 14 3.5354 2.8436 8.4147 17 1 4.9089 3.2680 8.0427 18 1 2.6350 4.0246 8.4117 19 1 3.5544 2.2387 9.7708 20 6 2.9205 0.2124 4.6638 21 6 2.0322 -0.7103 -1.2305 22 8 2.6528 -1.7465 -1.1217 23 7 1.7918 -0.1940 -2.4521 24 6 2.2553 -0.8486 -3.5865 25 7 2.9362 -1.9758 -3.4491 26 6 3.3877 -2.6266 -4.5085 27 6 3.1491 -2.1092 -5.7720 28 6 2.4374 -0.9245 -5.8789 29 7 2.0097 -0.3275 -4.7788 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.7889 -2.5400 2.6850 34 1 3.6150 -3.5965 4.7434 35 1 3.9956 -2.2529 6.7611 36 1 1.3598 2.6657 6.6042 37 1 2.7270 1.2747 4.6403 38 1 1.2951 0.6347 -2.5392 39 1 3.9393 -3.5476 -4.3901 40 1 3.5094 -2.6180 -6.6539 41 1 2.2339 -0.4947 -6.8485 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051525601.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:00 Heat of formation + Delta-G solvation = -28.827652 kcal Electronic energy + Delta-G solvation = -27934.222292 eV Core-core repulsion = 23780.226792 eV Total energy + Delta-G solvation = -4153.995500 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60898 -40.34324 -39.26055 -37.40214 -35.92664 -35.29431 -34.00530 -33.77530 -32.42213 -30.87006 -30.12524 -29.50496 -25.69555 -25.37997 -24.99664 -24.14488 -22.80338 -21.04084 -20.77851 -19.86897 -18.98242 -18.14111 -17.64957 -16.78466 -16.60495 -16.20806 -16.05305 -15.76633 -15.42155 -15.14280 -14.82869 -14.66170 -14.44647 -14.02134 -13.77718 -13.60099 -13.18838 -13.04028 -12.73890 -12.56583 -12.33706 -11.79566 -11.63341 -11.40874 -11.27970 -11.19915 -11.16158 -11.12763 -10.77844 -10.62774 -10.52311 -10.27301 -9.98637 -9.73848 -9.55899 -9.27057 -9.24583 -9.06354 -7.76676 -7.56399 -6.84300 -4.44697 0.58344 0.80524 1.88394 1.99220 2.33924 2.77984 3.05403 3.06995 3.13798 3.14037 3.52544 3.57941 3.78452 3.89104 4.04885 4.31005 4.51352 4.55742 4.74373 4.79827 4.82974 4.88761 5.18570 5.39383 5.52883 5.55819 5.64971 5.65713 5.96161 6.12568 6.14849 6.43875 6.52668 6.64226 6.73863 6.83433 6.92233 6.95657 7.15597 7.29610 7.66953 7.73456 7.75627 7.89388 7.94155 8.08644 8.41660 8.44219 8.75462 8.77574 10.11190 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022613 B = 0.002206 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.954576 B =12691.850934 C =13375.008117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.075 3.925 3 H 0.113 0.887 4 O -0.326 6.326 5 C 0.515 3.485 6 O -0.515 6.515 7 C -0.115 4.115 8 C -0.189 4.189 9 C -0.104 4.104 10 C -0.199 4.199 11 C 0.094 3.906 12 C -0.460 4.460 13 H 0.082 0.918 14 C 0.073 3.927 15 N -0.788 5.788 16 Si 0.912 3.088 17 H -0.263 1.263 18 H -0.278 1.278 19 H -0.265 1.265 20 C -0.088 4.088 21 C 0.512 3.488 22 O -0.435 6.435 23 N -0.639 5.639 24 C 0.541 3.459 25 N -0.504 5.504 26 C 0.179 3.821 27 C -0.267 4.267 28 C 0.178 3.822 29 N -0.551 5.551 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.285 0.715 37 H 0.136 0.864 38 H 0.424 0.576 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 -2.842 -21.367 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.015 3.985 3 H 0.131 0.869 4 O -0.242 6.242 5 C 0.362 3.638 6 O -0.405 6.405 7 C -0.116 4.116 8 C -0.209 4.209 9 C -0.122 4.122 10 C -0.219 4.219 11 C 0.092 3.908 12 C -0.489 4.489 13 H 0.100 0.900 14 C -0.146 4.146 15 N -0.413 5.413 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.107 4.107 21 C 0.296 3.704 22 O -0.299 6.299 23 N -0.292 5.292 24 C 0.186 3.814 25 N -0.224 5.224 26 C 0.011 3.989 27 C -0.290 4.290 28 C 0.011 3.989 29 N -0.272 5.272 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.262 0.738 39 H 0.189 0.811 40 H 0.167 0.833 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.960 -2.585 -20.338 20.595 hybrid contribution 0.133 0.730 -0.484 0.886 sum -1.826 -1.855 -20.822 20.984 Atomic orbital electron populations 1.22179 0.91668 1.04196 1.04264 1.22154 0.96006 0.97561 0.82764 0.86906 1.86769 1.77640 1.40990 1.18829 1.22038 0.73417 0.85013 0.83301 1.90753 1.49520 1.16222 1.83990 1.18770 1.08341 0.94664 0.89860 1.20640 1.08594 0.93239 0.98407 1.20528 1.00378 0.97912 0.93422 1.21205 1.09465 0.93864 0.97318 1.17531 0.89970 0.91005 0.92308 1.19529 1.21715 1.03390 1.04275 0.89965 1.25959 0.93336 0.98703 0.96556 1.69772 1.11874 1.24258 1.35346 0.86306 0.79927 0.79439 0.80752 1.18717 1.20245 1.18924 1.21651 0.99339 1.00163 0.89586 1.20597 0.80549 0.86127 0.83166 1.90868 1.33722 1.20490 1.84828 1.43170 1.55659 1.27365 1.02961 1.19430 0.89222 0.87208 0.85584 1.68531 1.12220 1.07526 1.34084 1.23285 0.91183 0.97357 0.87035 1.22789 1.05580 1.00225 1.00448 1.22979 0.89083 0.90561 0.96239 1.67797 1.25653 1.35704 0.97998 0.90500 0.89775 0.90714 0.87552 0.88420 0.88286 0.90391 0.84619 0.73757 0.81060 0.83335 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.50 37.16 0.35 -1.59 16 2 C 0.07 1.11 2.98 -27.89 -0.08 1.02 16 3 H 0.11 1.58 7.16 -51.93 -0.37 1.21 16 4 O -0.33 -6.35 8.66 -47.16 -0.41 -6.75 16 5 C 0.51 11.46 7.87 34.63 0.27 11.74 16 6 O -0.52 -11.97 15.59 -19.24 -0.30 -12.27 16 7 C -0.12 -2.79 5.87 -105.05 -0.62 -3.41 16 8 C -0.19 -4.30 9.62 -38.90 -0.37 -4.67 16 9 C -0.10 -2.30 10.01 -39.73 -0.40 -2.69 16 10 C -0.20 -4.72 9.78 -38.81 -0.38 -5.10 16 11 C 0.09 2.47 5.57 -106.87 -0.60 1.88 16 12 C -0.46 -11.91 9.05 -37.73 -0.34 -12.25 16 13 H 0.08 2.01 7.91 -52.48 -0.41 1.60 16 14 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 15 N -0.79 -20.40 10.96 55.55 0.61 -19.79 16 16 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 17 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 C -0.09 -2.32 8.24 -38.42 -0.32 -2.64 16 21 C 0.51 7.58 7.14 -10.98 -0.08 7.50 16 22 O -0.44 -8.17 14.71 -14.04 -0.21 -8.37 16 23 N -0.64 -7.47 5.36 -13.07 -0.07 -7.54 16 24 C 0.54 6.82 8.38 -322.25 -2.70 4.12 16 25 N -0.50 -6.86 7.87 -13.83 -0.11 -6.97 16 26 C 0.18 1.66 11.30 -17.23 -0.19 1.46 16 27 C -0.27 -1.73 10.16 -39.31 -0.40 -2.13 16 28 C 0.18 1.29 11.30 -17.22 -0.19 1.09 16 29 N -0.55 -5.74 10.46 -13.83 -0.14 -5.89 16 30 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.11 2.26 7.59 -52.49 -0.40 1.86 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 37 H 0.14 3.79 5.74 -52.49 -0.30 3.49 16 38 H 0.42 3.51 8.60 -40.82 -0.35 3.16 16 39 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -33.67 366.23 -10.62 -44.29 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.34 Total: 8.25 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -6.14 Total: -3.94 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.29 Total: -40.18 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.91 Total: -27.40 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.67 -10.62 -44.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051525601.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.462 kcal (2) G-P(sol) polarization free energy of solvation -33.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds