Wall clock time and date at job start Tue Mar 31 2020 23:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46942 * 2 1 4 4 C 1.46497 * 120.00129 * 269.99599 * 3 2 1 5 5 C 1.50709 * 109.47273 * 270.00327 * 4 3 2 6 6 H 1.07999 * 119.99476 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00210 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47015 * 120.00082 * 9 7 5 12 12 H 1.48507 * 109.47126 * 239.99903 * 9 7 5 13 13 C 1.34777 * 120.00345 * 90.00092 * 3 2 1 14 14 O 1.21283 * 120.00463 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99675 * 359.72090 * 13 3 2 16 16 N 1.46499 * 109.47257 * 180.27849 * 15 13 3 17 17 C 1.33820 * 124.18788 * 90.02135 * 16 15 13 18 18 O 1.21541 * 123.77219 * 359.97438 * 17 16 15 19 19 N 1.34579 * 112.44794 * 180.02562 * 17 16 15 20 20 C 1.47138 * 106.54372 * 0.02562 * 19 17 16 21 21 C 1.52179 * 110.52504 * 241.53300 * 20 19 17 22 22 C 1.54316 * 112.50844 * 237.10620 * 21 20 19 23 23 S 1.83958 * 102.58990 * 24.49568 * 22 21 20 24 24 C 1.54106 * 109.46117 * 116.74991 * 20 19 17 25 25 C 1.34820 * 124.18535 * 269.72894 * 16 15 13 26 26 O 1.21238 * 127.19383 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.46999 * 300.00039 * 1 2 3 28 28 H 1.08997 * 109.46656 * 60.00331 * 1 2 3 29 29 H 1.09002 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47592 * 239.99526 * 2 1 3 31 31 H 1.09002 * 109.47093 * 119.99833 * 2 1 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 4 3 2 33 33 H 1.09001 * 109.47460 * 150.00590 * 4 3 2 34 34 H 0.97000 * 120.00447 * 179.97438 * 8 7 5 35 35 H 1.09009 * 109.47352 * 300.27556 * 15 13 3 36 36 H 1.08998 * 109.47585 * 60.27844 * 15 13 3 37 37 H 0.97002 * 126.72416 * 179.97438 * 19 17 16 38 38 H 1.09002 * 108.88018 * 357.90268 * 21 20 19 39 39 H 1.08997 * 108.88329 * 116.30745 * 21 20 19 40 40 H 1.08997 * 110.78556 * 142.77441 * 22 21 20 41 41 H 1.08999 * 110.78415 * 266.03003 * 22 21 20 42 42 H 1.09001 * 110.79486 * 217.26976 * 24 20 19 43 43 H 1.09004 * 110.79513 * 340.74684 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1493 2.3895 -2.8779 8 7 3.3493 3.1257 -3.6180 9 14 5.9137 2.0966 -3.4167 10 1 6.6016 1.2425 -2.4156 11 1 5.9217 1.4170 -4.7371 12 1 6.6206 3.3981 -3.5255 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1599 1.1672 15 6 1.9859 1.3083 2.4723 16 7 2.2981 2.2077 3.5858 17 6 1.4146 3.0379 4.1522 18 8 0.2552 3.1335 3.8001 19 7 1.9537 3.7560 5.1546 20 6 3.3627 3.3441 5.2543 21 6 3.6446 2.7326 6.6191 22 6 4.7780 3.4619 7.3705 23 16 4.7432 5.1401 6.6179 24 6 4.2729 4.5475 4.9407 25 6 3.5096 2.2972 4.1704 26 8 4.5088 1.6724 3.8855 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 3.6753 3.5162 -4.4439 35 1 0.9376 1.0142 2.5258 36 1 2.6158 0.4209 2.5344 37 1 1.5021 4.4163 5.7032 38 1 2.7364 2.7780 7.2203 39 1 3.9246 1.6876 6.4864 40 1 4.5644 3.5122 8.4382 41 1 5.7365 2.9746 7.1920 42 1 5.1532 4.2314 4.3810 43 1 3.7237 5.3171 4.3982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053240420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:13 Heat of formation + Delta-G solvation = -62.016371 kcal Electronic energy + Delta-G solvation = -28696.023680 eV Core-core repulsion = 24676.032961 eV Total energy + Delta-G solvation = -4019.990719 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.82225 -39.17182 -38.78540 -37.11407 -35.68502 -35.21155 -33.21157 -32.76693 -30.17704 -29.75758 -29.21296 -26.80223 -25.90737 -23.60221 -23.15613 -23.00785 -21.57809 -20.62130 -18.77091 -18.08479 -17.51614 -17.15904 -16.52218 -16.37567 -16.25005 -16.02661 -15.62622 -15.05607 -14.90453 -14.72537 -14.60928 -14.29136 -14.05500 -13.74796 -13.48256 -13.21835 -12.90671 -12.79419 -12.68279 -12.39415 -12.09514 -12.04622 -11.95403 -11.63626 -11.24513 -10.96943 -10.91654 -10.77990 -10.68545 -10.57254 -10.31421 -10.17509 -10.15033 -9.84397 -9.64505 -8.93782 -8.45413 -8.13794 -7.76078 -6.06124 -4.10960 1.30111 1.36547 1.86176 1.95616 2.81481 2.89991 3.21409 3.29107 3.37058 3.41800 3.51383 3.75164 3.86065 4.07641 4.38947 4.43509 4.47809 4.79324 4.87012 4.90702 5.09232 5.10552 5.17164 5.23462 5.28479 5.31291 5.35268 5.38325 5.49482 5.58834 5.73510 5.99069 6.19278 6.46277 6.56172 6.86994 6.97929 7.17633 7.39842 7.47057 7.89668 7.96835 8.20214 8.28983 8.81816 8.97663 9.54187 11.02040 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012813 B = 0.003561 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.677216 B = 7861.854234 C = 9139.716374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.495 3.505 14 O -0.532 6.532 15 C 0.096 3.904 16 N -0.556 5.556 17 C 0.710 3.290 18 O -0.532 6.532 19 N -0.716 5.716 20 C 0.125 3.875 21 C -0.123 4.123 22 C -0.067 4.067 23 S -0.269 6.269 24 C -0.067 4.067 25 C 0.539 3.461 26 O -0.451 6.451 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.442 0.558 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 -4.533 22.520 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.322 5.322 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.279 3.721 14 O -0.409 6.409 15 C -0.029 4.029 16 N -0.301 5.301 17 C 0.411 3.589 18 O -0.405 6.405 19 N -0.381 5.381 20 C 0.032 3.968 21 C -0.163 4.163 22 C -0.215 4.215 23 S -0.042 6.042 24 C -0.216 4.216 25 C 0.323 3.677 26 O -0.319 6.319 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.288 0.712 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.203 -3.053 22.343 22.658 hybrid contribution 0.568 -0.946 -0.813 1.371 sum -1.634 -3.999 21.530 21.959 Atomic orbital electron populations 1.22243 0.96426 1.01638 1.02660 1.21501 0.93781 0.83918 1.02950 1.48223 1.63237 1.13344 1.07431 1.19315 0.96437 0.93644 0.77753 1.21463 0.96827 1.32004 1.06270 0.92347 1.24931 0.97885 0.94879 0.96373 1.69943 1.35613 1.33405 1.14329 0.86447 0.84603 0.78099 0.78328 1.19743 1.20915 1.20874 1.20283 0.79356 0.87332 0.85146 1.90687 1.45609 1.17724 1.86846 1.21728 1.04904 0.92158 0.84098 1.45850 1.12279 1.39333 1.32624 1.15772 0.84545 0.78851 0.79706 1.91023 1.14829 1.68651 1.65977 1.45658 1.09919 1.44846 1.37709 1.21850 0.84670 0.94132 0.96195 1.22185 1.00691 1.01281 0.92098 1.24186 1.01511 0.93052 1.02758 1.88167 1.92632 1.13936 1.09435 1.24515 1.02085 0.97878 0.97105 1.20465 0.82780 0.82332 0.82156 1.90836 1.30496 1.45744 1.64848 0.92892 0.91810 0.91918 0.89439 0.91815 0.94717 0.93879 0.92748 0.86040 0.86241 0.71216 0.88130 0.88710 0.86735 0.88184 0.86712 0.85566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.34 2.46 -175.06 -0.43 -12.77 16 4 C 0.25 6.45 5.16 -5.19 -0.03 6.42 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.49 10.34 7.74 -10.98 -0.09 10.26 16 14 O -0.53 -13.47 16.01 5.55 0.09 -13.38 16 15 C 0.10 1.46 4.74 -5.19 -0.02 1.43 16 16 N -0.56 -8.25 2.09 -122.05 -0.26 -8.51 16 17 C 0.71 10.27 8.63 -87.95 -0.76 9.51 16 18 O -0.53 -9.33 17.48 5.33 0.09 -9.24 16 19 N -0.72 -7.35 5.59 -52.95 -0.30 -7.65 16 20 C 0.13 1.27 1.19 -132.11 -0.16 1.11 16 21 C -0.12 -0.83 5.85 -26.46 -0.15 -0.98 16 22 C -0.07 -0.41 7.46 37.85 0.28 -0.13 16 23 S -0.27 -2.46 23.27 -107.50 -2.50 -4.97 16 24 C -0.07 -0.71 6.63 37.74 0.25 -0.46 16 25 C 0.54 7.48 6.45 -10.62 -0.07 7.41 16 26 O -0.45 -7.29 17.74 5.59 0.10 -7.19 16 27 H 0.05 0.67 7.20 -51.93 -0.37 0.30 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.78 6.45 -51.93 -0.33 0.44 16 32 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.12 1.58 6.88 -51.92 -0.36 1.23 16 36 H 0.12 1.54 7.27 -51.93 -0.38 1.16 16 37 H 0.44 3.46 8.96 -40.82 -0.37 3.09 16 38 H 0.10 0.51 7.86 -51.93 -0.41 0.11 16 39 H 0.09 0.62 7.58 -51.93 -0.39 0.23 16 40 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.11 1.35 7.90 -51.93 -0.41 0.94 16 43 H 0.13 1.41 8.01 -51.93 -0.42 1.00 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -36.79 374.00 -8.55 -45.34 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.90 Total: 0.97 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: -0.81 Total: 20.67 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.25 Total: -54.82 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: 0.28 Total: -29.81 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -2.46 SS G_CDS: -2.50 Total: -4.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.79 -8.55 -45.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053240420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.678 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds