Wall clock time and date at job start Tue Mar 31 2020 23:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81405 * 109.46880 * 2 1 4 4 O 1.42095 * 110.54313 * 68.37529 * 3 2 1 5 5 O 1.42104 * 110.54226 * 291.62317 * 3 2 1 6 6 N 1.65598 * 104.44697 * 180.02562 * 3 2 1 7 7 C 1.46499 * 120.00150 * 64.99922 * 6 3 2 8 8 C 1.53002 * 109.46861 * 165.00050 * 7 6 3 9 9 N 1.46499 * 109.46861 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21572 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39236 * 119.99636 * 184.29090 * 12 10 9 14 14 C 1.39481 * 119.83681 * 324.69610 * 13 12 10 15 15 C 1.36376 * 120.17073 * 180.29622 * 14 13 12 16 16 C 1.40868 * 119.82553 * 359.49187 * 15 14 13 17 17 C 1.41155 * 120.15840 * 180.25124 * 16 15 14 18 18 H 1.08007 * 119.99826 * 215.00602 * 17 16 15 19 19 C 1.39895 * 120.00481 * 35.01331 * 17 16 15 20 20 N 1.30876 * 119.99949 * 355.53526 * 19 17 16 21 21 Si 1.86794 * 120.00004 * 175.54513 * 19 17 16 22 22 H 1.48500 * 109.47375 * 59.99379 * 21 19 17 23 23 H 1.48503 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47219 * 299.99325 * 21 19 17 25 25 C 1.40870 * 119.67277 * 0.50490 * 16 15 14 26 26 C 1.36365 * 119.82848 * 359.74277 * 25 16 15 27 27 H 1.08993 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47121 * 300.00074 * 1 2 3 29 29 H 1.09000 * 109.46988 * 60.00248 * 1 2 3 30 30 H 1.08996 * 109.47121 * 239.99926 * 2 1 3 31 31 H 1.09000 * 109.46988 * 119.99752 * 2 1 3 32 32 H 0.97006 * 119.99740 * 244.99949 * 6 3 2 33 33 H 1.08996 * 109.47348 * 44.99946 * 7 6 3 34 34 H 1.09000 * 109.47122 * 284.99445 * 7 6 3 35 35 H 1.08995 * 109.47617 * 60.00189 * 8 7 6 36 36 H 1.09003 * 109.47473 * 299.99622 * 8 7 6 37 37 H 0.96998 * 119.99997 * 0.02562 * 9 8 7 38 38 H 0.96999 * 119.99776 * 4.28566 * 12 10 9 39 39 H 1.07999 * 119.91387 * 0.03109 * 14 13 12 40 40 H 1.08004 * 120.08495 * 179.69989 * 15 14 13 41 41 H 0.96992 * 120.00204 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.08147 * 179.71369 * 25 16 15 43 43 H 1.08001 * 119.91706 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.4666 0.9673 -1.1509 8 6 5.9617 1.2838 -1.0781 9 7 6.6441 0.6852 -2.2280 10 6 7.9756 0.8350 -2.3744 11 8 8.6102 1.4672 -1.5525 12 7 8.6033 0.2847 -3.4326 13 6 9.9895 0.3627 -3.5375 14 6 10.6565 1.5017 -3.0868 15 6 12.0135 1.5879 -3.1918 16 6 12.7426 0.5182 -3.7473 17 6 14.1478 0.5977 -3.8544 18 1 14.6513 0.1494 -4.6983 19 6 14.8885 1.2570 -2.8676 20 7 14.2737 1.8750 -1.8914 21 14 16.7549 1.2554 -2.9433 22 1 17.1995 1.8904 -4.2100 23 1 17.2978 2.0181 -1.7906 24 1 17.2513 -0.1432 -2.8900 25 6 12.0618 -0.6289 -4.2002 26 6 10.7042 -0.6984 -4.0933 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.2988 1.8765 0.7605 33 1 4.0529 1.3772 -2.0723 34 1 4.3229 -0.1131 -1.1371 35 1 6.3755 0.8739 -0.1568 36 1 6.1056 2.3642 -1.0918 37 1 6.1376 0.1817 -2.8843 38 1 8.0893 -0.1657 -4.1209 39 1 10.0965 2.3194 -2.6576 40 1 12.5281 2.4726 -2.8468 41 1 14.7872 2.3324 -1.2074 42 1 12.6138 -1.4510 -4.6314 43 1 10.1808 -1.5770 -4.4404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061106919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:18 Heat of formation + Delta-G solvation = -77.914880 kcal Electronic energy + Delta-G solvation = -26049.975979 eV Core-core repulsion = 22029.295848 eV Total energy + Delta-G solvation = -4020.680130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96849 -37.70817 -37.49986 -36.56752 -36.34864 -34.43632 -33.95288 -33.71788 -32.80760 -29.53234 -29.26105 -28.06953 -24.87548 -24.63502 -23.13011 -21.53472 -21.07379 -20.10684 -19.74583 -18.28602 -18.09051 -17.25702 -16.98523 -16.69720 -16.52190 -15.91385 -15.54088 -15.17761 -14.79781 -14.66786 -14.47445 -14.05501 -13.87471 -13.78588 -13.13448 -13.05341 -12.74945 -12.66349 -12.55655 -12.45884 -12.34303 -12.14701 -12.08522 -11.91098 -11.70545 -11.42095 -11.14640 -11.11701 -10.93570 -10.47853 -10.02760 -9.99724 -9.87345 -9.60639 -9.12611 -8.97116 -8.74518 -7.48970 -6.84484 -6.55845 -4.29837 -0.24577 2.14100 2.70583 3.01653 3.08177 3.12266 3.13871 3.19758 3.30530 3.67605 3.68187 4.01182 4.01524 4.21160 4.27478 4.58564 4.61174 4.65418 4.76099 4.88125 4.98160 5.08338 5.11748 5.35532 5.57005 5.67119 5.71928 6.14657 6.36534 6.42451 6.49241 6.78845 6.84018 7.07518 7.17441 7.30507 7.39043 7.68033 7.83943 8.04036 8.12572 8.32550 8.45654 8.70921 8.94642 8.96955 9.09806 10.35262 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031992 B = 0.001671 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.007967 B =16748.978805 C =17288.392278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.632 4.632 3 S 2.615 3.385 4 O -0.955 6.955 5 O -0.953 6.953 6 N -1.117 6.117 7 C 0.103 3.897 8 C 0.135 3.865 9 N -0.753 5.753 10 C 0.695 3.305 11 O -0.571 6.571 12 N -0.667 5.667 13 C 0.022 3.978 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.099 3.901 17 C -0.465 4.465 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.809 5.809 21 Si 0.915 3.085 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.204 4.204 26 C -0.116 4.116 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.422 0.578 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.393 0.607 38 H 0.391 0.609 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.278 0.722 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.349 -5.402 2.419 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.762 4.762 3 S 2.706 3.294 4 O -0.945 6.945 5 O -0.942 6.942 6 N -0.877 5.877 7 C -0.024 4.024 8 C 0.008 3.992 9 N -0.411 5.411 10 C 0.395 3.605 11 O -0.447 6.447 12 N -0.313 5.313 13 C -0.070 4.070 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.096 3.904 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.436 5.436 21 Si 0.740 3.260 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.224 4.224 26 C -0.136 4.136 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.257 0.743 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.227 0.773 38 H 0.224 0.776 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.291 -3.927 3.267 24.822 hybrid contribution 0.734 -1.289 -0.162 1.492 sum -23.558 -5.216 3.104 24.327 Atomic orbital electron populations 1.21515 0.90348 1.05222 1.03608 1.30503 1.07432 1.26409 1.11817 1.04960 0.72876 0.77189 0.74382 1.93625 1.82894 1.72910 1.45095 1.93620 1.83167 1.71896 1.45566 1.55460 1.26127 1.78184 1.27943 1.21443 0.93885 0.97960 0.89084 1.21157 0.88910 0.99572 0.89513 1.44899 1.07083 1.60486 1.28681 1.15967 0.81030 0.81006 0.82447 1.90952 1.64490 1.44842 1.44413 1.42075 1.06775 1.59636 1.22776 1.17078 0.79585 0.97302 1.13059 1.20676 0.95124 0.95875 0.99711 1.21305 0.91606 0.99965 1.03426 1.17721 0.93380 0.89744 0.89554 1.19432 0.91715 1.31220 1.07176 0.90732 1.25882 1.01037 0.93041 0.94668 1.69781 1.37579 1.25893 1.10302 0.86263 0.82093 0.79135 0.78479 1.19098 1.20466 1.19187 1.20666 0.92856 0.98534 1.10302 1.20041 0.94419 0.95431 1.03724 0.89899 0.90858 0.90819 0.84992 0.84766 0.74283 0.89376 0.91106 0.90826 0.90638 0.77332 0.77579 0.87329 0.85239 0.91056 0.88576 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.92 37.16 0.37 -0.19 16 2 C -0.63 -2.23 6.79 37.16 0.25 -1.98 16 3 S 2.61 18.07 5.46 -107.50 -0.59 17.48 16 4 O -0.96 -9.90 18.08 -57.54 -1.04 -10.94 16 5 O -0.95 -9.93 17.49 -57.54 -1.01 -10.94 16 6 N -1.12 -6.68 5.88 -10.61 -0.06 -6.74 16 7 C 0.10 0.61 6.25 -4.04 -0.03 0.58 16 8 C 0.13 1.28 5.82 -4.04 -0.02 1.26 16 9 N -0.75 -8.28 5.56 -65.23 -0.36 -8.65 16 10 C 0.70 11.88 8.40 -86.91 -0.73 11.15 16 11 O -0.57 -12.63 13.76 5.30 0.07 -12.56 16 12 N -0.67 -11.25 5.31 -14.10 -0.07 -11.32 16 13 C 0.02 0.49 6.31 -83.57 -0.53 -0.04 16 14 C -0.09 -2.34 8.61 -39.79 -0.34 -2.68 16 15 C -0.14 -3.85 8.61 -39.26 -0.34 -4.19 16 16 C 0.10 2.65 5.55 -106.80 -0.59 2.05 16 17 C -0.46 -12.44 9.02 -37.86 -0.34 -12.78 16 18 H 0.07 1.89 7.85 -52.48 -0.41 1.48 16 19 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 20 N -0.81 -21.74 10.61 55.54 0.59 -21.15 16 21 Si 0.92 19.23 29.56 -169.99 -5.03 14.20 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.20 -4.89 9.74 -39.26 -0.38 -5.27 16 26 C -0.12 -2.49 9.90 -39.79 -0.39 -2.88 16 27 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 32 H 0.42 2.25 8.62 -34.47 -0.30 1.96 16 33 H 0.09 0.50 7.69 -51.93 -0.40 0.11 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 2.82 8.49 -40.82 -0.35 2.48 16 38 H 0.39 4.89 8.83 -40.82 -0.36 4.53 16 39 H 0.11 2.75 6.22 -52.49 -0.33 2.42 16 40 H 0.13 3.66 6.15 -52.48 -0.32 3.34 16 41 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 42 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -37.53 376.76 -10.81 -48.34 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.83 Total: 9.88 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -3.17 Total: -13.28 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.09 Total: -47.86 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.97 Total: -34.44 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: 18.07 SS G_CDS: -0.59 Total: 17.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.53 -10.81 -48.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061106919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.575 kcal (2) G-P(sol) polarization free energy of solvation -37.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds