Wall clock time and date at job start Tue Mar 31 2020 23:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81405 * 109.46880 * 2 1 4 4 O 1.42095 * 110.54313 * 68.37529 * 3 2 1 5 5 O 1.42104 * 110.54226 * 291.62317 * 3 2 1 6 6 N 1.65598 * 104.44697 * 180.02562 * 3 2 1 7 7 C 1.46499 * 120.00150 * 64.99922 * 6 3 2 8 8 C 1.53002 * 109.46861 * 165.00050 * 7 6 3 9 9 N 1.46499 * 109.46861 * 179.97438 * 8 7 6 10 10 C 1.34781 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21572 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39236 * 119.99636 * 184.29090 * 12 10 9 14 14 C 1.39481 * 119.83681 * 324.69610 * 13 12 10 15 15 C 1.36376 * 120.17073 * 180.29622 * 14 13 12 16 16 C 1.40868 * 119.82553 * 359.49187 * 15 14 13 17 17 C 1.41155 * 120.15840 * 180.25124 * 16 15 14 18 18 H 1.08007 * 119.99826 * 215.00602 * 17 16 15 19 19 C 1.39895 * 120.00481 * 35.01331 * 17 16 15 20 20 N 1.30876 * 119.99949 * 355.53526 * 19 17 16 21 21 Si 1.86794 * 120.00004 * 175.54513 * 19 17 16 22 22 H 1.48500 * 109.47375 * 59.99379 * 21 19 17 23 23 H 1.48503 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47219 * 299.99325 * 21 19 17 25 25 C 1.40870 * 119.67277 * 0.50490 * 16 15 14 26 26 C 1.36365 * 119.82848 * 359.74277 * 25 16 15 27 27 H 1.08993 * 109.46811 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47121 * 300.00074 * 1 2 3 29 29 H 1.09000 * 109.46988 * 60.00248 * 1 2 3 30 30 H 1.08996 * 109.47121 * 239.99926 * 2 1 3 31 31 H 1.09000 * 109.46988 * 119.99752 * 2 1 3 32 32 H 0.97006 * 119.99740 * 244.99949 * 6 3 2 33 33 H 1.08996 * 109.47348 * 44.99946 * 7 6 3 34 34 H 1.09000 * 109.47122 * 284.99445 * 7 6 3 35 35 H 1.08995 * 109.47617 * 60.00189 * 8 7 6 36 36 H 1.09003 * 109.47473 * 299.99622 * 8 7 6 37 37 H 0.96998 * 119.99997 * 0.02562 * 9 8 7 38 38 H 0.96999 * 119.99776 * 4.28566 * 12 10 9 39 39 H 1.07999 * 119.91387 * 0.03109 * 14 13 12 40 40 H 1.08004 * 120.08495 * 179.69989 * 15 14 13 41 41 H 0.96992 * 120.00204 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.08147 * 179.71369 * 25 16 15 43 43 H 1.08001 * 119.91706 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3439 -1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.4666 0.9673 -1.1509 8 6 5.9617 1.2838 -1.0781 9 7 6.6441 0.6852 -2.2280 10 6 7.9756 0.8350 -2.3744 11 8 8.6102 1.4672 -1.5525 12 7 8.6033 0.2847 -3.4326 13 6 9.9895 0.3627 -3.5375 14 6 10.6565 1.5017 -3.0868 15 6 12.0135 1.5879 -3.1918 16 6 12.7426 0.5182 -3.7473 17 6 14.1478 0.5977 -3.8544 18 1 14.6513 0.1494 -4.6983 19 6 14.8885 1.2570 -2.8676 20 7 14.2737 1.8750 -1.8914 21 14 16.7549 1.2554 -2.9433 22 1 17.1995 1.8904 -4.2100 23 1 17.2978 2.0181 -1.7906 24 1 17.2513 -0.1432 -2.8900 25 6 12.0618 -0.6289 -4.2002 26 6 10.7042 -0.6984 -4.0933 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 4.2988 1.8765 0.7605 33 1 4.0529 1.3772 -2.0723 34 1 4.3229 -0.1131 -1.1371 35 1 6.3755 0.8739 -0.1568 36 1 6.1056 2.3642 -1.0918 37 1 6.1376 0.1817 -2.8843 38 1 8.0893 -0.1657 -4.1209 39 1 10.0965 2.3194 -2.6576 40 1 12.5281 2.4726 -2.8468 41 1 14.7872 2.3324 -1.2074 42 1 12.6138 -1.4510 -4.6314 43 1 10.1808 -1.5770 -4.4404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061106919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:18 Heat of formation + Delta-G solvation = -108.943327 kcal Electronic energy + Delta-G solvation = -26051.321473 eV Core-core repulsion = 22029.295848 eV Total energy + Delta-G solvation = -4022.025625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.39388 -39.28704 -38.23531 -37.42164 -37.03155 -36.10262 -35.05855 -34.47292 -34.00390 -31.39105 -30.89610 -29.15901 -26.61697 -24.94115 -24.00864 -23.16230 -22.74985 -21.64009 -20.31625 -19.44887 -19.18221 -18.84682 -18.11694 -17.43157 -17.30120 -17.03467 -16.74991 -16.23071 -15.80473 -15.71773 -15.60839 -15.31452 -15.07319 -14.77396 -14.46053 -14.11687 -13.92677 -13.67305 -13.46690 -13.34782 -13.27515 -13.26264 -13.17641 -13.04785 -12.80189 -12.64596 -12.60817 -12.36533 -12.28587 -11.78008 -11.69099 -11.56897 -11.31039 -10.91028 -10.52300 -10.46960 -10.09561 -9.40396 -8.66790 -8.46080 -6.28858 -0.74756 0.90026 1.17897 1.40014 1.47526 1.52295 1.54828 1.98595 2.21575 2.26885 2.82320 2.86236 3.22351 3.44330 3.61863 3.73883 3.75145 3.95637 4.09358 4.38582 4.42374 4.48365 4.51466 4.53071 4.74455 4.86486 4.89638 4.95024 5.05836 5.14355 5.15539 5.20506 5.37401 5.43654 5.47817 5.74580 5.84085 5.97791 6.13298 6.18944 6.23026 6.42009 6.75656 6.99932 7.07382 7.19988 7.69198 8.46738 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.031992 B = 0.001671 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.007967 B =16748.978805 C =17288.392278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.605 4.605 3 S 2.616 3.384 4 O -0.998 6.998 5 O -0.996 6.996 6 N -1.118 6.118 7 C 0.108 3.892 8 C 0.131 3.869 9 N -0.724 5.724 10 C 0.691 3.309 11 O -0.626 6.626 12 N -0.656 5.656 13 C 0.041 3.959 14 C -0.110 4.110 15 C -0.168 4.168 16 C 0.062 3.938 17 C -0.498 4.498 18 H 0.080 0.920 19 C 0.021 3.979 20 N -0.849 5.849 21 Si 0.990 3.010 22 H -0.258 1.258 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.108 4.108 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.424 0.576 33 H 0.093 0.907 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.418 0.582 38 H 0.418 0.582 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.281 0.719 42 H 0.113 0.887 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.061 -8.655 1.477 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.739 4.739 3 S 2.712 3.288 4 O -0.989 6.989 5 O -0.986 6.986 6 N -0.878 5.878 7 C -0.019 4.019 8 C 0.005 3.995 9 N -0.383 5.383 10 C 0.391 3.609 11 O -0.506 6.506 12 N -0.304 5.304 13 C -0.053 4.053 14 C -0.131 4.131 15 C -0.188 4.188 16 C 0.060 3.940 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.477 5.477 21 Si 0.811 3.189 22 H -0.182 1.182 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.128 4.128 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.179 0.821 31 H 0.175 0.825 32 H 0.259 0.741 33 H 0.111 0.889 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.255 0.745 38 H 0.255 0.745 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.087 -7.175 2.276 27.151 hybrid contribution 1.001 -0.346 0.129 1.067 sum -25.086 -7.522 2.405 26.300 Atomic orbital electron populations 1.21708 0.90468 1.06486 1.03618 1.30286 1.07171 1.21980 1.14457 1.04701 0.72693 0.78751 0.72614 1.93565 1.83491 1.75340 1.46491 1.93562 1.83741 1.74441 1.46808 1.55301 1.25807 1.78637 1.28072 1.21512 0.90730 1.00428 0.89207 1.21265 0.91327 0.98285 0.88640 1.44582 1.04903 1.59465 1.29361 1.16206 0.82616 0.80279 0.81786 1.90936 1.66297 1.47072 1.46301 1.41806 1.05014 1.59840 1.23785 1.17108 0.81952 0.95860 1.10365 1.20682 0.94560 0.97130 1.00708 1.21156 0.92570 0.99770 1.05299 1.18064 0.94075 0.90872 0.91008 1.19732 0.92281 1.32801 1.08095 0.90236 1.26839 1.06142 0.92144 0.93856 1.69915 1.39480 1.27074 1.11257 0.85133 0.75584 0.79438 0.78745 1.18212 1.19953 1.18324 1.20947 0.94245 0.97959 1.09575 1.20417 0.93643 0.96530 1.02216 0.87858 0.91171 0.90878 0.82096 0.82477 0.74084 0.88920 0.86979 0.91300 0.92758 0.74466 0.74470 0.88653 0.88028 0.90870 0.86884 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 9.92 71.98 0.71 -0.07 16 2 C -0.61 -2.03 6.79 71.98 0.49 -1.54 16 3 S 2.62 33.13 5.46 -56.49 -0.31 32.82 16 4 O -1.00 -20.84 18.08 -127.65 -2.31 -23.15 16 5 O -1.00 -20.23 17.49 -127.65 -2.23 -22.47 16 6 N -1.12 -11.60 5.88 -187.49 -1.10 -12.70 16 7 C 0.11 0.94 6.25 86.38 0.54 1.48 16 8 C 0.13 2.28 5.82 86.38 0.50 2.78 16 9 N -0.72 -13.99 5.56 -478.54 -2.66 -16.65 16 10 C 0.69 22.60 8.40 179.05 1.50 24.11 16 11 O -0.63 -28.10 13.76 -3.94 -0.05 -28.15 16 12 N -0.66 -20.45 5.31 -316.78 -1.68 -22.13 16 13 C 0.04 1.76 6.31 38.57 0.24 2.01 16 14 C -0.11 -5.69 8.61 22.13 0.19 -5.50 16 15 C -0.17 -9.52 8.61 22.48 0.19 -9.33 16 16 C 0.06 3.44 5.55 -21.28 -0.12 3.32 16 17 C -0.50 -27.47 9.02 23.39 0.21 -27.26 16 18 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 19 C 0.02 1.12 5.42 85.24 0.46 1.59 16 20 N -0.85 -47.95 10.61 21.82 0.23 -47.72 16 21 Si 0.99 40.15 29.56 68.60 2.03 42.18 16 22 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 25 C -0.21 -9.77 9.74 22.48 0.22 -9.55 16 26 C -0.11 -4.35 9.90 22.13 0.22 -4.13 16 27 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 31 H 0.16 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.42 4.26 8.62 -96.74 -0.83 3.42 16 33 H 0.09 0.78 7.69 -2.39 -0.02 0.76 16 34 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.42 4.18 8.49 -92.71 -0.79 3.39 16 38 H 0.42 8.65 8.83 -92.71 -0.82 7.83 16 39 H 0.10 5.10 6.22 -2.91 -0.02 5.08 16 40 H 0.10 6.22 6.15 -2.91 -0.02 6.20 16 41 H 0.28 14.62 8.30 -92.71 -0.77 13.85 16 42 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -88.03 376.76 -4.09 -92.12 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -1.37 Total: 27.96 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 5.37 Total: -22.10 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -5.21 Total: -99.21 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -4.60 Total: -73.77 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Atomic # 16 Polarization: 33.13 SS G_CDS: -0.31 Total: 32.82 kcal Total: -88.03 -4.09 -92.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061106919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.826 kcal (2) G-P(sol) polarization free energy of solvation -88.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds