Wall clock time and date at job start Tue Mar 31 2020 23:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47004 * 2 1 4 4 C 1.50702 * 109.46893 * 240.00669 * 2 1 3 5 5 H 1.08004 * 119.99798 * 239.99919 * 4 2 1 6 6 C 1.37874 * 120.00308 * 59.99660 * 4 2 1 7 7 N 1.31514 * 119.99959 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46801 * 90.00372 * 8 6 4 10 10 H 1.48499 * 109.47277 * 210.00119 * 8 6 4 11 11 H 1.48496 * 109.47323 * 330.00479 * 8 6 4 12 12 N 1.46500 * 109.47642 * 120.00623 * 2 1 3 13 13 C 1.34782 * 119.99592 * 275.00128 * 12 2 1 14 14 O 1.21275 * 119.99996 * 359.97438 * 13 12 2 15 15 C 1.50699 * 119.99815 * 179.97438 * 13 12 2 16 16 N 1.46494 * 109.47213 * 179.97438 * 15 13 12 17 17 C 1.35624 * 119.75111 * 89.99870 * 16 15 13 18 18 N 1.30363 * 121.79833 * 179.97438 * 17 16 15 19 19 C 1.34265 * 121.13244 * 0.02562 * 18 17 16 20 20 C 1.47064 * 134.25551 * 179.97438 * 19 18 17 21 21 C 1.39341 * 134.08181 * 0.02562 * 20 19 18 22 22 C 1.37742 * 119.70380 * 179.97438 * 21 20 19 23 23 C 1.38732 * 120.19838 * 359.97438 * 22 21 20 24 24 C 1.37787 * 120.66452 * 0.04393 * 23 22 21 25 25 C 1.39073 * 120.07006 * 359.91277 * 24 23 22 26 26 O 1.34970 * 132.55088 * 179.76802 * 25 24 23 27 27 C 1.34913 * 111.32585 * 179.91474 * 26 25 24 28 28 C 1.35032 * 119.74714 * 269.97386 * 16 15 13 29 29 O 1.21969 * 120.75617 * 0.02562 * 28 16 15 30 30 H 1.09004 * 109.46677 * 299.99388 * 1 2 3 31 31 H 1.09000 * 109.47342 * 59.99434 * 1 2 3 32 32 H 1.09003 * 109.47004 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00326 * 179.97438 * 7 6 4 34 34 H 0.96992 * 120.00347 * 94.99565 * 12 2 1 35 35 H 1.08998 * 109.47069 * 59.99390 * 15 13 12 36 36 H 1.09000 * 109.47014 * 299.99805 * 15 13 12 37 37 H 1.08000 * 119.10091 * 359.97438 * 17 16 15 38 38 H 1.08000 * 120.14296 * 359.94640 * 21 20 19 39 39 H 1.08000 * 119.89760 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.66736 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.96689 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3224 -1.1192 -4.0081 9 1 1.3446 -2.1612 -4.4126 10 1 2.4871 -0.1398 -5.1121 11 1 3.6307 -1.7563 -3.7122 12 7 2.0185 -0.6907 1.1960 13 6 2.1472 -0.0184 2.3571 14 8 1.8591 1.1584 2.4115 15 6 2.6491 -0.7290 3.5876 16 7 2.6991 0.2124 4.7089 17 6 1.6159 0.3613 5.5114 18 7 1.6168 1.1869 6.5203 19 6 2.6975 1.9297 6.8085 20 6 3.0121 2.9252 7.8442 21 6 2.3035 3.4681 8.9141 22 6 2.9021 4.4096 9.7219 23 6 4.2050 4.8159 9.4726 24 6 4.9163 4.2871 8.4177 25 6 4.3311 3.3346 7.5903 26 8 4.7811 2.6658 6.5078 27 6 3.8429 1.8246 6.0258 28 6 3.8234 0.9249 4.9359 29 8 4.8002 0.7947 4.2172 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7093 1.1621 -3.4843 34 1 2.2491 -1.6318 1.1524 35 1 3.6482 -1.1215 3.3983 36 1 1.9762 -1.5508 3.8324 37 1 0.7284 -0.2200 5.3092 38 1 1.2892 3.1523 9.1089 39 1 2.3556 4.8327 10.5517 40 1 4.6661 5.5544 10.1116 41 1 5.9301 4.6113 8.2342 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:53 Heat of formation + Delta-G solvation = 1.628353 kcal Electronic energy + Delta-G solvation = -28436.919755 eV Core-core repulsion = 24284.244927 eV Total energy + Delta-G solvation = -4152.674828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.05875 -41.20517 -38.89052 -38.16248 -37.74150 -35.25060 -34.63780 -32.54423 -31.99813 -30.72462 -30.26485 -29.57389 -27.71804 -25.33323 -24.98834 -24.54323 -23.07186 -21.79898 -21.41995 -19.75603 -19.32337 -18.92237 -17.89740 -17.62445 -16.93093 -16.63079 -16.08931 -15.94695 -15.66226 -15.18279 -14.93574 -14.73370 -14.66389 -14.44165 -14.06673 -13.95408 -13.70915 -13.34128 -13.12517 -12.56500 -12.53112 -12.40809 -12.36040 -11.75365 -11.43092 -11.18677 -11.07307 -10.99618 -10.84258 -10.63851 -10.41001 -10.30304 -10.17435 -9.61173 -9.18187 -9.12719 -9.01374 -8.63533 -8.13840 -8.09994 -6.18225 -4.28176 0.04267 0.80232 1.14265 1.56373 1.79206 2.67163 3.03950 3.19525 3.21268 3.28683 3.30849 3.40575 3.45938 3.85492 3.88427 4.24355 4.30755 4.33734 4.52327 4.70661 4.73795 4.85491 4.96940 5.00681 5.09544 5.14632 5.21588 5.28095 5.59685 5.80073 5.90165 6.00381 6.06447 6.10216 6.26742 6.70569 6.71684 6.83118 7.03433 7.27731 7.40755 7.48650 7.56048 7.60575 7.81121 8.06129 8.45114 8.65872 8.89868 9.39187 10.87768 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.002253 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.971581 B =12426.482216 C =12615.757475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.487 3.513 14 O -0.542 6.542 15 C 0.070 3.930 16 N -0.497 5.497 17 C 0.380 3.620 18 N -0.499 5.499 19 C 0.124 3.876 20 C -0.122 4.122 21 C -0.041 4.041 22 C -0.145 4.145 23 C -0.073 4.073 24 C -0.117 4.117 25 C 0.093 3.907 26 O -0.159 6.159 27 C -0.084 4.084 28 C 0.567 3.433 29 O -0.507 6.507 30 H 0.014 0.986 31 H 0.091 0.909 32 H 0.028 0.972 33 H 0.265 0.735 34 H 0.392 0.608 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.216 0.784 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -0.047 24.614 24.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.347 5.347 13 C 0.269 3.731 14 O -0.420 6.420 15 C -0.055 4.055 16 N -0.218 5.218 17 C 0.095 3.905 18 N -0.220 5.220 19 C 0.007 3.993 20 C -0.123 4.123 21 C -0.059 4.059 22 C -0.163 4.163 23 C -0.091 4.091 24 C -0.135 4.135 25 C 0.044 3.956 26 O -0.058 6.058 27 C -0.137 4.137 28 C 0.362 3.638 29 O -0.382 6.382 30 H 0.033 0.967 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.232 0.768 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.673 1.104 24.461 24.543 hybrid contribution 0.911 -0.934 -1.504 1.991 sum 2.584 0.169 22.957 23.103 Atomic orbital electron populations 1.22079 0.98169 0.99213 1.01034 1.18818 0.91132 0.94061 0.79666 0.93307 1.21185 1.32681 1.13361 0.90182 0.91920 1.24896 0.94760 0.94925 0.99149 1.69895 1.35775 1.22297 1.24035 0.86415 0.79191 0.79244 0.82079 1.20490 1.21038 1.19796 1.46477 1.64434 1.13705 1.10089 1.20369 0.79687 0.87977 0.85036 1.90737 1.50909 1.15563 1.84773 1.22060 1.07067 0.91343 0.85070 1.46013 1.12747 1.36341 1.26701 1.25060 0.90031 0.91794 0.83613 1.67667 1.25777 1.09913 1.18655 1.20027 0.89302 0.95545 0.94456 1.18954 0.94943 1.00035 0.98411 1.20644 0.99685 0.94146 0.91433 1.21093 0.95562 0.98854 1.00819 1.21038 0.94192 0.98280 0.95586 1.20020 1.01539 0.96901 0.95080 1.19771 0.92403 0.95421 0.87960 1.83956 1.37932 1.45945 1.37977 1.21081 0.90368 1.01345 1.00925 1.15341 0.83510 0.81022 0.83911 1.91017 1.33043 1.65514 1.48624 0.96668 0.89020 0.95278 0.92477 0.77553 0.85155 0.85252 0.76810 0.84544 0.84681 0.84219 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.26 37.16 0.34 -3.11 16 2 C 0.26 6.49 2.56 -69.08 -0.18 6.31 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 N -0.70 -13.27 5.07 -54.93 -0.28 -13.55 16 13 C 0.49 8.82 7.86 -10.98 -0.09 8.73 16 14 O -0.54 -12.49 16.09 5.56 0.09 -12.40 16 15 C 0.07 0.84 5.84 -5.20 -0.03 0.81 16 16 N -0.50 -6.86 2.08 -122.12 -0.25 -7.11 16 17 C 0.38 4.30 11.48 -89.96 -1.03 3.27 16 18 N -0.50 -6.64 10.44 -10.80 -0.11 -6.75 16 19 C 0.12 1.84 7.56 -82.90 -0.63 1.22 16 20 C -0.12 -1.59 6.38 -105.08 -0.67 -2.26 16 21 C -0.04 -0.40 10.09 -39.35 -0.40 -0.80 16 22 C -0.15 -1.07 10.04 -39.58 -0.40 -1.46 16 23 C -0.07 -0.52 10.01 -39.56 -0.40 -0.91 16 24 C -0.12 -1.11 10.06 -39.44 -0.40 -1.51 16 25 C 0.09 1.24 7.36 -38.45 -0.28 0.96 16 26 O -0.16 -2.61 10.58 2.14 0.02 -2.59 16 27 C -0.08 -1.41 7.35 -38.07 -0.28 -1.69 16 28 C 0.57 9.93 7.46 -14.96 -0.11 9.82 16 29 O -0.51 -10.44 16.76 4.95 0.08 -10.35 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.39 6.05 8.54 -40.82 -0.35 5.70 16 35 H 0.13 1.50 7.43 -51.93 -0.39 1.12 16 36 H 0.13 0.81 8.01 -51.93 -0.42 0.40 16 37 H 0.22 1.34 8.02 -52.49 -0.42 0.92 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 39 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -37.07 360.75 -8.70 -45.77 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.36 Total: 3.22 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -4.94 Total: 6.92 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.02 Total: -51.39 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.20 Total: -25.34 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.07 -8.70 -45.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.400 kcal (2) G-P(sol) polarization free energy of solvation -37.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds