Wall clock time and date at job start Tue Mar 31 2020 23:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47101 * 2 1 4 4 C 1.37097 * 119.99851 * 264.76366 * 3 2 1 5 5 H 1.08001 * 119.99867 * 138.85147 * 4 3 2 6 6 C 1.38946 * 120.00320 * 318.85924 * 4 3 2 7 7 N 1.31416 * 119.99820 * 341.81691 * 6 4 3 8 8 Si 1.86797 * 120.00314 * 161.82513 * 6 4 3 9 9 H 1.48499 * 109.46933 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47299 * 119.99708 * 8 6 4 11 11 H 1.48499 * 109.47282 * 239.99800 * 8 6 4 12 12 C 1.34780 * 119.99947 * 84.76390 * 3 2 1 13 13 O 1.21293 * 119.99544 * 179.97438 * 12 3 2 14 14 C 1.50693 * 120.00157 * 0.02562 * 12 3 2 15 15 N 1.46499 * 109.47138 * 179.97438 * 14 12 3 16 16 C 1.35615 * 119.74893 * 90.00031 * 15 14 12 17 17 N 1.30363 * 121.79695 * 179.97438 * 16 15 14 18 18 C 1.34260 * 121.14174 * 0.02562 * 17 16 15 19 19 C 1.47062 * 134.27383 * 180.02562 * 18 17 16 20 20 C 1.39337 * 134.08602 * 0.02562 * 19 18 17 21 21 C 1.37748 * 119.70946 * 179.97438 * 20 19 18 22 22 C 1.38727 * 120.19710 * 359.79989 * 21 20 19 23 23 C 1.37789 * 120.66294 * 0.43772 * 22 21 20 24 24 C 1.39072 * 120.06568 * 359.52326 * 23 22 21 25 25 O 1.34966 * 132.54004 * 180.24650 * 24 23 22 26 26 C 1.34918 * 111.32377 * 180.02562 * 25 24 23 27 27 C 1.35028 * 119.75097 * 269.97350 * 15 14 12 28 28 O 1.21981 * 120.75385 * 0.04536 * 27 15 14 29 29 H 1.09000 * 109.47457 * 300.00088 * 1 2 3 30 30 H 1.09007 * 109.47055 * 60.00140 * 1 2 3 31 31 H 1.09005 * 109.47127 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47457 * 239.99912 * 2 1 3 33 33 H 1.08998 * 109.47216 * 119.99800 * 2 1 3 34 34 H 0.96998 * 120.00021 * 179.97438 * 7 6 4 35 35 H 1.09007 * 109.47349 * 59.99823 * 14 12 3 36 36 H 1.09001 * 109.47176 * 300.00025 * 14 12 3 37 37 H 1.07999 * 119.10598 * 359.95468 * 16 15 14 38 38 H 1.08003 * 120.14956 * 359.94848 * 20 19 18 39 39 H 1.08000 * 119.89943 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.67371 * 180.24105 * 22 21 20 41 41 H 1.07993 * 119.96804 * 179.79840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3490 1.9914 -1.1824 5 1 2.0744 3.0218 -1.3536 6 6 3.0372 1.2841 -2.1605 7 7 3.6792 0.1818 -1.8450 8 14 3.0500 1.9003 -3.9239 9 1 2.2576 3.1528 -4.0163 10 1 4.4489 2.1668 -4.3450 11 1 2.4531 0.8709 -4.8123 12 6 2.1425 2.0521 1.1624 13 8 2.5473 3.1955 1.1623 14 6 1.7796 1.3812 2.4620 15 7 2.0016 2.3125 3.5709 16 6 0.9981 3.1311 3.9734 17 7 1.1516 3.9744 4.9556 18 6 2.3179 4.0686 5.6139 19 6 2.8018 4.8916 6.7326 20 6 2.2274 5.8816 7.5272 21 6 2.9715 6.4749 8.5230 22 6 4.2858 6.0863 8.7376 23 6 4.8671 5.1120 7.9557 24 6 4.1333 4.4996 6.9455 25 8 4.4389 3.5357 6.0515 26 6 3.3890 3.2582 5.2510 27 6 3.2037 2.3489 4.1849 28 8 4.1096 1.6150 3.8265 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.1594 -0.3122 -2.5279 35 1 2.4017 0.4969 2.6006 36 1 0.7303 1.0872 2.4385 37 1 0.0458 3.0834 3.4661 38 1 1.2033 6.1829 7.3627 39 1 2.5295 7.2429 9.1404 40 1 4.8603 6.5544 9.5232 41 1 5.8921 4.8204 8.1304 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:11 Heat of formation + Delta-G solvation = 13.301766 kcal Electronic energy + Delta-G solvation = -29082.850169 eV Core-core repulsion = 24930.681537 eV Total energy + Delta-G solvation = -4152.168631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.87040 -40.94886 -38.58018 -38.01555 -37.49614 -35.30319 -34.49805 -32.23103 -31.80123 -30.57037 -29.98108 -29.61961 -28.28507 -25.14884 -24.76400 -24.06071 -22.89540 -22.38924 -21.57466 -19.76783 -18.90877 -18.73335 -17.45709 -17.23032 -16.78228 -16.38525 -16.11823 -15.88141 -15.44715 -15.15190 -14.74391 -14.53612 -14.25491 -14.14976 -13.96154 -13.78253 -13.57031 -13.12672 -13.09802 -12.87564 -12.39726 -12.31047 -12.29302 -11.89724 -11.50496 -11.31004 -11.19846 -11.12278 -10.76754 -10.54198 -10.39463 -10.36546 -10.24708 -9.95021 -9.35417 -9.04586 -8.91583 -8.59587 -7.93111 -7.58822 -6.42286 -4.12531 0.22879 0.94584 1.28926 1.80667 2.00741 2.91561 3.09912 3.21752 3.27332 3.37435 3.58324 3.62039 3.67205 4.06044 4.08456 4.40256 4.50349 4.62652 4.70567 4.87368 4.91352 4.93743 5.09818 5.12768 5.15995 5.38786 5.41634 5.52967 5.73563 5.79060 5.93857 6.01640 6.02187 6.11332 6.13675 6.26119 6.27868 6.34536 6.49145 6.71732 6.86660 7.07274 7.49217 7.70541 7.82701 8.14050 8.34422 9.02988 9.21924 9.79052 10.62601 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.002702 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.238515 B =10361.824111 C =10650.356431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.429 5.429 4 C -0.312 4.312 5 H 0.091 0.909 6 C 0.040 3.960 7 N -0.865 5.865 8 Si 0.921 3.079 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.445 3.555 13 O -0.569 6.569 14 C 0.075 3.925 15 N -0.491 5.491 16 C 0.382 3.618 17 N -0.505 5.505 18 C 0.123 3.877 19 C -0.120 4.120 20 C -0.041 4.041 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.117 4.117 24 C 0.092 3.908 25 O -0.160 6.160 26 C -0.084 4.084 27 C 0.566 3.434 28 O -0.505 6.505 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.213 0.787 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 4.335 17.256 19.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.028 4.028 3 N -0.148 5.148 4 C -0.440 4.440 5 H 0.109 0.891 6 C -0.165 4.165 7 N -0.502 5.502 8 Si 0.747 3.253 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.231 3.769 13 O -0.451 6.451 14 C -0.050 4.050 15 N -0.211 5.211 16 C 0.098 3.902 17 N -0.227 5.227 18 C 0.006 3.994 19 C -0.122 4.122 20 C -0.060 4.060 21 C -0.165 4.165 22 C -0.093 4.093 23 C -0.136 4.136 24 C 0.043 3.957 25 O -0.059 6.059 26 C -0.138 4.138 27 C 0.360 3.640 28 O -0.380 6.380 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.229 0.771 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.157 0.843 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.441 4.677 17.242 18.991 hybrid contribution 0.679 -0.364 -1.249 1.467 sum -5.762 4.313 15.993 17.538 Atomic orbital electron populations 1.22232 0.97769 1.00755 1.01592 1.21584 0.91846 0.85362 1.04045 1.43417 1.55312 1.11693 1.04399 1.19424 1.35541 0.98771 0.90260 0.89136 1.25478 0.93761 0.96483 1.00792 1.69936 1.28816 1.17350 1.34119 0.85964 0.78289 0.79055 0.81993 1.19097 1.20651 1.20474 1.20287 0.83497 0.88589 0.84557 1.90594 1.49845 1.18521 1.86161 1.22183 1.04534 0.92986 0.85321 1.46072 1.11301 1.34192 1.29565 1.24983 0.93071 0.83116 0.89077 1.67662 1.22607 1.21974 1.10482 1.20013 0.89441 0.94959 0.95036 1.18957 0.94081 1.01068 0.98134 1.20631 1.00167 0.92569 0.92591 1.21066 0.94574 1.01653 0.99214 1.21008 0.95151 0.95157 0.97992 1.20001 1.00535 0.98454 0.94590 1.19777 0.93505 0.90180 0.92195 1.83952 1.35366 1.47944 1.38630 1.21141 0.88029 1.04958 0.99682 1.15343 0.82826 0.83951 0.81875 1.91022 1.39089 1.42488 1.65407 0.94020 0.92038 0.92679 0.87397 0.93153 0.92057 0.85889 0.86529 0.77082 0.84627 0.84799 0.84338 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.15 37.16 0.38 -2.10 16 2 C 0.10 1.87 5.41 -4.04 -0.02 1.85 16 3 N -0.43 -10.20 2.50 -114.82 -0.29 -10.49 16 4 C -0.31 -8.34 8.84 -14.93 -0.13 -8.47 16 5 H 0.09 2.53 7.82 -52.49 -0.41 2.12 16 6 C 0.04 1.04 4.95 -17.47 -0.09 0.96 16 7 N -0.87 -23.03 11.61 55.50 0.64 -22.39 16 8 Si 0.92 20.20 29.59 -169.99 -5.03 15.17 16 9 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.44 10.28 7.66 -10.99 -0.08 10.19 16 13 O -0.57 -15.58 16.34 5.55 0.09 -15.48 16 14 C 0.07 1.27 4.45 -5.20 -0.02 1.25 16 15 N -0.49 -8.52 2.08 -122.12 -0.25 -8.77 16 16 C 0.38 5.40 11.48 -89.96 -1.03 4.37 16 17 N -0.50 -7.79 10.44 -10.81 -0.11 -7.91 16 18 C 0.12 2.07 7.57 -82.90 -0.63 1.44 16 19 C -0.12 -1.76 6.38 -105.09 -0.67 -2.43 16 20 C -0.04 -0.45 10.09 -39.35 -0.40 -0.85 16 21 C -0.15 -1.24 10.04 -39.58 -0.40 -1.64 16 22 C -0.07 -0.61 10.01 -39.57 -0.40 -1.01 16 23 C -0.12 -1.26 10.06 -39.44 -0.40 -1.66 16 24 C 0.09 1.37 7.36 -38.45 -0.28 1.08 16 25 O -0.16 -2.92 10.58 2.14 0.02 -2.90 16 26 C -0.08 -1.61 7.35 -38.07 -0.28 -1.89 16 27 C 0.57 11.64 7.46 -14.97 -0.11 11.53 16 28 O -0.51 -12.13 16.76 4.93 0.08 -12.05 16 29 H 0.04 0.53 6.60 -51.93 -0.34 0.19 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.11 2.40 5.76 -51.93 -0.30 2.10 16 33 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.12 2.13 6.71 -51.92 -0.35 1.78 16 36 H 0.12 1.37 6.41 -51.93 -0.33 1.04 16 37 H 0.21 1.94 8.02 -52.49 -0.42 1.52 16 38 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 355.25 15.07 5.35 5.35 Total: -1.00 -36.68 355.25 -8.22 -44.90 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.17 Total: 1.94 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: -4.56 Total: 12.62 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.01 Total: -49.56 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: 0.20 Total: -30.43 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.68 -8.22 -44.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.204 kcal (2) G-P(sol) polarization free energy of solvation -36.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds