Wall clock time and date at job start Tue Mar 31 2020 23:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47105 * 2 1 4 4 C 1.37092 * 120.00041 * 264.74875 * 3 2 1 5 5 H 1.08003 * 120.00284 * 146.16580 * 4 3 2 6 6 C 1.38952 * 120.00175 * 326.16618 * 4 3 2 7 7 N 1.31413 * 119.99858 * 337.68071 * 6 4 3 8 8 Si 1.86797 * 120.00455 * 157.68112 * 6 4 3 9 9 H 1.48497 * 109.46953 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47171 * 119.99746 * 8 6 4 11 11 H 1.48495 * 109.47242 * 239.99867 * 8 6 4 12 12 C 1.34780 * 119.99934 * 84.74523 * 3 2 1 13 13 O 1.21291 * 119.99872 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00250 * 0.02562 * 12 3 2 15 15 S 1.81389 * 109.47267 * 179.97438 * 14 12 3 16 16 C 1.81403 * 103.00048 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.47463 * 305.00420 * 16 15 14 18 18 C 1.52999 * 109.46894 * 65.00243 * 16 15 14 19 19 C 1.50703 * 109.47206 * 184.99565 * 16 15 14 20 20 O 1.21271 * 120.00104 * 340.01104 * 19 16 15 21 21 N 1.34773 * 119.99744 * 159.99734 * 19 16 15 22 22 C 1.39507 * 119.99937 * 180.02562 * 21 19 16 23 23 C 1.42021 * 126.89340 * 0.02562 * 22 21 19 24 24 C 1.35252 * 103.95765 * 179.97438 * 23 22 21 25 25 C 1.50697 * 126.69782 * 180.02562 * 24 23 22 26 26 O 1.34087 * 106.60836 * 0.02562 * 24 23 22 27 27 N 1.20920 * 111.74441 * 359.72883 * 26 24 23 28 28 H 1.08998 * 109.46940 * 60.00549 * 1 2 3 29 29 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47617 * 300.00098 * 1 2 3 31 31 H 1.08997 * 109.47617 * 239.99902 * 2 1 3 32 32 H 1.08998 * 109.46940 * 119.99451 * 2 1 3 33 33 H 0.96999 * 120.00232 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47102 * 300.00283 * 14 12 3 35 35 H 1.09005 * 109.46827 * 59.99686 * 14 12 3 36 36 H 1.08997 * 109.47628 * 179.97438 * 18 16 15 37 37 H 1.08994 * 109.47310 * 300.00300 * 18 16 15 38 38 H 1.09007 * 109.47419 * 60.00094 * 18 16 15 39 39 H 0.97004 * 120.00703 * 0.02562 * 21 19 16 40 40 H 1.08000 * 128.02429 * 0.02562 * 23 22 21 41 41 H 1.09001 * 109.46733 * 89.99919 * 25 24 23 42 42 H 1.08995 * 109.47155 * 210.00336 * 25 24 23 43 43 H 1.08999 * 109.47279 * 330.00668 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1815 3.0507 -1.3088 6 6 2.9006 1.2467 -2.2178 7 7 3.5052 0.1089 -1.9594 8 14 2.7825 1.8630 -3.9772 9 1 2.0591 3.1596 -4.0000 10 1 4.1484 2.0491 -4.5293 11 1 2.0466 0.8705 -4.8010 12 6 2.1422 2.0522 1.1623 13 8 2.5460 3.1959 1.1623 14 6 1.7789 1.3815 2.4620 15 16 2.0533 2.5347 3.8350 16 6 1.5678 1.5627 5.2876 17 1 0.5524 1.1901 5.1527 18 6 2.5263 0.3819 5.4547 19 6 1.6244 2.4333 6.5164 20 8 2.2831 3.4515 6.5083 21 7 0.9429 2.0803 7.6243 22 6 0.9949 2.8865 8.7617 23 6 1.7139 4.1018 8.9131 24 6 1.4410 4.4865 10.1807 25 6 1.9497 5.7230 10.8759 26 8 0.6293 3.5531 10.6982 27 7 0.3876 2.6773 9.9002 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8897 -0.4111 -2.6823 34 1 0.7295 1.0874 2.4382 35 1 2.4009 0.4972 2.6008 36 1 2.2350 -0.2020 6.3277 37 1 2.4855 -0.2477 4.5659 38 1 3.5418 0.7545 5.5896 39 1 0.4162 1.2658 7.6309 40 1 2.3341 4.6031 8.1848 41 1 1.2549 6.5460 10.7081 42 1 2.0332 5.5302 11.9454 43 1 2.9290 5.9873 10.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:14 Heat of formation + Delta-G solvation = 8.324875 kcal Electronic energy + Delta-G solvation = -26629.078791 eV Core-core repulsion = 22612.138297 eV Total energy + Delta-G solvation = -4016.940494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.10559 -40.36786 -38.56719 -35.86827 -35.07832 -34.07354 -33.59096 -32.21160 -31.82771 -29.60227 -29.18655 -28.09919 -25.46888 -24.75175 -23.74362 -22.37559 -21.73203 -20.92879 -19.31804 -17.93205 -17.75648 -17.38455 -16.97904 -16.87784 -16.11596 -15.88261 -15.58393 -15.09304 -14.63374 -14.40698 -14.19522 -13.91371 -13.82008 -13.63778 -13.59417 -13.04804 -13.02955 -12.80102 -12.75293 -12.47856 -12.13284 -11.98138 -11.88483 -11.66968 -11.49800 -11.41597 -11.15617 -11.04750 -10.44511 -10.35447 -10.25576 -10.18028 -9.65942 -9.54456 -9.12889 -9.02225 -8.57280 -7.59853 -7.34245 -6.40735 -4.01429 1.12679 1.40549 1.74150 2.33751 2.56379 2.72900 2.88667 3.11327 3.23457 3.30372 3.76663 3.93863 4.10012 4.25889 4.58100 4.61149 4.71222 4.75814 4.82010 4.94034 4.95800 5.05554 5.24795 5.25927 5.38847 5.47005 5.50736 5.51408 5.65155 5.69880 5.84429 5.92010 6.11134 6.12028 6.22427 6.39484 6.72419 6.78959 7.16801 7.53819 7.61762 8.03948 8.14197 8.41534 9.09421 9.30993 9.89246 10.63111 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.002060 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.927186 B =13590.565452 C =14091.900282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 N -0.434 5.434 4 C -0.305 4.305 5 H 0.095 0.905 6 C 0.035 3.965 7 N -0.868 5.868 8 Si 0.919 3.081 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.471 3.529 13 O -0.562 6.562 14 C -0.129 4.129 15 S -0.103 6.103 16 C -0.119 4.119 17 H 0.110 0.890 18 C -0.143 4.143 19 C 0.549 3.451 20 O -0.484 6.484 21 N -0.631 5.631 22 C 0.251 3.749 23 C -0.226 4.226 24 C -0.024 4.024 25 C -0.073 4.073 26 O 0.094 5.906 27 N -0.393 5.393 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.046 0.954 33 H 0.268 0.732 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.419 0.581 40 H 0.192 0.808 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 -0.814 20.939 21.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.031 4.031 3 N -0.154 5.154 4 C -0.433 4.433 5 H 0.113 0.887 6 C -0.169 4.169 7 N -0.506 5.506 8 Si 0.745 3.255 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.258 3.742 13 O -0.445 6.445 14 C -0.280 4.280 15 S 0.123 5.877 16 C -0.251 4.251 17 H 0.128 0.872 18 C -0.202 4.202 19 C 0.334 3.666 20 O -0.354 6.354 21 N -0.284 5.284 22 C 0.002 3.998 23 C -0.249 4.249 24 C -0.088 4.088 25 C -0.131 4.131 26 O 0.034 5.966 27 N -0.110 5.110 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.256 0.744 40 H 0.209 0.791 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.534 0.469 21.176 21.892 hybrid contribution -0.451 -1.519 -1.351 2.082 sum -5.985 -1.050 19.825 20.735 Atomic orbital electron populations 1.22216 0.98111 1.00409 1.01580 1.21637 0.91790 0.85417 1.04227 1.43461 1.55585 1.11862 1.04463 1.19531 1.39826 0.95643 0.88262 0.88750 1.25358 0.94377 0.96505 1.00676 1.69923 1.32491 1.15279 1.32938 0.85983 0.78216 0.79167 0.82090 1.19086 1.20699 1.20560 1.19379 0.83252 0.88052 0.83558 1.90579 1.49812 1.18169 1.85922 1.23824 1.05084 1.01995 0.97108 1.88121 1.87244 1.18107 0.94200 1.23381 1.05018 1.00100 0.96556 0.87209 1.22040 0.99571 0.95443 1.03195 1.19952 0.78231 0.85796 0.82650 1.90708 1.38566 1.24278 1.81896 1.42499 1.50479 1.25950 1.09426 1.20518 0.97844 0.93162 0.88281 1.22775 1.07245 0.96922 0.97938 1.24452 0.95472 0.94821 0.94056 1.20355 1.01949 0.90078 1.00690 1.84784 1.51485 1.25324 1.34990 1.74030 1.24172 1.12231 1.00518 0.92211 0.92980 0.94064 0.86631 0.93546 0.92177 0.88735 0.88340 0.91709 0.90443 0.90295 0.74404 0.79134 0.89228 0.89770 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.15 37.16 0.38 -2.41 16 2 C 0.09 1.92 5.44 -4.04 -0.02 1.90 16 3 N -0.43 -10.69 2.56 -114.81 -0.29 -10.98 16 4 C -0.30 -8.29 8.98 -14.94 -0.13 -8.42 16 5 H 0.09 2.72 7.70 -52.48 -0.40 2.31 16 6 C 0.03 0.90 4.92 -17.47 -0.09 0.82 16 7 N -0.87 -22.71 11.33 55.50 0.63 -22.09 16 8 Si 0.92 20.21 29.61 -169.99 -5.03 15.18 16 9 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.47 11.37 7.61 -10.98 -0.08 11.29 16 13 O -0.56 -15.84 15.69 5.55 0.09 -15.75 16 14 C -0.13 -2.29 4.73 36.01 0.17 -2.12 16 15 S -0.10 -1.81 19.53 -107.50 -2.10 -3.91 16 16 C -0.12 -1.39 3.18 -27.88 -0.09 -1.48 16 17 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.14 -1.40 9.08 37.16 0.34 -1.06 16 19 C 0.55 6.98 6.97 -10.99 -0.08 6.91 16 20 O -0.48 -7.78 13.33 5.57 0.07 -7.70 16 21 N -0.63 -6.67 5.42 -11.43 -0.06 -6.73 16 22 C 0.25 3.06 8.18 -154.82 -1.27 1.80 16 23 C -0.23 -2.63 9.79 -39.20 -0.38 -3.02 16 24 C -0.02 -0.23 7.48 -35.37 -0.26 -0.49 16 25 C -0.07 -0.36 10.45 36.00 0.38 0.02 16 26 O 0.09 1.02 11.19 17.05 0.19 1.21 16 27 N -0.39 -4.79 12.10 31.19 0.38 -4.41 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.64 6.60 -51.93 -0.34 0.30 16 31 H 0.12 2.65 5.34 -51.93 -0.28 2.38 16 32 H 0.05 0.85 6.66 -51.93 -0.35 0.50 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.09 1.44 6.54 -51.92 -0.34 1.10 16 35 H 0.10 1.57 6.42 -51.92 -0.33 1.24 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.73 6.92 -51.93 -0.36 0.37 16 38 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.42 3.14 8.82 -40.82 -0.36 2.78 16 40 H 0.19 2.39 6.22 -52.49 -0.33 2.06 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -34.40 373.66 -7.25 -41.64 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.61 Total: 4.18 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.14 Total: 3.73 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.65 Total: -44.21 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: 0.35 Total: -22.24 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.10 Total: -3.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.40 -7.25 -41.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.969 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds