Wall clock time and date at job start Tue Mar 31 2020 23:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47105 * 2 1 4 4 C 1.37092 * 120.00041 * 264.74875 * 3 2 1 5 5 H 1.08003 * 120.00284 * 146.16580 * 4 3 2 6 6 C 1.38952 * 120.00175 * 326.16618 * 4 3 2 7 7 N 1.31413 * 119.99858 * 337.68071 * 6 4 3 8 8 Si 1.86797 * 120.00455 * 157.68112 * 6 4 3 9 9 H 1.48497 * 109.46953 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47171 * 119.99746 * 8 6 4 11 11 H 1.48495 * 109.47242 * 239.99867 * 8 6 4 12 12 C 1.34780 * 119.99934 * 84.74523 * 3 2 1 13 13 O 1.21291 * 119.99872 * 180.02562 * 12 3 2 14 14 C 1.50699 * 120.00250 * 0.02562 * 12 3 2 15 15 S 1.81389 * 109.47267 * 179.97438 * 14 12 3 16 16 C 1.81403 * 103.00048 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.47463 * 305.00420 * 16 15 14 18 18 C 1.52999 * 109.46894 * 65.00243 * 16 15 14 19 19 C 1.50703 * 109.47206 * 184.99565 * 16 15 14 20 20 O 1.21271 * 120.00104 * 340.01104 * 19 16 15 21 21 N 1.34773 * 119.99744 * 159.99734 * 19 16 15 22 22 C 1.39507 * 119.99937 * 180.02562 * 21 19 16 23 23 C 1.42021 * 126.89340 * 0.02562 * 22 21 19 24 24 C 1.35252 * 103.95765 * 179.97438 * 23 22 21 25 25 C 1.50697 * 126.69782 * 180.02562 * 24 23 22 26 26 O 1.34087 * 106.60836 * 0.02562 * 24 23 22 27 27 N 1.20920 * 111.74441 * 359.72883 * 26 24 23 28 28 H 1.08998 * 109.46940 * 60.00549 * 1 2 3 29 29 H 1.09004 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47617 * 300.00098 * 1 2 3 31 31 H 1.08997 * 109.47617 * 239.99902 * 2 1 3 32 32 H 1.08998 * 109.46940 * 119.99451 * 2 1 3 33 33 H 0.96999 * 120.00232 * 179.97438 * 7 6 4 34 34 H 1.09007 * 109.47102 * 300.00283 * 14 12 3 35 35 H 1.09005 * 109.46827 * 59.99686 * 14 12 3 36 36 H 1.08997 * 109.47628 * 179.97438 * 18 16 15 37 37 H 1.08994 * 109.47310 * 300.00300 * 18 16 15 38 38 H 1.09007 * 109.47419 * 60.00094 * 18 16 15 39 39 H 0.97004 * 120.00703 * 0.02562 * 21 19 16 40 40 H 1.08000 * 128.02429 * 0.02562 * 23 22 21 41 41 H 1.09001 * 109.46733 * 89.99919 * 25 24 23 42 42 H 1.08995 * 109.47155 * 210.00336 * 25 24 23 43 43 H 1.08999 * 109.47279 * 330.00668 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9913 -1.1823 5 1 2.1815 3.0507 -1.3088 6 6 2.9006 1.2467 -2.2178 7 7 3.5052 0.1089 -1.9594 8 14 2.7825 1.8630 -3.9772 9 1 2.0591 3.1596 -4.0000 10 1 4.1484 2.0491 -4.5293 11 1 2.0466 0.8705 -4.8010 12 6 2.1422 2.0522 1.1623 13 8 2.5460 3.1959 1.1623 14 6 1.7789 1.3815 2.4620 15 16 2.0533 2.5347 3.8350 16 6 1.5678 1.5627 5.2876 17 1 0.5524 1.1901 5.1527 18 6 2.5263 0.3819 5.4547 19 6 1.6244 2.4333 6.5164 20 8 2.2831 3.4515 6.5083 21 7 0.9429 2.0803 7.6243 22 6 0.9949 2.8865 8.7617 23 6 1.7139 4.1018 8.9131 24 6 1.4410 4.4865 10.1807 25 6 1.9497 5.7230 10.8759 26 8 0.6293 3.5531 10.6982 27 7 0.3876 2.6773 9.9002 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8897 -0.4111 -2.6823 34 1 0.7295 1.0874 2.4382 35 1 2.4009 0.4972 2.6008 36 1 2.2350 -0.2020 6.3277 37 1 2.4855 -0.2477 4.5659 38 1 3.5418 0.7545 5.5896 39 1 0.4162 1.2658 7.6309 40 1 2.3341 4.6031 8.1848 41 1 1.2549 6.5460 10.7081 42 1 2.0332 5.5302 11.9454 43 1 2.9290 5.9873 10.4768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:13 Heat of formation + Delta-G solvation = -13.997675 kcal Electronic energy + Delta-G solvation = -26630.046769 eV Core-core repulsion = 22612.138297 eV Total energy + Delta-G solvation = -4017.908472 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.95921 -41.36181 -40.40084 -36.96689 -36.81392 -34.92496 -34.38778 -34.08856 -32.71190 -31.26317 -30.73882 -28.69882 -26.69794 -26.31401 -24.62042 -23.96185 -22.61299 -21.88147 -21.04885 -18.82683 -18.78477 -18.61733 -18.38363 -17.91490 -17.82111 -17.13078 -16.83542 -16.56744 -16.11303 -15.87812 -15.55367 -14.91987 -14.72950 -14.59024 -14.39988 -14.39063 -14.12756 -14.00392 -13.81846 -13.59912 -13.36240 -13.25408 -12.99747 -12.92992 -12.84417 -12.73845 -12.66120 -12.28614 -12.26656 -12.08203 -11.82481 -11.27613 -10.93437 -10.71662 -10.48835 -10.44397 -10.01730 -9.50726 -8.71059 -8.37220 -6.06071 0.18249 0.33315 0.83588 1.34580 1.40165 1.42209 1.46925 1.55302 1.65987 1.96644 2.15175 2.28805 2.98328 3.02242 3.12352 3.38363 3.73158 3.84322 3.90109 3.93959 4.03048 4.11556 4.17852 4.32764 4.43567 4.60059 4.63687 4.67939 4.70875 4.72944 4.85098 4.85804 5.02980 5.11163 5.12828 5.26546 5.33081 5.45384 5.58159 5.92251 6.17134 6.49060 6.70225 7.14557 7.20030 7.41953 8.00841 8.64900 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.002060 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.927186 B =13590.565452 C =14091.900282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.090 3.910 3 N -0.446 5.446 4 C -0.340 4.340 5 H 0.062 0.938 6 C 0.005 3.995 7 N -0.884 5.884 8 Si 0.980 3.020 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.261 1.261 12 C 0.454 3.546 13 O -0.617 6.617 14 C -0.102 4.102 15 S -0.185 6.185 16 C -0.092 4.092 17 H 0.149 0.851 18 C -0.142 4.142 19 C 0.549 3.451 20 O -0.524 6.524 21 N -0.615 5.615 22 C 0.237 3.763 23 C -0.259 4.259 24 C -0.002 4.002 25 C -0.074 4.074 26 O 0.092 5.908 27 N -0.405 5.405 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.275 0.725 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.435 0.565 40 H 0.178 0.822 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 -2.810 22.401 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.033 4.033 3 N -0.165 5.165 4 C -0.468 4.468 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.521 5.521 8 Si 0.803 3.197 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.185 1.185 12 C 0.243 3.757 13 O -0.504 6.504 14 C -0.253 4.253 15 S 0.041 5.959 16 C -0.224 4.224 17 H 0.167 0.833 18 C -0.201 4.201 19 C 0.335 3.665 20 O -0.397 6.397 21 N -0.269 5.269 22 C -0.012 4.012 23 C -0.282 4.282 24 C -0.066 4.066 25 C -0.131 4.131 26 O 0.033 5.967 27 N -0.123 5.123 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.275 0.725 40 H 0.195 0.805 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.923 -1.601 22.651 23.740 hybrid contribution 0.003 -0.868 -1.674 1.886 sum -6.920 -2.469 20.977 22.226 Atomic orbital electron populations 1.22116 0.95115 1.02669 1.01369 1.21792 0.94235 0.83066 1.04215 1.43745 1.55445 1.13241 1.04045 1.19392 1.42026 0.94847 0.90548 0.92051 1.26033 0.93451 0.96614 1.03685 1.69974 1.32169 1.15777 1.34202 0.85097 0.78144 0.78690 0.77730 1.19855 1.20518 1.18528 1.20332 0.82294 0.87633 0.85479 1.90539 1.52031 1.20702 1.87133 1.23510 1.07200 1.01262 0.93336 1.88450 1.88184 1.21389 0.97904 1.23342 1.07472 0.99051 0.92518 0.83339 1.22069 0.98042 0.94758 1.05241 1.20150 0.77760 0.85356 0.83266 1.90710 1.40378 1.26073 1.82567 1.42287 1.49904 1.26202 1.08464 1.20751 0.98142 0.93632 0.88710 1.22771 1.08668 0.97720 0.99029 1.25106 0.93299 0.94851 0.93297 1.20626 1.02554 0.88337 1.01609 1.84757 1.51670 1.25482 1.34828 1.74019 1.24735 1.12965 1.00535 0.94203 0.89365 0.92534 0.89063 0.91004 0.91516 0.85535 0.86134 0.88187 0.89460 0.92166 0.72530 0.80510 0.87571 0.87607 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 10.15 71.98 0.73 -4.11 16 2 C 0.09 3.58 5.44 86.38 0.47 4.05 16 3 N -0.45 -22.25 2.56 -635.53 -1.63 -23.88 16 4 C -0.34 -19.16 8.98 84.04 0.75 -18.40 16 5 H 0.06 3.77 7.70 -2.91 -0.02 3.75 16 6 C 0.01 0.26 4.92 84.93 0.42 0.68 16 7 N -0.88 -46.23 11.33 21.66 0.25 -45.99 16 8 Si 0.98 41.87 29.61 68.60 2.03 43.90 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 12 C 0.45 22.31 7.61 87.66 0.67 22.97 16 13 O -0.62 -36.55 15.69 -3.06 -0.05 -36.60 16 14 C -0.10 -3.49 4.73 71.24 0.34 -3.15 16 15 S -0.19 -6.51 19.53 -56.49 -1.10 -7.61 16 16 C -0.09 -1.94 3.18 29.85 0.09 -1.85 16 17 H 0.15 2.03 8.14 -2.39 -0.02 2.02 16 18 C -0.14 -2.36 9.08 71.98 0.65 -1.71 16 19 C 0.55 13.44 6.97 87.66 0.61 14.06 16 20 O -0.52 -17.24 13.33 -3.00 -0.04 -17.28 16 21 N -0.61 -12.04 5.42 -309.52 -1.68 -13.72 16 22 C 0.24 5.60 8.18 134.11 1.10 6.69 16 23 C -0.26 -6.03 9.79 22.52 0.22 -5.81 16 24 C 0.00 -0.03 7.48 25.00 0.19 0.16 16 25 C -0.07 -0.56 10.45 71.23 0.74 0.18 16 26 O 0.09 1.87 11.19 71.19 0.80 2.67 16 27 N -0.41 -9.41 12.10 -56.31 -0.68 -10.09 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.06 1.58 6.60 -2.39 -0.02 1.57 16 31 H 0.09 4.13 5.34 -2.39 -0.01 4.11 16 32 H 0.07 2.43 6.66 -2.39 -0.02 2.42 16 33 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 34 H 0.13 3.45 6.54 -2.39 -0.02 3.44 16 35 H 0.12 3.54 6.42 -2.39 -0.02 3.53 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.31 6.92 -2.39 -0.02 1.30 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.43 5.34 8.82 -92.71 -0.82 4.52 16 40 H 0.18 4.66 6.22 -2.91 -0.02 4.64 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -80.81 373.66 5.12 -75.69 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.24 Total: 19.16 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.98 Total: 13.76 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -3.74 Total: -93.68 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: 0.71 Total: -51.21 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.10 Total: -7.61 kcal Total: -80.81 5.12 -75.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.688 kcal (2) G-P(sol) polarization free energy of solvation -80.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds