Wall clock time and date at job start Tue Mar 31 2020 23:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46493 * 109.47270 * 2 1 4 4 C 1.36938 * 120.00513 * 73.12500 * 3 2 1 5 5 H 1.07996 * 120.00195 * 207.82894 * 4 3 2 6 6 C 1.38812 * 119.99564 * 27.54902 * 4 3 2 7 7 N 1.31626 * 119.99907 * 27.77139 * 6 4 3 8 8 Si 1.86800 * 119.99914 * 207.77066 * 6 4 3 9 9 H 1.48503 * 109.47139 * 60.00122 * 8 6 4 10 10 H 1.48502 * 109.46896 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47008 * 300.00013 * 8 6 4 12 12 S 1.65607 * 119.99933 * 253.12897 * 3 2 1 13 13 O 1.42099 * 106.40172 * 23.53834 * 12 3 2 14 14 O 1.42098 * 106.40121 * 156.45813 * 12 3 2 15 15 C 1.76197 * 107.21696 * 269.99893 * 12 3 2 16 16 C 1.35453 * 126.06990 * 90.02388 * 15 12 3 17 17 N 1.35529 * 108.87503 * 179.97438 * 16 15 12 18 18 H 0.96997 * 125.68203 * 179.97438 * 17 16 15 19 19 C 1.37650 * 108.64317 * 359.97438 * 17 16 15 20 20 C 1.46680 * 126.23389 * 180.02562 * 19 17 16 21 21 O 1.21695 * 120.00010 * 180.02562 * 20 19 17 22 22 N 1.34773 * 119.99961 * 0.02692 * 20 19 17 23 23 C 1.47015 * 125.64969 * 359.68745 * 22 20 19 24 24 C 1.54309 * 107.27996 * 180.96984 * 23 22 20 25 25 C 1.55162 * 102.86141 * 22.52815 * 24 23 22 26 26 C 1.47425 * 125.64783 * 179.97438 * 22 20 19 27 27 C 1.37874 * 107.53229 * 359.75686 * 19 17 16 28 28 H 1.09006 * 109.46686 * 60.00585 * 1 2 3 29 29 H 1.09007 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47680 * 300.00588 * 1 2 3 31 31 H 1.08998 * 109.47158 * 239.99349 * 2 1 3 32 32 H 1.09006 * 109.46686 * 119.99414 * 2 1 3 33 33 H 0.97003 * 119.99732 * 180.02562 * 7 6 4 34 34 H 1.08001 * 125.56154 * 359.94097 * 16 15 12 35 35 H 1.09007 * 109.88596 * 300.52042 * 23 22 20 36 36 H 1.09001 * 109.88150 * 61.68110 * 23 22 20 37 37 H 1.09002 * 110.92909 * 264.11507 * 24 23 22 38 38 H 1.09007 * 110.59293 * 140.78671 * 24 23 22 39 39 H 1.08996 * 111.00305 * 206.22594 * 25 24 23 40 40 H 1.08995 * 111.03695 * 82.39175 * 25 24 23 41 41 H 1.08998 * 110.36858 * 274.66918 * 26 22 20 42 42 H 1.09004 * 110.36383 * 36.88437 * 26 22 20 43 43 H 1.08006 * 126.45608 * 180.23548 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.9221 2.1415 1.1348 5 1 1.8422 3.2159 1.0598 6 6 1.9214 1.5308 2.3814 7 7 2.5320 0.3769 2.5493 8 14 1.0538 2.3466 3.8206 9 1 -0.3870 2.5115 3.5010 10 1 1.1980 1.4982 5.0308 11 1 1.6603 3.6782 4.0737 12 16 2.6868 2.0230 -1.3725 13 8 2.1678 1.2714 -2.4610 14 8 2.5473 3.4331 -1.2651 15 6 4.4158 1.6883 -1.3162 16 6 5.0321 0.5901 -1.8150 17 7 6.3635 0.6908 -1.5824 18 1 7.0335 0.0376 -1.8378 19 6 6.6066 1.8745 -0.9232 20 6 7.9160 2.3699 -0.4853 21 8 8.0005 3.4379 0.0919 22 7 9.0254 1.6423 -0.7221 23 6 9.0664 0.3384 -1.4001 24 6 10.5393 -0.1213 -1.4209 25 6 11.1669 0.6772 -0.2478 26 6 10.3982 2.0192 -0.3390 27 6 5.3960 2.5126 -0.7550 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.5312 -0.0500 3.4203 34 1 4.5424 -0.2319 -2.3159 35 1 8.4586 -0.3829 -0.8536 36 1 8.6972 0.4395 -2.4207 37 1 11.0160 0.1419 -2.3651 38 1 10.6088 -1.1937 -1.2382 39 1 12.2350 0.8274 -0.4048 40 1 10.9799 0.1835 0.7058 41 1 10.8422 2.6600 -1.1008 42 1 10.3973 2.5242 0.6270 43 1 5.2349 3.4676 -0.2771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068345510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:21 Heat of formation + Delta-G solvation = -45.342786 kcal Electronic energy + Delta-G solvation = -28407.705364 eV Core-core repulsion = 24388.437665 eV Total energy + Delta-G solvation = -4019.267698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14176 -39.41827 -37.37551 -36.00239 -35.67156 -34.29281 -32.19265 -31.75413 -30.88198 -29.61248 -29.18792 -28.66774 -24.77312 -24.49030 -21.97379 -21.58820 -21.35973 -20.94124 -19.90653 -18.35336 -17.95572 -16.83591 -16.68729 -16.29020 -16.14793 -15.27986 -14.94880 -14.70811 -14.50526 -14.21020 -13.92752 -13.85810 -13.56345 -13.41565 -13.04152 -12.79845 -12.72658 -12.52599 -12.27048 -11.98159 -11.93984 -11.76041 -11.60258 -11.24210 -11.19369 -10.93849 -10.85005 -10.63862 -10.59462 -10.44397 -10.18959 -10.08604 -9.86503 -9.72676 -9.25905 -8.94574 -8.83081 -8.00064 -7.79526 -6.45409 -3.95517 1.69635 1.93056 2.73029 2.75863 3.19917 3.22660 3.29130 3.33677 3.55416 4.07355 4.10941 4.17527 4.45486 4.62991 4.74614 4.80561 4.84577 4.98690 5.07275 5.23465 5.26832 5.30515 5.42456 5.46069 5.54273 5.57029 5.74789 5.93615 6.07286 6.12336 6.16422 6.35384 6.44850 6.52995 6.72003 6.90070 6.99938 7.18056 7.31176 7.34436 7.36780 7.60020 7.66408 8.16404 8.40339 8.82125 9.27309 10.47335 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.003668 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.698802 B = 7632.290725 C = 8419.699249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.110 3.890 3 N -0.804 5.804 4 C -0.249 4.249 5 H 0.112 0.888 6 C 0.039 3.961 7 N -0.828 5.828 8 Si 0.918 3.082 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.267 1.267 12 S 2.569 3.431 13 O -1.010 7.010 14 O -0.986 6.986 15 C -0.724 4.724 16 C 0.123 3.877 17 N -0.545 5.545 18 H 0.411 0.589 19 C -0.085 4.085 20 C 0.612 3.388 21 O -0.526 6.526 22 N -0.627 5.627 23 C 0.087 3.913 24 C -0.129 4.129 25 C -0.134 4.134 26 C 0.107 3.893 27 C -0.002 4.002 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.272 0.728 34 H 0.180 0.820 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.438 -7.209 -4.662 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.628 5.628 4 C -0.396 4.396 5 H 0.129 0.871 6 C -0.174 4.174 7 N -0.467 5.467 8 Si 0.744 3.256 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.192 1.192 12 S 2.668 3.332 13 O -1.000 7.000 14 O -0.976 6.976 15 C -0.810 4.810 16 C -0.018 4.018 17 N -0.145 5.145 18 H 0.252 0.748 19 C -0.195 4.195 20 C 0.403 3.597 21 O -0.402 6.402 22 N -0.363 5.363 23 C -0.037 4.037 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.015 4.015 27 C -0.028 4.028 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.197 0.803 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.373 -6.347 -5.168 15.679 hybrid contribution 0.801 -0.518 0.777 1.231 sum 14.174 -6.865 -4.391 16.350 Atomic orbital electron populations 1.21961 0.97401 0.99805 1.01798 1.21413 0.93437 0.83560 1.03210 1.53873 1.59830 1.21211 1.27919 1.19735 1.43537 0.93108 0.83170 0.87067 1.25591 0.96298 0.96648 0.98856 1.69972 1.35068 1.17077 1.24563 0.86104 0.80478 0.79580 0.79446 1.19409 1.20869 1.19209 1.09575 0.73036 0.74607 0.76012 1.93324 1.78801 1.72601 1.55264 1.93350 1.85938 1.31137 1.87129 1.32576 1.29164 1.03364 1.15852 1.21809 0.82150 0.98991 0.98842 1.42768 1.08641 1.17821 1.45281 0.74783 1.20227 0.94695 0.91636 1.12956 1.16722 0.81199 0.83395 0.78370 1.90842 1.85560 1.21586 1.42215 1.48371 1.07076 1.21011 1.59863 1.22214 0.98873 0.85570 0.97027 1.22619 0.93463 1.00917 0.99674 1.22811 0.99950 0.95347 0.99092 1.22217 0.80946 0.96907 1.01457 1.20933 0.88332 0.98323 0.95257 0.93636 0.93579 0.92224 0.92841 0.87586 0.91780 0.80334 0.91208 0.91383 0.90156 0.89642 0.89545 0.90334 0.91367 0.90010 0.82704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 10.05 37.16 0.37 -2.58 16 2 C 0.11 2.40 5.78 -4.05 -0.02 2.37 16 3 N -0.80 -19.29 2.94 -59.91 -0.18 -19.47 16 4 C -0.25 -6.27 8.89 -15.06 -0.13 -6.41 16 5 H 0.11 2.86 7.34 -52.49 -0.39 2.48 16 6 C 0.04 0.93 4.98 -17.43 -0.09 0.85 16 7 N -0.83 -20.20 11.14 55.49 0.62 -19.58 16 8 Si 0.92 19.09 29.63 -169.99 -5.04 14.05 16 9 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 S 2.57 61.25 5.76 -107.50 -0.62 60.63 16 13 O -1.01 -24.52 16.59 -57.17 -0.95 -25.47 16 14 O -0.99 -26.30 16.70 -57.17 -0.95 -27.25 16 15 C -0.72 -15.50 6.18 -39.98 -0.25 -15.74 16 16 C 0.12 2.13 11.64 -16.91 -0.20 1.94 16 17 N -0.55 -8.25 5.61 -9.39 -0.05 -8.30 16 18 H 0.41 4.45 4.92 -40.82 -0.20 4.25 16 19 C -0.08 -1.58 6.89 -81.98 -0.56 -2.14 16 20 C 0.61 10.88 7.82 -12.85 -0.10 10.78 16 21 O -0.53 -11.10 17.14 5.19 0.09 -11.01 16 22 N -0.63 -8.15 3.33 -172.06 -0.57 -8.72 16 23 C 0.09 0.77 5.10 -3.08 -0.02 0.76 16 24 C -0.13 -0.77 6.95 -24.90 -0.17 -0.94 16 25 C -0.13 -0.90 7.08 -24.57 -0.17 -1.07 16 26 C 0.11 1.10 6.91 -2.52 -0.02 1.08 16 27 C 0.00 -0.04 10.44 -39.12 -0.41 -0.45 16 28 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 1.21 7.98 -51.93 -0.41 0.80 16 31 H 0.05 1.07 7.22 -51.93 -0.37 0.70 16 32 H 0.11 2.42 5.36 -51.93 -0.28 2.14 16 33 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 34 H 0.18 2.54 8.06 -52.49 -0.42 2.12 16 35 H 0.07 0.61 7.11 -51.92 -0.37 0.24 16 36 H 0.07 0.55 7.21 -51.93 -0.37 0.17 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 39 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.93 8.03 -51.93 -0.42 0.52 16 43 H 0.16 3.48 8.06 -52.48 -0.42 3.06 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -33.74 365.49 -9.67 -43.41 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.75 Total: 7.77 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.77 Total: -11.56 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.18 Total: -56.08 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -1.81 Total: -63.73 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.04 Total: 14.05 kcal Atomic # 16 Polarization: 61.25 SS G_CDS: -0.62 Total: 60.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.74 -9.67 -43.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068345510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.930 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds