Wall clock time and date at job start Tue Mar 31 2020 23:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46917 * 2 1 4 4 C 1.46511 * 120.00010 * 270.00040 * 3 2 1 5 5 C 1.50701 * 109.46959 * 269.99953 * 4 3 2 6 6 H 1.08000 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99569 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00366 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99475 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47374 * 60.00263 * 9 7 5 11 11 H 1.48502 * 109.47031 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47185 * 299.99775 * 9 7 5 13 13 C 1.34773 * 120.00478 * 90.00003 * 3 2 1 14 14 O 1.21583 * 120.00466 * 180.02562 * 13 3 2 15 15 N 1.34781 * 119.99925 * 0.02562 * 13 3 2 16 16 C 1.39939 * 120.00164 * 184.59721 * 15 13 3 17 17 C 1.38882 * 120.07063 * 324.90948 * 16 15 13 18 18 C 1.38090 * 119.93273 * 179.97438 * 17 16 15 19 19 C 1.38309 * 120.06674 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.92754 * 179.97438 * 19 18 17 21 21 C 1.38250 * 120.14128 * 0.27642 * 19 18 17 22 22 S 1.76205 * 119.96610 * 179.72721 * 21 19 18 23 23 N 1.65602 * 107.21529 * 294.99777 * 22 21 19 24 24 O 1.42104 * 106.39958 * 48.53820 * 22 21 19 25 25 O 1.42102 * 106.40029 * 181.45602 * 22 21 19 26 26 C 1.38139 * 120.06917 * 359.44747 * 21 19 18 27 27 H 1.09003 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47303 * 299.99556 * 1 2 3 29 29 H 1.08996 * 109.47116 * 60.00508 * 1 2 3 30 30 H 1.09000 * 109.47303 * 240.00444 * 2 1 3 31 31 H 1.09000 * 109.47533 * 119.99773 * 2 1 3 32 32 H 1.09000 * 109.46483 * 29.99863 * 4 3 2 33 33 H 1.08997 * 109.47050 * 149.99795 * 4 3 2 34 34 H 0.97006 * 120.00557 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99583 * 4.59519 * 15 13 3 36 36 H 1.08003 * 120.03422 * 359.96063 * 17 16 15 37 37 H 1.08000 * 119.96959 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47088 * 90.00228 * 20 19 18 39 39 H 1.09001 * 109.47230 * 329.99970 * 20 19 18 40 40 H 1.09000 * 109.46893 * 209.99785 * 20 19 18 41 41 H 0.97002 * 119.99743 * 150.00301 * 23 22 21 42 42 H 0.96997 * 119.99787 * 329.99947 * 23 22 21 43 43 H 1.08007 * 120.03561 * 180.27449 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9130 2.0957 -3.4176 10 1 6.1402 0.6390 -3.5949 11 1 6.1602 2.7948 -4.7042 12 1 6.8409 2.6191 -2.3830 13 6 2.2429 2.0166 1.1671 14 8 2.6477 3.1631 1.1671 15 7 2.0188 1.3812 2.3344 16 6 2.1593 2.0701 3.5444 17 6 3.1404 3.0435 3.6810 18 6 3.2762 3.7219 4.8761 19 6 2.4367 3.4324 5.9365 20 6 2.5881 4.1743 7.2395 21 6 1.4632 2.4596 5.8057 22 16 0.4009 2.0895 7.1619 23 7 1.3456 1.4572 8.3661 24 8 -0.0831 3.3356 7.6441 25 8 -0.4526 1.0394 6.7282 26 6 1.3186 1.7814 4.6109 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 3.6750 3.5163 -4.4441 35 1 1.7601 0.4463 2.3357 36 1 3.7967 3.2695 2.8535 37 1 4.0392 4.4787 4.9832 38 1 1.9624 5.0668 7.2243 39 1 3.6304 4.4636 7.3740 40 1 2.2809 3.5293 8.0627 41 1 1.0966 1.5840 9.2950 42 1 2.1480 0.9601 8.1425 43 1 0.5549 1.0246 4.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078607613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:16 Heat of formation + Delta-G solvation = -69.173317 kcal Electronic energy + Delta-G solvation = -27737.520451 eV Core-core repulsion = 23717.219383 eV Total energy + Delta-G solvation = -4020.301068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50204 -38.90404 -37.39961 -36.02005 -35.68985 -34.87513 -33.59160 -32.83048 -31.46112 -31.37001 -30.20775 -27.51544 -26.09861 -23.60781 -23.16257 -23.02009 -21.66063 -20.01609 -19.38286 -18.54398 -17.76543 -17.49272 -16.89086 -16.50364 -16.12141 -15.71233 -15.48410 -15.13670 -14.80466 -14.49906 -14.17769 -14.11282 -13.76102 -13.70291 -13.30399 -12.80696 -12.63241 -12.40918 -12.36687 -12.27706 -12.23246 -12.11854 -12.01874 -11.78643 -11.76622 -11.26337 -11.11016 -11.00124 -10.84660 -10.65866 -10.57876 -10.21135 -10.12775 -9.73411 -9.49405 -9.20643 -8.47947 -8.15041 -7.70286 -6.08752 -4.14013 0.19104 0.75120 1.17510 2.88344 3.03864 3.25863 3.28219 3.33104 3.35902 3.53118 3.84488 4.24909 4.38465 4.43788 4.59165 4.67843 4.94569 5.17523 5.18669 5.25029 5.32507 5.40839 5.44745 5.51511 5.60995 5.64762 5.65782 5.75256 5.90379 5.92392 6.13378 6.21080 6.33059 6.41549 6.48121 6.69519 6.71392 7.01979 7.28137 7.42376 7.57016 7.88173 8.17344 8.46711 8.85746 9.11342 9.51323 10.99115 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.002729 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.923168 B =10256.944441 C =11163.284303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.604 5.604 4 C 0.261 3.739 5 C -0.529 4.529 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.699 3.301 14 O -0.570 6.570 15 N -0.697 5.697 16 C 0.158 3.842 17 C -0.057 4.057 18 C -0.122 4.122 19 C -0.009 4.009 20 C -0.139 4.139 21 C -0.661 4.661 22 S 2.706 3.294 23 N -1.250 6.250 24 O -0.961 6.961 25 O -0.966 6.966 26 C -0.057 4.057 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.420 0.580 42 H 0.418 0.582 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -6.042 22.869 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.401 3.599 14 O -0.446 6.446 15 N -0.347 5.347 16 C 0.061 3.939 17 C -0.077 4.077 18 C -0.142 4.142 19 C -0.012 4.012 20 C -0.196 4.196 21 C -0.750 4.750 22 S 2.795 3.205 23 N -0.924 5.924 24 O -0.950 6.950 25 O -0.955 6.955 26 C -0.079 4.079 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.173 0.827 37 H 0.152 0.848 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.245 0.755 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.644 -4.903 22.407 23.225 hybrid contribution 1.754 -0.783 -0.680 2.038 sum -1.890 -5.686 21.727 22.539 Atomic orbital electron populations 1.22254 0.96488 1.01640 1.02664 1.21400 0.93742 0.84166 1.02502 1.47643 1.66652 1.13364 1.06172 1.19253 0.96277 0.93505 0.76807 1.21400 0.96933 1.32170 1.06328 0.92533 1.24922 0.97864 0.94877 0.96346 1.69913 1.35755 1.33235 1.14362 0.86552 0.84727 0.78233 0.77839 1.20277 1.21158 1.20217 1.15931 0.79194 0.84741 0.80068 1.90880 1.51532 1.16743 1.85456 1.42991 1.73919 1.14293 1.03481 1.17566 0.94821 0.95966 0.85549 1.21873 0.95015 0.93212 0.97633 1.21099 1.00183 1.00585 0.92308 1.19464 0.92625 0.92697 0.96384 1.21205 1.03932 1.01539 0.92903 1.30067 1.18199 1.10403 1.16341 1.01436 0.72620 0.73655 0.72826 1.53196 1.43615 1.73454 1.22111 1.93615 1.78281 1.43439 1.79696 1.93587 1.62756 1.57287 1.81901 1.20593 0.96694 0.99113 0.91542 0.91944 0.92989 0.91742 0.89360 0.92440 0.94691 0.93706 0.92585 0.75853 0.82730 0.84790 0.88901 0.90216 0.91365 0.75032 0.75494 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.35 2.46 -180.80 -0.44 -12.80 16 4 C 0.26 6.63 5.16 -5.19 -0.03 6.60 16 5 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.14 13.28 55.43 0.74 -25.40 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.70 14.34 8.12 -86.92 -0.71 13.64 16 14 O -0.57 -13.93 13.36 5.29 0.07 -13.86 16 15 N -0.70 -10.90 5.22 -14.23 -0.07 -10.98 16 16 C 0.16 2.38 6.30 -83.69 -0.53 1.85 16 17 C -0.06 -0.87 8.69 -39.40 -0.34 -1.21 16 18 C -0.12 -1.51 9.69 -39.61 -0.38 -1.90 16 19 C -0.01 -0.10 5.88 -104.59 -0.61 -0.72 16 20 C -0.14 -1.16 8.74 36.01 0.31 -0.84 16 21 C -0.66 -7.56 5.90 -39.61 -0.23 -7.80 16 22 S 2.71 26.83 5.48 -107.50 -0.59 26.25 16 23 N -1.25 -6.41 8.16 60.35 0.49 -5.91 16 24 O -0.96 -11.99 16.45 -57.17 -0.94 -12.93 16 25 O -0.97 -12.46 16.97 -57.17 -0.97 -13.43 16 26 C -0.06 -0.73 9.47 -39.39 -0.37 -1.10 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.70 6.30 -51.93 -0.33 0.37 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.40 5.02 6.52 -40.82 -0.27 4.75 16 36 H 0.16 2.76 6.23 -52.48 -0.33 2.43 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.07 0.46 5.30 -51.93 -0.28 0.18 16 41 H 0.42 1.30 8.96 -34.47 -0.31 0.99 16 42 H 0.42 1.30 8.96 -34.47 -0.31 0.99 16 43 H 0.14 1.63 7.33 -52.48 -0.38 1.24 16 LS Contribution 369.19 15.07 5.56 5.56 Total: -1.00 -37.21 369.19 -9.63 -46.84 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.50 Total: 5.26 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.96 Total: -5.04 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.71 Total: -55.09 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.84 Total: -40.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 26.83 SS G_CDS: -0.59 Total: 26.25 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.21 -9.63 -46.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078607613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.331 kcal (2) G-P(sol) polarization free energy of solvation -37.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds