Wall clock time and date at job start Tue Mar 31 2020 23:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46917 * 2 1 4 4 C 1.46511 * 120.00010 * 270.00040 * 3 2 1 5 5 C 1.50701 * 109.46959 * 269.99953 * 4 3 2 6 6 H 1.08000 * 120.00163 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99569 * 179.97438 * 5 4 3 8 8 N 1.31504 * 120.00366 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99475 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47374 * 60.00263 * 9 7 5 11 11 H 1.48502 * 109.47031 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47185 * 299.99775 * 9 7 5 13 13 C 1.34773 * 120.00478 * 90.00003 * 3 2 1 14 14 O 1.21583 * 120.00466 * 180.02562 * 13 3 2 15 15 N 1.34781 * 119.99925 * 0.02562 * 13 3 2 16 16 C 1.39939 * 120.00164 * 184.59721 * 15 13 3 17 17 C 1.38882 * 120.07063 * 324.90948 * 16 15 13 18 18 C 1.38090 * 119.93273 * 179.97438 * 17 16 15 19 19 C 1.38309 * 120.06674 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.92754 * 179.97438 * 19 18 17 21 21 C 1.38250 * 120.14128 * 0.27642 * 19 18 17 22 22 S 1.76205 * 119.96610 * 179.72721 * 21 19 18 23 23 N 1.65602 * 107.21529 * 294.99777 * 22 21 19 24 24 O 1.42104 * 106.39958 * 48.53820 * 22 21 19 25 25 O 1.42102 * 106.40029 * 181.45602 * 22 21 19 26 26 C 1.38139 * 120.06917 * 359.44747 * 21 19 18 27 27 H 1.09003 * 109.46872 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47303 * 299.99556 * 1 2 3 29 29 H 1.08996 * 109.47116 * 60.00508 * 1 2 3 30 30 H 1.09000 * 109.47303 * 240.00444 * 2 1 3 31 31 H 1.09000 * 109.47533 * 119.99773 * 2 1 3 32 32 H 1.09000 * 109.46483 * 29.99863 * 4 3 2 33 33 H 1.08997 * 109.47050 * 149.99795 * 4 3 2 34 34 H 0.97006 * 120.00557 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99583 * 4.59519 * 15 13 3 36 36 H 1.08003 * 120.03422 * 359.96063 * 17 16 15 37 37 H 1.08000 * 119.96959 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47088 * 90.00228 * 20 19 18 39 39 H 1.09001 * 109.47230 * 329.99970 * 20 19 18 40 40 H 1.09000 * 109.46893 * 209.99785 * 20 19 18 41 41 H 0.97002 * 119.99743 * 150.00301 * 23 22 21 42 42 H 0.96997 * 119.99787 * 329.99947 * 23 22 21 43 43 H 1.08007 * 120.03561 * 180.27449 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9130 2.0957 -3.4176 10 1 6.1402 0.6390 -3.5949 11 1 6.1602 2.7948 -4.7042 12 1 6.8409 2.6191 -2.3830 13 6 2.2429 2.0166 1.1671 14 8 2.6477 3.1631 1.1671 15 7 2.0188 1.3812 2.3344 16 6 2.1593 2.0701 3.5444 17 6 3.1404 3.0435 3.6810 18 6 3.2762 3.7219 4.8761 19 6 2.4367 3.4324 5.9365 20 6 2.5881 4.1743 7.2395 21 6 1.4632 2.4596 5.8057 22 16 0.4009 2.0895 7.1619 23 7 1.3456 1.4572 8.3661 24 8 -0.0831 3.3356 7.6441 25 8 -0.4526 1.0394 6.7282 26 6 1.3186 1.7814 4.6109 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5816 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 3.6750 3.5163 -4.4441 35 1 1.7601 0.4463 2.3357 36 1 3.7967 3.2695 2.8535 37 1 4.0392 4.4787 4.9832 38 1 1.9624 5.0668 7.2243 39 1 3.6304 4.4636 7.3740 40 1 2.2809 3.5293 8.0627 41 1 1.0966 1.5840 9.2950 42 1 2.1480 0.9601 8.1425 43 1 0.5549 1.0246 4.5079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078607613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:15 Heat of formation + Delta-G solvation = -98.270799 kcal Electronic energy + Delta-G solvation = -27738.782213 eV Core-core repulsion = 23717.219383 eV Total energy + Delta-G solvation = -4021.562829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.85529 -40.12896 -38.31345 -37.21195 -36.92703 -36.26209 -34.86833 -34.14299 -32.52951 -32.38428 -31.67503 -29.20153 -27.32095 -25.01435 -24.62791 -24.32531 -22.73242 -21.26057 -20.37976 -19.68674 -18.95552 -18.56193 -18.33819 -17.79941 -17.27715 -16.96781 -16.60371 -16.38219 -16.33061 -15.76283 -15.52928 -15.31247 -14.91501 -14.75159 -14.63022 -14.39771 -13.72516 -13.58237 -13.39466 -13.35861 -13.25201 -13.18615 -13.15214 -13.09801 -12.87878 -12.71894 -12.71070 -12.54293 -12.21259 -12.05754 -11.95572 -11.77144 -11.42699 -11.23587 -10.95548 -10.64737 -10.36983 -9.63434 -9.09182 -8.22453 -6.37683 -0.62860 -0.25679 0.13947 1.36473 1.40286 1.47481 1.62554 1.99246 2.18693 2.36977 2.47102 2.74114 2.92176 3.07475 3.51263 3.75206 3.77750 4.00519 4.03203 4.19524 4.30481 4.33655 4.49118 4.55353 4.67375 4.75731 4.80628 4.88450 4.92579 4.98609 5.07529 5.15560 5.21046 5.31211 5.33083 5.33488 5.41463 5.54143 5.75241 5.86863 6.00827 6.04672 6.39641 6.70794 6.97567 7.29034 7.55208 8.84049 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.002729 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.923168 B =10256.944441 C =11163.284303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.611 5.611 4 C 0.279 3.721 5 C -0.543 4.543 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.695 3.305 14 O -0.619 6.619 15 N -0.677 5.677 16 C 0.130 3.870 17 C -0.081 4.081 18 C -0.124 4.124 19 C 0.000 4.000 20 C -0.144 4.144 21 C -0.664 4.664 22 S 2.733 3.267 23 N -1.228 6.228 24 O -0.984 6.984 25 O -0.993 6.993 26 C -0.052 4.052 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.027 0.973 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.420 0.580 36 H 0.121 0.879 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.433 0.567 42 H 0.431 0.569 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -7.724 25.627 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.345 5.345 4 C 0.158 3.842 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.397 3.603 14 O -0.499 6.499 15 N -0.329 5.329 16 C 0.034 3.966 17 C -0.102 4.102 18 C -0.143 4.143 19 C -0.002 4.002 20 C -0.201 4.201 21 C -0.751 4.751 22 S 2.820 3.180 23 N -0.909 5.909 24 O -0.973 6.973 25 O -0.982 6.982 26 C -0.074 4.074 27 H 0.118 0.882 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.260 0.740 36 H 0.139 0.861 37 H 0.173 0.827 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.267 0.733 42 H 0.261 0.739 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.178 -6.653 25.214 26.270 hybrid contribution 1.571 -0.242 -1.370 2.098 sum -1.608 -6.895 23.843 24.872 Atomic orbital electron populations 1.22184 0.94558 1.03726 1.01687 1.21734 0.95307 0.81301 1.03978 1.47504 1.67051 1.15212 1.04698 1.18660 0.95385 0.91307 0.78885 1.21680 0.97841 1.32168 1.06526 0.92810 1.25835 1.02337 0.94444 0.96391 1.70040 1.37829 1.34094 1.14813 0.85473 0.79041 0.78994 0.77315 1.18478 1.20438 1.20347 1.16093 0.78846 0.84297 0.81111 1.90844 1.53593 1.19077 1.86396 1.42593 1.73165 1.14815 1.02292 1.17745 0.96133 0.96982 0.85717 1.21740 0.95584 0.94813 0.98049 1.21332 1.00962 1.00475 0.91507 1.19828 0.91298 0.91937 0.97114 1.21368 1.05751 1.01378 0.91590 1.30412 1.18108 1.10061 1.16538 1.00531 0.72152 0.72818 0.72494 1.52713 1.43581 1.72864 1.21767 1.93588 1.79034 1.44806 1.79910 1.93561 1.64030 1.58024 1.82624 1.20740 0.96240 0.99302 0.91109 0.88216 0.92775 0.93915 0.89945 0.88870 0.95482 0.98411 0.92375 0.73964 0.86115 0.82726 0.89116 0.87679 0.89511 0.73301 0.73850 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.33 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.61 -25.91 2.46 -844.18 -2.07 -27.98 16 4 C 0.28 15.01 5.16 85.63 0.44 15.45 16 5 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.52 5.46 84.66 0.46 0.98 16 8 N -0.93 -55.98 13.28 21.45 0.28 -55.70 16 9 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.69 29.78 8.12 179.05 1.45 31.23 16 14 O -0.62 -32.39 13.36 -3.98 -0.05 -32.44 16 15 N -0.68 -21.40 5.22 -317.19 -1.65 -23.06 16 16 C 0.13 3.95 6.30 38.15 0.24 4.19 16 17 C -0.08 -2.59 8.69 22.39 0.19 -2.39 16 18 C -0.12 -2.98 9.69 22.25 0.22 -2.77 16 19 C 0.00 0.01 5.88 -19.84 -0.12 -0.11 16 20 C -0.14 -1.95 8.74 71.24 0.62 -1.32 16 21 C -0.66 -13.92 5.90 22.25 0.13 -13.79 16 22 S 2.73 47.31 5.48 -56.49 -0.31 47.00 16 23 N -1.23 -8.25 8.16 37.02 0.30 -7.94 16 24 O -0.98 -22.22 16.45 -128.00 -2.11 -24.32 16 25 O -0.99 -23.40 16.97 -128.00 -2.17 -25.58 16 26 C -0.05 -1.26 9.47 22.39 0.21 -1.05 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 2.57 8.07 -2.39 -0.02 2.55 16 31 H 0.09 2.09 6.30 -2.39 -0.02 2.08 16 32 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 33 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 34 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 35 H 0.42 9.97 6.52 -92.71 -0.60 9.36 16 36 H 0.12 4.69 6.23 -2.91 -0.02 4.67 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 40 H 0.09 0.83 5.30 -2.39 -0.01 0.82 16 41 H 0.43 1.03 8.96 -96.74 -0.87 0.17 16 42 H 0.43 1.03 8.96 -96.75 -0.87 0.16 16 43 H 0.16 3.31 7.33 -2.91 -0.02 3.29 16 Total: -1.00 -85.14 369.19 -1.66 -86.80 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -1.26 Total: 16.91 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 5.35 Total: -0.27 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -3.14 Total: -114.68 kcal Atomic # 8 Polarization: -78.01 SS G_CDS: -4.33 Total: -82.34 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 47.31 SS G_CDS: -0.31 Total: 47.00 kcal Total: -85.14 -1.66 -86.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078607613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.467 kcal (2) G-P(sol) polarization free energy of solvation -85.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds