Wall clock time and date at job start Tue Mar 31 2020 23:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46912 * 2 1 4 4 C 1.46493 * 120.00276 * 269.99922 * 3 2 1 5 5 C 1.50697 * 109.47372 * 269.99947 * 4 3 2 6 6 H 1.08000 * 120.00129 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00458 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00175 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99822 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47596 * 89.99796 * 9 7 5 11 11 H 1.48498 * 109.47260 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.47267 * 329.99473 * 9 7 5 13 13 C 1.34780 * 119.99806 * 89.99991 * 3 2 1 14 14 O 1.21587 * 119.99758 * 180.02562 * 13 3 2 15 15 N 1.34772 * 120.00188 * 359.97438 * 13 3 2 16 16 C 1.39948 * 119.99986 * 184.59377 * 15 13 3 17 17 C 1.38862 * 120.07247 * 324.91212 * 16 15 13 18 18 C 1.38116 * 119.93058 * 180.02562 * 17 16 15 19 19 C 1.38282 * 120.06983 * 0.02984 * 18 17 16 20 20 S 1.76197 * 119.92875 * 179.97438 * 19 18 17 21 21 O 1.42096 * 106.40429 * 336.45601 * 20 19 18 22 22 O 1.42104 * 106.39983 * 203.53632 * 20 19 18 23 23 N 1.65600 * 107.22186 * 89.99813 * 20 19 18 24 24 C 1.46506 * 119.99884 * 64.99247 * 23 20 19 25 25 C 1.38277 * 120.14035 * 0.22435 * 19 18 17 26 26 C 1.38117 * 120.06825 * 359.49581 * 25 19 18 27 27 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47742 * 299.99991 * 1 2 3 29 29 H 1.09001 * 109.47166 * 60.00298 * 1 2 3 30 30 H 1.08995 * 109.47372 * 240.00391 * 2 1 3 31 31 H 1.09001 * 109.47166 * 119.99702 * 2 1 3 32 32 H 1.09002 * 109.47433 * 29.99879 * 4 3 2 33 33 H 1.09000 * 109.47728 * 149.99890 * 4 3 2 34 34 H 0.96998 * 120.00299 * 179.97438 * 8 7 5 35 35 H 0.97007 * 120.00091 * 4.60037 * 15 13 3 36 36 H 1.07997 * 120.03240 * 0.02562 * 17 16 15 37 37 H 1.08004 * 119.96591 * 180.02562 * 18 17 16 38 38 H 0.96997 * 120.00285 * 245.00225 * 23 20 19 39 39 H 1.09001 * 109.46807 * 180.02562 * 24 23 20 40 40 H 1.08996 * 109.47520 * 300.00872 * 24 23 20 41 41 H 1.09002 * 109.46482 * 60.00729 * 24 23 20 42 42 H 1.07997 * 119.96632 * 179.72538 * 25 19 18 43 43 H 1.08002 * 120.03424 * 180.25040 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0957 7 6 4.1490 2.3899 -2.8779 8 7 5.3913 2.1837 -3.2572 9 14 3.0128 3.4353 -3.9291 10 1 3.1161 4.8556 -3.5080 11 1 3.4057 3.3122 -5.3558 12 1 1.6130 2.9693 -3.7593 13 6 2.2428 2.0166 1.1673 14 8 2.6476 3.1631 1.1672 15 7 2.0178 1.3814 2.3344 16 6 2.1583 2.0704 3.5444 17 6 3.1400 3.0429 3.6814 18 6 3.2765 3.7207 4.8771 19 6 2.4373 3.4312 5.9373 20 16 2.6151 4.2976 7.4612 21 8 3.9540 4.7722 7.4991 22 8 2.0584 3.4609 8.4658 23 7 1.6461 5.6380 7.3791 24 6 0.1915 5.4861 7.2937 25 6 1.4622 2.4596 5.8058 26 6 1.3168 1.7824 4.6109 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 5.7172 2.5736 -4.0834 35 1 1.7584 0.4467 2.3358 36 1 3.7960 3.2691 2.8539 37 1 4.0395 4.4775 4.9841 38 1 2.0416 6.5237 7.3875 39 1 -0.2745 6.4704 7.2478 40 1 -0.0629 4.9218 6.3965 41 1 -0.1704 4.9531 8.1729 42 1 0.8112 2.2327 6.6371 43 1 0.5524 1.0265 4.5075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078608439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:19 Heat of formation + Delta-G solvation = -59.802646 kcal Electronic energy + Delta-G solvation = -27489.695371 eV Core-core repulsion = 23469.800646 eV Total energy + Delta-G solvation = -4019.894725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59141 -38.74773 -37.37293 -35.99532 -35.76404 -35.25167 -34.75019 -32.73094 -31.11904 -30.51402 -30.01694 -27.56384 -26.28532 -23.77627 -23.18237 -23.06045 -21.98732 -19.77638 -19.56102 -18.34723 -18.03037 -17.62018 -17.14046 -16.95718 -16.45202 -15.55451 -15.25565 -15.00921 -14.55682 -14.50479 -14.12540 -14.08014 -13.94635 -13.64458 -13.54188 -13.19977 -13.12620 -12.96147 -12.65084 -12.40852 -12.23673 -12.15854 -12.05844 -11.86894 -11.59222 -11.51954 -11.15543 -11.08647 -10.91031 -10.59438 -10.51821 -10.23764 -9.92595 -9.68354 -9.49502 -9.07666 -8.66176 -8.47351 -7.87214 -6.15681 -4.15437 0.25450 0.75913 1.27349 2.82500 2.83132 3.23635 3.29328 3.30182 3.32048 3.58954 3.76435 4.10210 4.21757 4.32661 4.69516 4.72208 4.77793 5.03209 5.12418 5.16103 5.18820 5.28643 5.34451 5.40397 5.41834 5.47408 5.51626 5.73498 5.80159 5.84635 5.97707 6.10025 6.18864 6.25048 6.45698 6.46790 6.62857 6.75565 6.94819 7.07604 7.28577 7.51974 8.23022 8.38528 8.85537 8.92308 9.43647 10.97592 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002639 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.965383 B =10605.977112 C =11290.945562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.231 3.769 5 C -0.533 4.533 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.700 3.300 14 O -0.563 6.563 15 N -0.695 5.695 16 C 0.239 3.761 17 C -0.143 4.143 18 C 0.002 3.998 19 C -0.707 4.707 20 S 2.702 3.298 21 O -0.961 6.961 22 O -0.962 6.962 23 N -1.122 6.122 24 C 0.084 3.916 25 C -0.003 4.003 26 C -0.178 4.178 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.156 0.844 37 H 0.141 0.859 38 H 0.418 0.582 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.140 0.860 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 0.296 18.610 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.333 5.333 4 C 0.110 3.890 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.402 3.598 14 O -0.439 6.439 15 N -0.344 5.344 16 C 0.140 3.860 17 C -0.164 4.164 18 C -0.019 4.019 19 C -0.796 4.796 20 S 2.792 3.208 21 O -0.952 6.952 22 O -0.952 6.952 23 N -0.882 5.882 24 C -0.063 4.063 25 C -0.023 4.023 26 C -0.200 4.200 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.174 0.826 37 H 0.159 0.841 38 H 0.252 0.748 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.158 0.842 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.908 0.734 18.977 22.962 hybrid contribution -0.714 0.181 -1.585 1.747 sum -13.622 0.915 17.392 22.111 Atomic orbital electron populations 1.22257 0.96437 1.01812 1.02508 1.21441 0.93615 0.83784 1.03065 1.47293 1.66923 1.13476 1.05570 1.19635 0.97440 0.93217 0.78660 1.21319 0.95303 1.33253 1.07260 0.90744 1.24844 0.95003 0.95746 0.97320 1.69888 1.15107 1.44800 1.23538 0.86853 0.81345 0.81639 0.79833 1.19846 1.21015 1.19096 1.15883 0.79055 0.84797 0.80044 1.90906 1.50834 1.16729 1.85421 1.43161 1.72898 1.14541 1.03763 1.17912 0.91639 0.91854 0.84569 1.21632 0.98434 0.97727 0.98653 1.20805 0.94646 0.95869 0.90539 1.30577 1.10045 1.16664 1.22323 1.01576 0.72608 0.72730 0.73901 1.93593 1.34106 1.80391 1.87071 1.93566 1.79358 1.67133 1.55186 1.55335 1.17259 1.23465 1.92112 1.21488 0.79022 1.03826 1.01951 1.20593 0.93834 0.91271 0.96650 1.20960 1.00775 1.04604 0.93691 0.91718 0.93002 0.91888 0.89012 0.92089 0.94911 0.94373 0.92457 0.75563 0.82639 0.84133 0.74785 0.89999 0.92006 0.91390 0.84227 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.11 1.47 5.93 -4.04 -0.02 1.44 16 3 N -0.60 -11.48 2.46 -180.81 -0.44 -11.92 16 4 C 0.23 5.36 4.23 -5.20 -0.02 5.34 16 5 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.85 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 9 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 13 C 0.70 13.60 8.12 -86.92 -0.71 12.89 16 14 O -0.56 -13.14 13.36 5.29 0.07 -13.07 16 15 N -0.70 -10.14 5.22 -14.22 -0.07 -10.22 16 16 C 0.24 3.40 6.30 -83.69 -0.53 2.88 16 17 C -0.14 -2.25 8.70 -39.40 -0.34 -2.59 16 18 C 0.00 0.02 9.51 -39.61 -0.38 -0.35 16 19 C -0.71 -8.25 5.95 -39.55 -0.24 -8.48 16 20 S 2.70 28.94 5.74 -107.50 -0.62 28.33 16 21 O -0.96 -13.06 17.27 -57.17 -0.99 -14.05 16 22 O -0.96 -12.26 16.99 -57.17 -0.97 -13.23 16 23 N -1.12 -8.33 6.19 -16.63 -0.10 -8.44 16 24 C 0.08 0.48 11.14 59.85 0.67 1.15 16 25 C 0.00 -0.04 9.51 -39.61 -0.38 -0.41 16 26 C -0.18 -1.98 9.97 -39.39 -0.39 -2.37 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 31 H 0.06 0.69 6.30 -51.93 -0.33 0.36 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.41 4.56 6.52 -40.82 -0.27 4.30 16 36 H 0.16 2.87 6.22 -52.49 -0.33 2.54 16 37 H 0.14 1.70 7.61 -52.48 -0.40 1.30 16 38 H 0.42 2.35 8.96 -34.47 -0.31 2.04 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.14 1.14 7.60 -52.49 -0.40 0.74 16 43 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -37.48 372.91 -9.52 -47.00 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.72 Total: 5.16 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.40 Total: -5.16 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.15 Total: -56.86 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.89 Total: -40.35 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 28.94 SS G_CDS: -0.62 Total: 28.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.48 -9.52 -47.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078608439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.804 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds