Wall clock time and date at job start Tue Mar 31 2020 23:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.46912 * 2 1 4 4 C 1.46493 * 120.00276 * 269.99922 * 3 2 1 5 5 C 1.50697 * 109.47372 * 269.99947 * 4 3 2 6 6 H 1.08000 * 120.00129 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00458 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00175 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99822 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47596 * 89.99796 * 9 7 5 11 11 H 1.48498 * 109.47260 * 209.99936 * 9 7 5 12 12 H 1.48500 * 109.47267 * 329.99473 * 9 7 5 13 13 C 1.34780 * 119.99806 * 89.99991 * 3 2 1 14 14 O 1.21587 * 119.99758 * 180.02562 * 13 3 2 15 15 N 1.34772 * 120.00188 * 359.97438 * 13 3 2 16 16 C 1.39948 * 119.99986 * 184.59377 * 15 13 3 17 17 C 1.38862 * 120.07247 * 324.91212 * 16 15 13 18 18 C 1.38116 * 119.93058 * 180.02562 * 17 16 15 19 19 C 1.38282 * 120.06983 * 0.02984 * 18 17 16 20 20 S 1.76197 * 119.92875 * 179.97438 * 19 18 17 21 21 O 1.42096 * 106.40429 * 336.45601 * 20 19 18 22 22 O 1.42104 * 106.39983 * 203.53632 * 20 19 18 23 23 N 1.65600 * 107.22186 * 89.99813 * 20 19 18 24 24 C 1.46506 * 119.99884 * 64.99247 * 23 20 19 25 25 C 1.38277 * 120.14035 * 0.22435 * 19 18 17 26 26 C 1.38117 * 120.06825 * 359.49581 * 25 19 18 27 27 H 1.09000 * 109.46833 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47742 * 299.99991 * 1 2 3 29 29 H 1.09001 * 109.47166 * 60.00298 * 1 2 3 30 30 H 1.08995 * 109.47372 * 240.00391 * 2 1 3 31 31 H 1.09001 * 109.47166 * 119.99702 * 2 1 3 32 32 H 1.09002 * 109.47433 * 29.99879 * 4 3 2 33 33 H 1.09000 * 109.47728 * 149.99890 * 4 3 2 34 34 H 0.96998 * 120.00299 * 179.97438 * 8 7 5 35 35 H 0.97007 * 120.00091 * 4.60037 * 15 13 3 36 36 H 1.07997 * 120.03240 * 0.02562 * 17 16 15 37 37 H 1.08004 * 119.96591 * 180.02562 * 18 17 16 38 38 H 0.96997 * 120.00285 * 245.00225 * 23 20 19 39 39 H 1.09001 * 109.46807 * 180.02562 * 24 23 20 40 40 H 1.08996 * 109.47520 * 300.00872 * 24 23 20 41 41 H 1.09002 * 109.46482 * 60.00729 * 24 23 20 42 42 H 1.07997 * 119.96632 * 179.72538 * 25 19 18 43 43 H 1.08002 * 120.03424 * 180.25040 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8352 -1.7037 6 1 4.3428 1.2311 -1.0957 7 6 4.1490 2.3899 -2.8779 8 7 5.3913 2.1837 -3.2572 9 14 3.0128 3.4353 -3.9291 10 1 3.1161 4.8556 -3.5080 11 1 3.4057 3.3122 -5.3558 12 1 1.6130 2.9693 -3.7593 13 6 2.2428 2.0166 1.1673 14 8 2.6476 3.1631 1.1672 15 7 2.0178 1.3814 2.3344 16 6 2.1583 2.0704 3.5444 17 6 3.1400 3.0429 3.6814 18 6 3.2765 3.7207 4.8771 19 6 2.4373 3.4312 5.9373 20 16 2.6151 4.2976 7.4612 21 8 3.9540 4.7722 7.4991 22 8 2.0584 3.4609 8.4658 23 7 1.6461 5.6380 7.3791 24 6 0.1915 5.4861 7.2937 25 6 1.4622 2.4596 5.8058 26 6 1.3168 1.7824 4.6109 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1384 34 1 5.7172 2.5736 -4.0834 35 1 1.7584 0.4467 2.3358 36 1 3.7960 3.2691 2.8539 37 1 4.0395 4.4775 4.9841 38 1 2.0416 6.5237 7.3875 39 1 -0.2745 6.4704 7.2478 40 1 -0.0629 4.9218 6.3965 41 1 -0.1704 4.9531 8.1729 42 1 0.8112 2.2327 6.6371 43 1 0.5524 1.0265 4.5075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078608439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:18 Heat of formation + Delta-G solvation = -89.553682 kcal Electronic energy + Delta-G solvation = -27490.985472 eV Core-core repulsion = 23469.800646 eV Total energy + Delta-G solvation = -4021.184827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90164 -39.92134 -38.33434 -37.22145 -36.95393 -36.11181 -35.82565 -34.76814 -32.12732 -31.90527 -31.19290 -29.24603 -26.79178 -25.21414 -24.45605 -24.09616 -23.40366 -20.94905 -20.58826 -19.52744 -19.15802 -18.96016 -18.58790 -18.27622 -17.27618 -16.86979 -16.70414 -16.23306 -15.85327 -15.52086 -15.43165 -15.36078 -14.83641 -14.69213 -14.52909 -14.50942 -14.23666 -14.03179 -13.83492 -13.74821 -13.47742 -13.22672 -13.20284 -13.13802 -12.65410 -12.57599 -12.48552 -12.45649 -12.15035 -12.05788 -11.94284 -11.76069 -11.69376 -11.07200 -10.84284 -10.50283 -10.08528 -9.77167 -9.31246 -8.35165 -6.40786 -0.61583 -0.25932 0.27954 1.31824 1.36848 1.44136 1.53554 1.91535 2.12510 2.29931 2.51562 2.79409 2.84576 3.00156 3.33170 3.76965 3.86352 3.99387 4.23293 4.27543 4.29033 4.33235 4.45102 4.49057 4.70363 4.72408 4.77860 4.83126 4.90589 4.93976 4.95753 4.96129 5.03934 5.07727 5.19282 5.34110 5.36170 5.43762 5.53158 5.85357 5.88275 6.11295 6.23251 6.60884 6.87484 7.20681 7.46202 8.81900 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002639 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.965383 B =10605.977112 C =11290.945562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.607 5.607 4 C 0.242 3.758 5 C -0.537 4.537 6 H 0.027 0.973 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.234 1.234 13 C 0.695 3.305 14 O -0.613 6.613 15 N -0.676 5.676 16 C 0.216 3.784 17 C -0.172 4.172 18 C -0.008 4.008 19 C -0.703 4.703 20 S 2.725 3.275 21 O -0.994 6.994 22 O -0.978 6.978 23 N -1.113 6.113 24 C 0.071 3.929 25 C 0.001 3.999 26 C -0.159 4.159 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.268 0.732 35 H 0.424 0.576 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.428 0.572 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.175 0.825 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.688 -0.348 20.079 26.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.340 5.340 4 C 0.120 3.880 5 C -0.576 4.576 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.157 1.157 13 C 0.397 3.603 14 O -0.492 6.492 15 N -0.326 5.326 16 C 0.118 3.882 17 C -0.193 4.193 18 C -0.028 4.028 19 C -0.791 4.791 20 S 2.814 3.186 21 O -0.984 6.984 22 O -0.967 6.967 23 N -0.876 5.876 24 C -0.075 4.075 25 C -0.019 4.019 26 C -0.181 4.181 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.265 0.735 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.192 0.808 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.903 0.018 20.490 26.562 hybrid contribution 0.564 0.364 -1.871 1.988 sum -16.339 0.382 18.618 24.774 Atomic orbital electron populations 1.22171 0.93501 1.03904 1.02296 1.21789 0.95937 0.80921 1.03955 1.47268 1.67142 1.15313 1.04290 1.19259 0.94795 0.92897 0.81082 1.21572 0.97149 1.32207 1.06682 0.95490 1.25852 0.96704 0.97167 0.98979 1.70051 1.17509 1.46573 1.24479 0.85713 0.80560 0.78945 0.77701 1.20293 1.20143 1.15730 1.16101 0.78621 0.84421 0.81185 1.90875 1.52862 1.19150 1.86362 1.42775 1.72233 1.15124 1.02466 1.18134 0.92552 0.92276 0.85221 1.21429 0.99495 0.99898 0.98499 1.20809 0.95455 0.96046 0.90464 1.30798 1.09564 1.16924 1.21821 1.00809 0.71921 0.72755 0.73131 1.93549 1.36574 1.80937 1.87353 1.93544 1.79529 1.68137 1.55531 1.55067 1.17945 1.22863 1.91684 1.21789 0.77573 1.05607 1.02523 1.21082 0.93370 0.89976 0.97427 1.21319 1.00085 1.04487 0.92181 0.88378 0.92154 0.93159 0.90150 0.89334 0.92657 0.96126 0.92267 0.73480 0.86680 0.84024 0.73611 0.87647 0.91532 0.90735 0.80802 0.80934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.24 71.98 0.74 -2.32 16 2 C 0.10 2.54 5.93 86.38 0.51 3.05 16 3 N -0.61 -23.37 2.46 -844.22 -2.07 -25.44 16 4 C 0.24 11.37 4.23 85.63 0.36 11.73 16 5 C -0.54 -31.07 9.94 25.60 0.25 -30.81 16 6 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 7 C 0.01 0.64 5.47 84.66 0.46 1.11 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.24 16 9 Si 0.95 43.58 27.47 68.60 1.88 45.46 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 13 C 0.69 27.58 8.12 179.05 1.45 29.03 16 14 O -0.61 -30.23 13.36 -3.99 -0.05 -30.29 16 15 N -0.68 -19.23 5.22 -317.18 -1.65 -20.89 16 16 C 0.22 6.00 6.30 38.15 0.24 6.24 16 17 C -0.17 -5.68 8.70 22.39 0.19 -5.49 16 18 C -0.01 -0.21 9.51 22.25 0.21 0.00 16 19 C -0.70 -15.42 5.95 22.29 0.13 -15.29 16 20 S 2.73 54.36 5.74 -56.49 -0.32 54.03 16 21 O -0.99 -26.72 17.27 -128.00 -2.21 -28.93 16 22 O -0.98 -22.63 16.99 -128.00 -2.18 -24.80 16 23 N -1.11 -14.20 6.19 -206.53 -1.28 -15.48 16 24 C 0.07 0.60 11.14 127.77 1.42 2.02 16 25 C 0.00 0.02 9.51 22.25 0.21 0.23 16 26 C -0.16 -3.01 9.97 22.39 0.22 -2.79 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 31 H 0.09 1.81 6.30 -2.39 -0.02 1.79 16 32 H 0.06 2.35 7.13 -2.39 -0.02 2.33 16 33 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 34 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 35 H 0.42 8.56 6.52 -92.70 -0.60 7.95 16 36 H 0.12 4.73 6.22 -2.91 -0.02 4.72 16 37 H 0.14 3.68 7.61 -2.91 -0.02 3.66 16 38 H 0.43 4.03 8.96 -96.75 -0.87 3.16 16 39 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 42 H 0.17 1.99 7.60 -2.91 -0.02 1.96 16 43 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -87.54 372.91 -1.64 -89.18 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.47 Total: 19.68 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.42 Total: -3.29 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -4.71 Total: -121.04 kcal Atomic # 8 Polarization: -79.58 SS G_CDS: -4.44 Total: -84.02 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.46 kcal Atomic # 16 Polarization: 54.36 SS G_CDS: -0.32 Total: 54.03 kcal Total: -87.54 -1.64 -89.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078608439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.377 kcal (2) G-P(sol) polarization free energy of solvation -87.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds